Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Reverse (-)

32923654 .. 32931965

Gene Structure 8312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACTTTCCAGTTTGAGTTTGGGGCTTGTGGTACTATTTCTTTGCAAGGTCCCGAGTTTCAACCAATCAATGAGTGCGTTTATGAGAAATACAAACCAGCTGAAAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTACAGACCAATATAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

221

Amino Acids

24.44

Weight (kDa)

6.89

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	5 cut(s)	114, 117, 137, 162, 213
AclWI	GGATC	3 cut(s)	171, 184, 411
AcoI	YGGCCR	2 cut(s)	226, 360
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	34, 233, 486
AfiI	CCNNNNNNNGG	2 cut(s)	172, 553
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	62
AluBI	AGCT	4 cut(s)	101, 110, 170, 534
AluI	AGCT	4 cut(s)	101, 110, 170, 534
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	3 cut(s)	171, 184, 411
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	226, 360
ApeKI	GCWGC	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	2 cut(s)	228, 362
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	2 cut(s)	394, 461
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	3 cut(s)	216, 302, 452
BfmI	CTRYAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	117, 535
BlsI	GCNGC	2 cut(s)	118, 536
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	4 cut(s)	52, 178, 208, 243
BmtI	GCTAGC	1 cut(s)	219
BsaAI	YACGTR	2 cut(s)	235, 553
BsaJI	CCNNGG	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 553
Bse1I	ACTGG	3 cut(s)	10, 229, 662
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	172, 553
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	3 cut(s)	10, 229, 662
BseXI	GCAGC	1 cut(s)	521
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	228, 362
BshNI	GGYRCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	172, 553
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	228, 362
BsoBI	CYCGRG	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	176, 198, 403
BspACI	CCGC	5 cut(s)	114, 117, 137, 162, 213
BspANI	GGCC	2 cut(s)	228, 362
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	4 cut(s)	52, 178, 208, 243
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	171, 184, 411
BspT107I	GGYRCC	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	10, 229, 662
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	3 cut(s)	176, 198, 403
Bst6I	CTCTTC	1 cut(s)	409
BstAUI	TGTACA	1 cut(s)	484
BstBAI	YACGTR	2 cut(s)	235, 553
BstC8I	GCNNGC	4 cut(s)	121, 162, 217, 527
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	3 cut(s)	179, 201, 406
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	3 cut(s)	176, 198, 403
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 116, 129, 225, 470, 531
BstNSI	RCATGY	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	228, 362
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	4 cut(s)	121, 162, 217, 527
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	33, 232, 485
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviAII	CATG	2 cut(s)	392, 577
CviQI	GTAC	3 cut(s)	33, 232, 485
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	178, 200, 405
DpnII	GATC	3 cut(s)	176, 198, 403
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	226, 360
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
EciI	GGCGGA	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	50
FaeI	CATG	2 cut(s)	395, 580
FaiI	YATR	8 cut(s)	84, 275, 329, 376, 393, 449, 497, 578
FalI	AAGNNNNNCTT	4 cut(s)	406, 438, 552, 584
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	391, 576
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	117, 535
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	117, 535
FspBI	CTAG	3 cut(s)	216, 302, 452
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	2 cut(s)	117, 535
GsaI	CCCAGC	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	228, 362
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	395, 580
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	168
HpaII	CCGG	1 cut(s)	204
Hpy166II	GTNNAC	2 cut(s)	355, 502
Hpy188I	TCNGA	3 cut(s)	181, 194, 241
Hpy188III	TCNNGA	3 cut(s)	53, 266, 432
Hpy8I	GTNNAC	2 cut(s)	355, 502
HpyAV	CCTTC	1 cut(s)	503
HpyCH4IV	ACGT	2 cut(s)	234, 552
HpyCH4V	TGCA	3 cut(s)	46, 464, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 116, 129, 225, 470, 531
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	234, 552
Hsp92II	CATG	2 cut(s)	395, 580
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	176, 198, 403
Lsp1109I	GCAGC	1 cut(s)	521
MaeI	CTAG	3 cut(s)	216, 302, 452
MaeII	ACGT	2 cut(s)	234, 552
MaeIII	GTNAC	3 cut(s)	247, 309, 321
MalI	GATC	3 cut(s)	178, 200, 405
MboI	GATC	3 cut(s)	176, 198, 403
MboII	GAAGA	2 cut(s)	248, 426
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	176
MlsI	TGGCCA	2 cut(s)	228, 362
MluCI	AATT	3 cut(s)	281, 407, 426
MluNI	TGGCCA	2 cut(s)	228, 362
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	312, 582, 607
Mox20I	TGGCCA	2 cut(s)	228, 362
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	2 cut(s)	228, 362
MseI	TTAA	2 cut(s)	425, 543
Msp20I	TGGCCA	2 cut(s)	228, 362
MspA1I	CMGCKG	2 cut(s)	101, 534
MspI	CCGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	407
MwoI	GCNNNNNNNGC	6 cut(s)	107, 116, 129, 225, 470, 531
NdeII	GATC	3 cut(s)	176, 198, 403
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	395, 580
NlaIV	GGNNCC	4 cut(s)	52, 178, 208, 243
NmeAIII	GCCGAG	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	247, 321
NspI	RCATGY	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	564
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	118, 536
Ppu21I	YACGTR	2 cut(s)	235, 553
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	52, 178, 208, 243
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	176
PvuII	CAGCTG	2 cut(s)	101, 534
RsaI	GTAC	3 cut(s)	34, 233, 486
RsaNI	GTAC	3 cut(s)	33, 232, 485
SaqAI	TTAA	2 cut(s)	425, 543
SatI	GCNGC	2 cut(s)	117, 535
Sau3AI	GATC	3 cut(s)	176, 198, 403
Sau96I	GGNCC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	281, 407, 426
SsiI	CCGC	5 cut(s)	114, 117, 137, 162, 213
SspMI	CTAG	3 cut(s)	216, 302, 452
TaiI	ACGT	2 cut(s)	237, 555
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	281, 407, 426
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	425, 543
Tru9I	TTAA	2 cut(s)	425, 543
TseFI	GTSAC	2 cut(s)	247, 321
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	2 cut(s)	247, 321
TspDTI	ATGAA	3 cut(s)	248, 433, 583
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	2 cut(s)	17, 280
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	216, 302, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.