Rroxscaffold_7G00165560

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002836
Physical Location & Seq
Forward (+)
7259100 .. 7261892
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165560.1

Sequence Viewer

Length: 1119 bp
ATGCGAAGTCGACATCTGCTAGTTCAGCTCCACCTCCTTCCTATTTTTCTTCTTCCTCCCGAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAAAACCCTTATTTACGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTCGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCATATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCGGTATGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTTTGACTGTTTAAGTTTTGGTGATAGAATTTGTGTAGAAAGATATCGAAATAGTAAGGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCATTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACAGTTTTCCAAAGTGCGAGCCTTTGCCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGCGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGTCGGTAGTTATGGTATGCTTAGAGTGGAACCGGTTCCGTCTTATACACTTCAGATCACCAAAGATAAGTTATTTATTGAATTTGCTGACTCGCAGACCTTGTGGCCCTTCTCGATCTGTTTAACAATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

372

Amino Acids

41.25

Weight (kDa)

9.48

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 130 - 326 2.7e-09 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 217
AccI GTMKAC 1 cut(s) 10
AciI CCGC 7 cut(s) 159, 162, 182, 207, 258, 808, 811
AclWI GGATC 3 cut(s) 216, 229, 516
AcoI YGGCCR 2 cut(s) 271, 465
AcsI RAATTY 2 cut(s) 360, 1064
AcuI CTGAAG 3 cut(s) 807, 873, 1019
AfiI CCNNNNNNNGG 3 cut(s) 217, 273, 810
AgeI ACCGGT 1 cut(s) 1015
AgsI TTSAA 2 cut(s) 94, 1064
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
AluBI AGCT 6 cut(s) 28, 141, 155, 215, 676, 725
AluI AGCT 6 cut(s) 28, 141, 155, 215, 676, 725
Alw26I GTCTC 2 cut(s) 487, 968
AlwI GGATC 3 cut(s) 216, 229, 516
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 3 cut(s) 271, 465, 1088
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 360, 1064
AsiGI ACCGGT 1 cut(s) 1015
Asp700I GAANNNNTTC 2 cut(s) 858, 1017
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 680, 1089
AsuHPI GGTGA 2 cut(s) 365, 1033
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 712
BccI CCATC 2 cut(s) 499, 566
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 487, 968
BfaI CTAG 5 cut(s) 20, 261, 407, 557, 677
BfmI CTRYAG 1 cut(s) 711
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 3 cut(s) 162, 726, 809
BlsI GCNGC 3 cut(s) 163, 727, 810
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 680, 1089
BmiI GGNNCC 5 cut(s) 223, 253, 288, 1014, 1020
BmsI GCATC 1 cut(s) 650
BmtI GCTAGC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 589, 621
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 185
BsaWI WCCGGW 2 cut(s) 248, 1015
BsaXI ACNNNNNCTCC 4 cut(s) 592, 622, 831, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 273, 810
Bse118I RCCGGY 2 cut(s) 273, 1015
Bse1I ACTGG 2 cut(s) 845, 956
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 3 cut(s) 217, 273, 810
BseNI ACTGG 2 cut(s) 845, 956
BseRI GAGGAG 2 cut(s) 594, 597
BseXI GCAGC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 562
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 3 cut(s) 273, 467, 1090
BshNI GGYRCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 1015
BsiSI CCGG 3 cut(s) 249, 274, 1016
BslI CCNNNNNNNGG 3 cut(s) 217, 273, 810
BsmAI GTCTC 2 cut(s) 487, 968
BsnI GGCC 3 cut(s) 273, 467, 1090
Bsp143I GATC 5 cut(s) 221, 243, 508, 1038, 1098
BspACI CCGC 7 cut(s) 159, 162, 182, 207, 258, 808, 811
BspANI GGCC 3 cut(s) 273, 467, 1090
BspLI GGNNCC 5 cut(s) 223, 253, 288, 1014, 1020
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 216, 229, 516
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 273, 1015
BsrI ACTGG 2 cut(s) 845, 956
BssAI RCCGGY 2 cut(s) 273, 1015
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 5 cut(s) 221, 243, 508, 1038, 1098
Bst4CI ACNGT 4 cut(s) 341, 690, 745, 960
Bst6I CTCTTC 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 6 cut(s) 166, 207, 262, 652, 718, 760
BstDEI CTNAG 1 cut(s) 1004
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 510
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 5 cut(s) 224, 246, 511, 1041, 1101
BstMAI GTCTC 2 cut(s) 487, 968
BstMBI GATC 5 cut(s) 221, 243, 508, 1038, 1098
BstMWI GCNNNNNNNGC 8 cut(s) 25, 161, 174, 270, 575, 647, 722, 817
BstNSI RCATGY 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 711
BstSNI TACGTA 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 3 cut(s) 273, 467, 1090
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 852
Cac8I GCNNGC 6 cut(s) 166, 207, 262, 652, 718, 760
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 1 cut(s) 578
Cfr10I RCCGGY 2 cut(s) 273, 1015
Cfr13I GGNCC 2 cut(s) 680, 1089
CspAI ACCGGT 1 cut(s) 1015
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviAII CATG 2 cut(s) 497, 871
DdeI CTNAG 1 cut(s) 1004
DpnI GATC 5 cut(s) 223, 245, 510, 1040, 1100
DpnII GATC 5 cut(s) 221, 243, 508, 1038, 1098
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 2 cut(s) 271, 465
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
EciI GGCGGA 1 cut(s) 148
Eco105I TACGTA 1 cut(s) 124
Eco32I GATATC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 3 cut(s) 807, 873, 1019
EcoRV GATATC 1 cut(s) 377
FaeI CATG 2 cut(s) 500, 874
FalI AAGNNNNNCTT 4 cut(s) 511, 543, 846, 878
FatI CATG 2 cut(s) 496, 870
FauI CCCGC 1 cut(s) 214
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 162, 726, 809
FokI GGATG 1 cut(s) 517
Fsp4HI GCNGC 3 cut(s) 162, 726, 809
FspBI CTAG 5 cut(s) 20, 261, 407, 557, 677
GlaI GCGC 1 cut(s) 577
GluI GCNGC 3 cut(s) 162, 726, 809
GsaI CCCAGC 1 cut(s) 566
HaeIII GGCC 3 cut(s) 273, 467, 1090
HapII CCGG 3 cut(s) 249, 274, 1016
HhaI GCGC 1 cut(s) 578
Hin1II CATG 2 cut(s) 500, 874
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HincII GTYRAC 2 cut(s) 11, 963
HindII GTYRAC 2 cut(s) 11, 963
HindIII AAGCTT 2 cut(s) 139, 213
HinfI GANTC 1 cut(s) 1073
HpaI GTTAAC 1 cut(s) 963
HpaII CCGG 3 cut(s) 249, 274, 1016
HphI GGTGA 2 cut(s) 365, 1033
Hpy166II GTNNAC 5 cut(s) 11, 127, 460, 693, 963
Hpy188I TCNGA 4 cut(s) 146, 226, 286, 1038
Hpy188III TCNNGA 4 cut(s) 59, 311, 537, 1096
Hpy8I GTNNAC 5 cut(s) 11, 127, 460, 693, 963
HpyAV CCTTC 4 cut(s) 47, 92, 694, 1102
HpyCH4III ACNGT 4 cut(s) 341, 690, 745, 960
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 5 cut(s) 569, 614, 641, 797, 923
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 161, 174, 270, 575, 647, 722, 817
HpyF3I CTNAG 1 cut(s) 1004
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 500, 874
HspAI GCGC 1 cut(s) 576
KspAI GTTAAC 1 cut(s) 963
Kzo9I GATC 5 cut(s) 221, 243, 508, 1038, 1098
LmnI GCTCC 2 cut(s) 33, 825
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 1 cut(s) 650
MaeI CTAG 5 cut(s) 20, 261, 407, 557, 677
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 3 cut(s) 292, 414, 426
MalI GATC 5 cut(s) 223, 245, 510, 1040, 1100
MboI GATC 5 cut(s) 221, 243, 508, 1038, 1098
MboII GAAGA 6 cut(s) 41, 44, 293, 531, 626, 800
MfeI CAATTG 2 cut(s) 512, 978
MflI RGATCY 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 8 cut(s) 147, 326, 360, 512, 531, 666, 978, 1064
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 7 cut(s) 44, 66, 417, 615, 618, 876, 901
Mox20I TGGCCA 1 cut(s) 467
MroXI GAANNNNTTC 2 cut(s) 858, 1017
MscI TGGCCA 1 cut(s) 467
MseI TTAA 7 cut(s) 344, 530, 665, 672, 734, 962, 1106
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 3 cut(s) 249, 274, 1016
MunI CAATTG 2 cut(s) 512, 978
MwoI GCNNNNNNNGC 8 cut(s) 25, 161, 174, 270, 575, 647, 722, 817
NdeII GATC 5 cut(s) 221, 243, 508, 1038, 1098
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 500, 874
NlaIV GGNNCC 5 cut(s) 223, 253, 288, 1014, 1020
NmeAIII GCCGAG 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 292, 426
NspI RCATGY 1 cut(s) 500
PdmI GAANNNNTTC 2 cut(s) 858, 1017
PflMI CCANNNNNTGG 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 1015
PkrI GCNGC 3 cut(s) 163, 727, 810
PleI GAGTC 1 cut(s) 1067
PpsI GAGTC 1 cut(s) 1067
Ppu21I YACGTR 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 562
PspN4I GGNNCC 5 cut(s) 223, 253, 288, 1014, 1020
PspPI GGNCC 2 cut(s) 680, 1089
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 725
SalI GTCGAC 1 cut(s) 9
SaqAI TTAA 7 cut(s) 344, 530, 665, 672, 734, 962, 1106
SatI GCNGC 3 cut(s) 162, 726, 809
Sau3AI GATC 5 cut(s) 221, 243, 508, 1038, 1098
Sau96I GGNCC 2 cut(s) 680, 1089
SchI GAGTC 1 cut(s) 1067
SfaNI GCATC 1 cut(s) 650
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 1 cut(s) 680
SnaBI TACGTA 1 cut(s) 124
Sse9I AATT 8 cut(s) 147, 326, 360, 512, 531, 666, 978, 1064
SsiI CCGC 7 cut(s) 159, 162, 182, 207, 258, 808, 811
SspMI CTAG 5 cut(s) 20, 261, 407, 557, 677
TaaI ACNGT 4 cut(s) 341, 690, 745, 960
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 10, 312, 379, 1097
TasI AATT 8 cut(s) 147, 326, 360, 512, 531, 666, 978, 1064
TauI GCSGC 2 cut(s) 164, 811
Tru1I TTAA 7 cut(s) 344, 530, 665, 672, 734, 962, 1106
Tru9I TTAA 7 cut(s) 344, 530, 665, 672, 734, 962, 1106
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 2 cut(s) 292, 426
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 2 cut(s) 292, 426
TspDTI ATGAA 5 cut(s) 78, 293, 431, 538, 877
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 1 cut(s) 852
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 2 cut(s) 360, 1064
XceI RCATGY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 2 cut(s) 858, 1017
XspI CTAG 5 cut(s) 20, 261, 407, 557, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.