Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015926.1

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Reverse (-)

11770 .. 12189

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015926.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgaacattgttcttgttcccgctccctccatctgctatttcccgctccctccatccagtcccgacaatgaagtcaaccatagcaatctgcgaagtcgacatctgctagttcagctccacctccttcctatttttcttcttcctcccaaaaccccaaacttcactcccattcgttcattcaacaacaacaacaacaacaaaacccttatttctgtaaaccctaagtcaagctttcgaattagagcttccgccgccagcgataatagccaaccgccgtggtgggcgaacctgttggccgcccaagttttgggatccaataaagttctcagattgatctccggtgccaccgctagccccattggccagtacgtgtcggaacctgtcacttttcttcattctctctttgcaatatacttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

10.12

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	418
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccBSI	CCGCTC	2 cut(s)	23, 46
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	7 cut(s)	21, 44, 249, 252, 272, 297, 348
AclWI	GGATC	2 cut(s)	306, 319
AcoI	YGGCCR	2 cut(s)	294, 361
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	3 cut(s)	115, 231, 245
AluI	AGCT	3 cut(s)	115, 231, 245
AlwI	GGATC	2 cut(s)	306, 319
AoxI	GGCC	2 cut(s)	294, 361
AsuII	TTCGAA	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	341
BccI	CCATC	2 cut(s)	38, 61
BceAI	ACGGC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	107, 351
BglI	GCCNNNNNGGC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	252, 297
BlsI	GCNGC	2 cut(s)	253, 298
BmiI	GGNNCC	3 cut(s)	313, 343, 378
BmtI	GCTAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	57, 364
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	340
BseNI	ACTGG	2 cut(s)	57, 364
BshFI	GGCC	2 cut(s)	296, 363
BshNI	GGYRCC	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	296, 363
Bsp119I	TTCGAA	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	311, 333
BspACI	CCGC	7 cut(s)	21, 44, 249, 252, 272, 297, 348
BspANI	GGCC	2 cut(s)	296, 363
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	313, 343, 378
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	306, 319
BspT104I	TTCGAA	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	341
BsrBI	CCGCTC	2 cut(s)	23, 46
BsrI	ACTGG	2 cut(s)	57, 364
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	311, 333
BstBAI	YACGTR	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	256, 352
BstDEI	CTNAG	2 cut(s)	222, 326
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	314, 336
BstMBI	GATC	2 cut(s)	311, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 251, 264, 360
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	296, 363
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	256, 352
Csp6I	GTAC	1 cut(s)	367
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviJI	RGCY	7 cut(s)	115, 231, 245, 267, 296, 354, 363
CviKI_1	RGCY	7 cut(s)	115, 231, 245, 267, 296, 354, 363
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	222, 326
DpnI	GATC	2 cut(s)	313, 335
DpnII	GATC	2 cut(s)	311, 333
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	2 cut(s)	294, 361
EciI	GGCGGA	1 cut(s)	238
FaiI	YATR	3 cut(s)	81, 412, 418
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	45
FauI	CCCGC	2 cut(s)	28, 51
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	252, 297
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	252, 297
FspBI	CTAG	2 cut(s)	107, 351
GluI	GCNGC	2 cut(s)	252, 297
HaeIII	GGCC	2 cut(s)	296, 363
HapII	CCGG	1 cut(s)	339
HincII	GTYRAC	2 cut(s)	76, 98
HindII	GTYRAC	2 cut(s)	76, 98
HindIII	AAGCTT	1 cut(s)	229
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	3 cut(s)	76, 98, 217
Hpy188I	TCNGA	2 cut(s)	329, 376
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	3 cut(s)	76, 98, 217
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 251, 264, 360
HpyF3I	CTNAG	2 cut(s)	222, 326
HpySE526I	ACGT	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	311, 333
LmnI	GCTCC	3 cut(s)	28, 51, 120
LpnPI	CCDG	6 cut(s)	70, 268, 302, 352, 377, 393
MaeI	CTAG	2 cut(s)	107, 351
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	313, 335
MbiI	CCGCTC	2 cut(s)	23, 46
MboI	GATC	2 cut(s)	311, 333
MboII	GAAGA	3 cut(s)	128, 131, 383
MflI	RGATCY	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	37, 60, 131, 153
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspI	CCGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	112, 251, 264, 360
NdeII	GATC	2 cut(s)	311, 333
NheI	GCTAGC	1 cut(s)	350
NlaIV	GGNNCC	3 cut(s)	313, 343, 378
NmuCI	GTSAC	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	253, 298
Ppu21I	YACGTR	1 cut(s)	370
PsiI	TTATAA	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	313, 343, 378
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SalI	GTCGAC	1 cut(s)	96
SatI	GCNGC	2 cut(s)	252, 297
Sau3AI	GATC	2 cut(s)	311, 333
SetI	ASST	7 cut(s)	117, 123, 233, 247, 291, 372, 382
SfuI	TTCGAA	1 cut(s)	235
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	7 cut(s)	21, 44, 249, 252, 272, 297, 348
SspMI	CTAG	2 cut(s)	107, 351
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	97, 235
TasI	AATT	1 cut(s)	237
TauI	GCSGC	2 cut(s)	254, 299
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	4 cut(s)	17, 84, 165, 383
Van91I	CCANNNNNTGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	2 cut(s)	107, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.