RchiOBHm_Chr2g0086241

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002836
Physical Location & Seq
Reverse (-)
1381788 .. 1384338
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46176

Sequence Viewer

Length: 1197 bp
ATGAACATTGTTCTTGTTCCCGCTCCCTCCATCTGCTATTTCCCGCTCCCTCCATCCAGTCCCGACAACGAAGTCAACCATAGCAATCTGCGAAGTCGACATCTGCTAGTTCAGCTCCACCTCCTTCCTATTTTTCTTCTTCCTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCTGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGAGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTTTGACTGTTTAAGTTTTGGTGATAGAATTTGGTTTGTGGGTTTTGGGTATTGTCGGTTTGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGTAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGTCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGTATGGGAAGTCATTGTTCATTTTTTTTTCCTACTAGTTCTCTTCTTCTCAATTTTAGCAATAAAAATCAAATCTGAGTTAGGTTTTTCAAAACCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

398

Amino Acids

44.18

Weight (kDa)

9.61

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 162 - 356 3.3e-06 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 407
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 2 cut(s) 23, 46
AccI GTMKAC 1 cut(s) 97
AciI CCGC 8 cut(s) 21, 44, 246, 249, 269, 294, 345, 898
AclWI GGATC 2 cut(s) 303, 606
AcoI YGGCCR 2 cut(s) 358, 555
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 897, 963
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 900
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 2 cut(s) 181, 1185
AhlI ACTAGT 1 cut(s) 1129
AloI GAACNNNNNNTCC 2 cut(s) 682, 714
AluBI AGCT 6 cut(s) 115, 228, 242, 302, 766, 815
AluI AGCT 6 cut(s) 115, 228, 242, 302, 766, 815
Alw26I GTCTC 2 cut(s) 577, 1058
AlwI GGATC 2 cut(s) 303, 606
AlwNI CAGNNNCTG 1 cut(s) 941
AoxI GGCC 2 cut(s) 358, 555
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 770
AsuHPI GGTGA 1 cut(s) 452
AsuNHI GCTAGC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 770
BalI TGGCCA 2 cut(s) 360, 557
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 802
BccI CCATC 5 cut(s) 38, 61, 589, 656, 1067
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BcoDI GTCTC 2 cut(s) 577, 1058
BcuI ACTAGT 1 cut(s) 1129
BfaI CTAG 6 cut(s) 107, 348, 497, 647, 767, 1130
BfmI CTRYAG 1 cut(s) 801
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 2 cut(s) 249, 816
BlsI GCNGC 2 cut(s) 250, 817
Bme18I GGWCC 1 cut(s) 770
BmgT120I GGNCC 1 cut(s) 770
BmiI GGNNCC 2 cut(s) 340, 375
BmsI GCATC 1 cut(s) 740
BmtI GCTAGC 1 cut(s) 351
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BsaAI YACGTR 1 cut(s) 367
BsaWI WCCGGW 2 cut(s) 335, 1189
BsaXI ACNNNNNCTCC 4 cut(s) 682, 712, 921, 951
Bsc4I CCNNNNNNNGG 1 cut(s) 900
Bse1I ACTGG 4 cut(s) 57, 361, 935, 1046
BseGI GGATG 2 cut(s) 53, 600
BseLI CCNNNNNNNGG 1 cut(s) 900
BseMII CTCAG 2 cut(s) 337, 1161
BseNI ACTGG 4 cut(s) 57, 361, 935, 1046
BseRI GAGGAG 2 cut(s) 684, 687
BseXI GCAGC 1 cut(s) 802
BseYI CCCAGC 1 cut(s) 652
BshFI GGCC 2 cut(s) 360, 557
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 336, 1190
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 900
BsmAI GTCTC 2 cut(s) 577, 1058
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 360, 557
Bsp143I GATC 3 cut(s) 308, 330, 598
BspACI CCGC 8 cut(s) 21, 44, 246, 249, 269, 294, 345, 898
BspANI GGCC 2 cut(s) 360, 557
BspCNI CTCAG 2 cut(s) 336, 1162
BspLI GGNNCC 2 cut(s) 340, 375
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 2 cut(s) 303, 606
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 2 cut(s) 23, 46
BsrI ACTGG 4 cut(s) 57, 361, 935, 1046
BssMI GATC 3 cut(s) 308, 330, 598
Bst4CI ACNGT 4 cut(s) 428, 780, 835, 1050
Bst6I CTCTTC 2 cut(s) 604, 1142
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 6 cut(s) 253, 294, 349, 742, 808, 850
BstDEI CTNAG 2 cut(s) 323, 1170
BstF5I GGATG 2 cut(s) 53, 600
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 3 cut(s) 311, 333, 601
BstMAI GTCTC 2 cut(s) 577, 1058
BstMBI GATC 3 cut(s) 308, 330, 598
BstMWI GCNNNNNNNGC 7 cut(s) 112, 248, 261, 357, 737, 812, 1088
BstNSI RCATGY 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 1 cut(s) 802
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 2 cut(s) 360, 557
BtsCI GGATG 2 cut(s) 53, 600
BtsIMutI CAGTG 1 cut(s) 942
Cac8I GCNNGC 6 cut(s) 253, 294, 349, 742, 808, 850
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 1 cut(s) 668
Cfr13I GGNCC 1 cut(s) 770
Csp6I GTAC 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 2 cut(s) 587, 961
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 323, 1170
DpnI GATC 3 cut(s) 310, 332, 600
DpnII GATC 3 cut(s) 308, 330, 598
DrdI GACNNNNNNGTC 2 cut(s) 71, 407
DseDI GACNNNNNNGTC 2 cut(s) 71, 407
EaeI YGGCCR 2 cut(s) 358, 555
Eam1104I CTCTTC 2 cut(s) 604, 1142
EarI CTCTTC 2 cut(s) 604, 1142
EciI GGCGGA 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 897, 963
FaeI CATG 2 cut(s) 590, 964
FalI AAGNNNNNCTT 4 cut(s) 601, 633, 936, 968
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 586, 960
FauI CCCGC 3 cut(s) 28, 51, 301
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 249, 816
FokI GGATG 2 cut(s) 40, 607
Fsp4HI GCNGC 2 cut(s) 249, 816
FspBI CTAG 6 cut(s) 107, 348, 497, 647, 767, 1130
GlaI GCGC 1 cut(s) 667
GluI GCNGC 2 cut(s) 249, 816
GsaI CCCAGC 1 cut(s) 656
HaeIII GGCC 2 cut(s) 360, 557
HapII CCGG 2 cut(s) 336, 1190
HhaI GCGC 1 cut(s) 668
Hin1II CATG 2 cut(s) 590, 964
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 3 cut(s) 76, 98, 1053
HindII GTYRAC 3 cut(s) 76, 98, 1053
HindIII AAGCTT 2 cut(s) 226, 300
HpaI GTTAAC 1 cut(s) 1053
HpaII CCGG 2 cut(s) 336, 1190
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 6 cut(s) 76, 98, 214, 550, 783, 1053
Hpy188I TCNGA 5 cut(s) 233, 313, 326, 373, 1171
Hpy188III TCNNGA 3 cut(s) 62, 398, 627
Hpy8I GTNNAC 6 cut(s) 76, 98, 214, 550, 783, 1053
HpyAV CCTTC 3 cut(s) 134, 179, 784
HpyCH4III ACNGT 4 cut(s) 428, 780, 835, 1050
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 5 cut(s) 704, 731, 887, 1013, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 112, 248, 261, 357, 737, 812, 1088
HpyF3I CTNAG 2 cut(s) 323, 1170
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 2 cut(s) 590, 964
HspAI GCGC 1 cut(s) 666
KspAI GTTAAC 1 cut(s) 1053
Kzo9I GATC 3 cut(s) 308, 330, 598
LmnI GCTCC 4 cut(s) 28, 51, 120, 915
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 1 cut(s) 740
MaeI CTAG 6 cut(s) 107, 348, 497, 647, 767, 1130
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 379, 504, 516
MalI GATC 3 cut(s) 310, 332, 600
MbiI CCGCTC 2 cut(s) 23, 46
MboI GATC 3 cut(s) 308, 330, 598
MboII GAAGA 8 cut(s) 128, 131, 380, 621, 716, 890, 1129, 1132
MfeI CAATTG 2 cut(s) 602, 1068
MflI RGATCY 1 cut(s) 308
MlsI TGGCCA 2 cut(s) 360, 557
MluCI AATT 8 cut(s) 234, 413, 447, 602, 621, 756, 1068, 1146
MluNI TGGCCA 2 cut(s) 360, 557
MmeI TCCRAC 1 cut(s) 351
Mox20I TGGCCA 2 cut(s) 360, 557
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 2 cut(s) 360, 557
MseI TTAA 6 cut(s) 431, 620, 755, 762, 824, 1052
MslI CAYNNNNRTG 1 cut(s) 1096
Msp20I TGGCCA 2 cut(s) 360, 557
MspA1I CMGCKG 2 cut(s) 271, 815
MspI CCGG 2 cut(s) 336, 1190
MunI CAATTG 2 cut(s) 602, 1068
MwoI GCNNNNNNNGC 7 cut(s) 112, 248, 261, 357, 737, 812, 1088
NdeII GATC 3 cut(s) 308, 330, 598
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 2 cut(s) 590, 964
NlaIV GGNNCC 2 cut(s) 340, 375
NmeAIII GCCGAG 1 cut(s) 606
NmuCI GTSAC 2 cut(s) 379, 516
NspI RCATGY 1 cut(s) 590
PdmI GAANNNNTTC 1 cut(s) 948
PkrI GCNGC 2 cut(s) 250, 817
Ppu21I YACGTR 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 340, 375
PspPI GGNCC 1 cut(s) 770
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 1096
SalI GTCGAC 1 cut(s) 96
SaqAI TTAA 6 cut(s) 431, 620, 755, 762, 824, 1052
SatI GCNGC 2 cut(s) 249, 816
Sau3AI GATC 3 cut(s) 308, 330, 598
Sau96I GGNCC 1 cut(s) 770
SfaNI GCATC 1 cut(s) 740
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 1 cut(s) 1096
SpeI ACTAGT 1 cut(s) 1129
Sse9I AATT 8 cut(s) 234, 413, 447, 602, 621, 756, 1068, 1146
SsiI CCGC 8 cut(s) 21, 44, 246, 249, 269, 294, 345, 898
SspMI CTAG 6 cut(s) 107, 348, 497, 647, 767, 1130
TaaI ACNGT 4 cut(s) 428, 780, 835, 1050
TaiI ACGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 97, 399
TasI AATT 8 cut(s) 234, 413, 447, 602, 621, 756, 1068, 1146
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 6 cut(s) 431, 620, 755, 762, 824, 1052
Tru9I TTAA 6 cut(s) 431, 620, 755, 762, 824, 1052
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 2 cut(s) 379, 516
TseI GCWGC 1 cut(s) 815
Tsp45I GTSAC 2 cut(s) 379, 516
TspDTI ATGAA 6 cut(s) 17, 165, 380, 628, 967, 1103
TspRI CASTG 1 cut(s) 942
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 6 cut(s) 107, 348, 497, 647, 767, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.