RLG00000023906

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002836
Physical Location & Seq
Reverse (-)
29824817 .. 29825560
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023906

Sequence Viewer

Length: 345 bp
ATGACGAGGCGAATCTTCAACCACTTGGGCGACGTCGGGAAGTGGCCATATGGTGTAGTAATCTTCGGGTTACGCTCGCAGGTTAATGGGTCGAGGAACAAGTCGACTGATCTAGGTTCTTCTGGACCATTTGATCTGTTCATAGGTGCCAAAATTAAACATTTCGGCAAAAACTTTGGGTTCATGAACATTGTTCTTGTTCCCACTCCCTCCATATGCTATTTCTCGATCACTCCATCTAGTCCCGACAACGAAGACAACCATAGCAATCCGCGAAGTCGACATCTACTAGTTCAGCTCCACCTGCTTCCTATTTTTCTTCCTCCTCCGTCGCTCAGATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.72

Weight (kDa)

10.12

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 312
AatII GACGTC 1 cut(s) 36
Acc36I ACCTGC 2 cut(s) 70, 312
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 2 cut(s) 104, 280
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 272
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 33
AgsI TTSAA 1 cut(s) 19
AhlI ACTAGT 1 cut(s) 289
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
AlwI GGATC 1 cut(s) 333
AoxI GGCC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 46
BanI GGYRCC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 261
BccI CCATC 1 cut(s) 244
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 3 cut(s) 113, 240, 290
BfuAI ACCTGC 2 cut(s) 70, 312
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 146
BslFI GGGAC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 4 cut(s) 109, 133, 228, 338
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 46
BspFNI CGCG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 148
BspMI ACCTGC 2 cut(s) 70, 312
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 146
BssMI GATC 4 cut(s) 109, 133, 228, 338
BssNI GRCGYC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 4 cut(s) 112, 136, 231, 341
BstMBI GATC 4 cut(s) 109, 133, 228, 338
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstUI CGCG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 1 cut(s) 46
BveI ACCTGC 2 cut(s) 70, 312
Cac8I GCNNGC 1 cut(s) 77
CciI TCATGA 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 1 cut(s) 184
CviJI RGCY 2 cut(s) 46, 298
CviKI_1 RGCY 2 cut(s) 46, 298
DdeI CTNAG 1 cut(s) 335
DpnI GATC 4 cut(s) 111, 135, 230, 340
DpnII GATC 4 cut(s) 109, 133, 228, 338
EaeI YGGCCR 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 125
FaeI CATG 1 cut(s) 187
FaiI YATR 7 cut(s) 49, 51, 143, 185, 215, 217, 264
FaqI GGGAC 1 cut(s) 228
FatI CATG 1 cut(s) 183
FauNDI CATATG 2 cut(s) 49, 215
FblI GTMKAC 2 cut(s) 104, 280
FspBI CTAG 3 cut(s) 113, 240, 290
HaeIII GGCC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 187
HincII GTYRAC 2 cut(s) 105, 281
HindII GTYRAC 2 cut(s) 105, 281
HinfI GANTC 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 105, 281
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 5 cut(s) 37, 123, 184, 226, 245
Hpy8I GTNNAC 2 cut(s) 105, 281
Hpy99I CGWCG 3 cut(s) 35, 38, 334
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 4 cut(s) 109, 133, 228, 338
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 3 cut(s) 65, 108, 317
MaeI CTAG 3 cut(s) 113, 240, 290
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 69
MalI GATC 4 cut(s) 111, 135, 230, 340
MboI GATC 4 cut(s) 109, 133, 228, 338
MboII GAAGA 5 cut(s) 7, 55, 111, 266, 311
MflI RGATCY 1 cut(s) 338
MlsI TGGCCA 1 cut(s) 46
MluCI AATT 1 cut(s) 153
MluNI TGGCCA 1 cut(s) 46
MnlI CCTC 4 cut(s) 87, 220, 333, 336
Mox20I TGGCCA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 46
MseI TTAA 2 cut(s) 84, 156
Msp20I TGGCCA 1 cut(s) 46
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 304
NdeI CATATG 2 cut(s) 49, 215
NdeII GATC 4 cut(s) 109, 133, 228, 338
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 148
PagI TCATGA 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 338
SalI GTCGAC 2 cut(s) 103, 279
SaqAI TTAA 2 cut(s) 84, 156
Sau3AI GATC 4 cut(s) 109, 133, 228, 338
Sau96I GGNCC 1 cut(s) 125
SetI ASST 6 cut(s) 36, 84, 118, 148, 300, 306
SinI GGWCC 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 289
Sse9I AATT 1 cut(s) 153
SsiI CCGC 1 cut(s) 272
SspMI CTAG 3 cut(s) 113, 240, 290
TaiI ACGT 1 cut(s) 36
TaqI TCGA 4 cut(s) 92, 104, 227, 280
TasI AATT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 84, 156
Tru9I TTAA 2 cut(s) 84, 156
TspDTI ATGAA 3 cut(s) 130, 172, 200
TspGWI ACGGA 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 104, 280
XspI CTAG 3 cut(s) 113, 240, 290
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.