Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000048.1

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Forward (+)

22973 .. 24076

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000048.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgaacattgttcttgttcccgctccctccatctgctatttcccgctccctccatccagtcccgacaacgaagtcaaccatagcaatctgggaagtcgacatctgctagttcagctccacctccttcctcccaaaaccccaaacttcactccccttcgttcattcaacaacaacaacaacaaaacccttatttctgtaaaccctaaatcaagcttccgaattagagcttccgccgccagcgataatagccaaccgccgtggtgggcgaacctgttgcccgcccaagctttgggatccgataaagttctcagattgatctccggtgccaccgctagccccattggccagtacgtgtcggaacccgtcacttttcttcattctctcgaccccatagtcaaattggtatgctctattttgatggggctgggtgcagatggcgcaccagcccttgttcagttgagaactcctcctcctgcaatcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

161

Amino Acids

17.24

Weight (kDa)

9.44

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	71, 392
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccBSI	CCGCTC	2 cut(s)	23, 46
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	7 cut(s)	21, 44, 231, 234, 254, 279, 330
AclWI	GGATC	2 cut(s)	288, 301
AcoI	YGGCCR	1 cut(s)	343
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	166
AloI	GAACNNNNNNTCC	2 cut(s)	454, 486
AluBI	AGCT	4 cut(s)	115, 213, 227, 287
AluI	AGCT	4 cut(s)	115, 213, 227, 287
AlwI	GGATC	2 cut(s)	288, 301
AoxI	GGCC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	323
BccI	CCATC	4 cut(s)	38, 61, 412, 428
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BfaI	CTAG	2 cut(s)	107, 333
BglI	GCCNNNNNGGC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmiI	GGNNCC	3 cut(s)	295, 325, 360
BmtI	GCTAGC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BsaAI	YACGTR	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	57, 346
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	57, 346
BseRI	GAGGAG	2 cut(s)	456, 459
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	293, 315
BspACI	CCGC	7 cut(s)	21, 44, 231, 234, 254, 279, 330
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	295, 325, 360
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	288, 301
BspT107I	GGYRCC	1 cut(s)	323
BsrBI	CCGCTC	2 cut(s)	23, 46
BsrI	ACTGG	2 cut(s)	57, 346
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	293, 315
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	3 cut(s)	238, 279, 334
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	296, 318
BstMBI	GATC	2 cut(s)	293, 315
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 233, 246, 342, 437
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	3 cut(s)	238, 279, 334
CfoI	GCGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	239, 274
CviAII	CATG	1 cut(s)	483
CviJI	RGCY	9 cut(s)	115, 213, 227, 249, 287, 336, 345, 424, 446
CviKI_1	RGCY	9 cut(s)	115, 213, 227, 249, 287, 336, 345, 424, 446
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	295, 317
DpnII	GATC	2 cut(s)	293, 315
DrdI	GACNNNNNNGTC	2 cut(s)	71, 392
DseDI	GACNNNNNNGTC	2 cut(s)	71, 392
EaeI	YGGCCR	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	220
FaeI	CATG	1 cut(s)	486
FaiI	YATR	4 cut(s)	81, 392, 406, 484
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	482
FauI	CCCGC	3 cut(s)	28, 51, 286
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	107, 333
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	1 cut(s)	486
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	2 cut(s)	76, 98
HindII	GTYRAC	2 cut(s)	76, 98
HindIII	AAGCTT	2 cut(s)	211, 285
HpaII	CCGG	1 cut(s)	321
Hpy166II	GTNNAC	3 cut(s)	76, 98, 199
Hpy188I	TCNGA	4 cut(s)	218, 298, 311, 358
Hpy188III	TCNNGA	2 cut(s)	62, 383
Hpy8I	GTNNAC	3 cut(s)	76, 98, 199
HpyAV	CCTTC	2 cut(s)	134, 164
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	431, 476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 233, 246, 342, 437
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	486
HspAI	GCGC	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	293, 315
LmnI	GCTCC	3 cut(s)	28, 51, 120
LpnPI	CCDG	8 cut(s)	70, 74, 250, 284, 334, 359, 410, 456
MaeI	CTAG	2 cut(s)	107, 333
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	295, 317
MbiI	CCGCTC	2 cut(s)	23, 46
MboI	GATC	2 cut(s)	293, 315
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	2 cut(s)	219, 398
MluNI	TGGCCA	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	6 cut(s)	37, 60, 131, 138, 477, 480
Mox20I	TGGCCA	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	345
MspI	CCGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	112, 233, 246, 342, 437
NdeII	GATC	2 cut(s)	293, 315
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	486
NlaIV	GGNNCC	3 cut(s)	295, 325, 360
NmuCI	GTSAC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	295, 325, 360
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SalI	GTCGAC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	293, 315
SetI	ASST	7 cut(s)	117, 123, 215, 229, 273, 289, 354
Sse9I	AATT	2 cut(s)	219, 398
SsiI	CCGC	7 cut(s)	21, 44, 231, 234, 254, 279, 330
SspMI	CTAG	2 cut(s)	107, 333
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	97, 384
TasI	AATT	2 cut(s)	219, 398
TauI	GCSGC	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	17, 150, 365
Van91I	CCANNNNNTGG	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	2 cut(s)	107, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.