Rw4G018660

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002836
Physical Location & Seq
Forward (+)
41358973 .. 41366617
7645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018660.1

Sequence Viewer

Length: 1164 bp
ATGATCTTCACACATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTCCTACTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCCGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACGCTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTGTCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGTTTTCTTTGCCTACTTCCGTAGGATCTTCAAAAATATTTTTAGCCACGCAGAGCAGATTTCACAGGCGATGATTGCAAGAGGTTTCAGAGGGGACTGCAACACGCATAAAATGTACCTGTTATCAGATCCATCCATTGGTATAGCAGATGTTGTTTCTTTGTTATGCCTGGCTGGTATTATAGGTGCTGCGGTTTGGTCGGACTTTCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

387

Amino Acids

42.64

Weight (kDa)

9.82

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 107 - 349 5.1e-19 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 2 cut(s) 241, 1085
AciI CCGC 7 cut(s) 183, 186, 206, 231, 282, 772, 1139
AclWI GGATC 5 cut(s) 240, 253, 480, 980, 1070
AcoI YGGCCR 2 cut(s) 295, 429
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 2 cut(s) 302, 1064
AfiI CCNNNNNNNGG 3 cut(s) 241, 774, 1085
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 2 cut(s) 103, 979
AjnI CCWGG 1 cut(s) 1116
AloI GAACNNNNNNTCC 2 cut(s) 556, 588
AluBI AGCT 5 cut(s) 165, 179, 239, 640, 689
AluI AGCT 5 cut(s) 165, 179, 239, 640, 689
Alw26I GTCTC 3 cut(s) 451, 906, 932
AlwI GGATC 5 cut(s) 240, 253, 480, 980, 1070
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 2 cut(s) 295, 429
ApeKI GCWGC 2 cut(s) 689, 1136
Asp700I GAANNNNTTC 1 cut(s) 822
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 644
AsuNHI GCTAGC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 644
BalI TGGCCA 2 cut(s) 297, 431
BamHI GGATCC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 676, 1123
BccI CCATC 4 cut(s) 29, 463, 530, 1087
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 740, 774
BciT130I CCWGG 1 cut(s) 1118
BcoDI GTCTC 3 cut(s) 451, 906, 932
BfaI CTAG 4 cut(s) 285, 371, 521, 641
BfmI CTRYAG 1 cut(s) 675
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 3 cut(s) 186, 690, 1137
BlsI GCNGC 3 cut(s) 187, 691, 1138
Bme1390I CCNGG 1 cut(s) 1118
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 3 cut(s) 247, 277, 312
BmrFI CCNGG 1 cut(s) 1118
BmsI GCATC 1 cut(s) 614
BmtI GCTAGC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BsaAI YACGTR 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 4 cut(s) 556, 586, 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 774, 1085
Bse1I ACTGG 3 cut(s) 298, 809, 920
BseBI CCWGG 1 cut(s) 1118
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 474, 1079
BseLI CCNNNNNNNGG 3 cut(s) 241, 774, 1085
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 298, 809, 920
BseRI GAGGAG 2 cut(s) 558, 561
BseXI GCAGC 2 cut(s) 676, 1123
BseYI CCCAGC 1 cut(s) 526
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 2 cut(s) 297, 431
BshNI GGYRCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 1055
BslI CCNNNNNNNGG 3 cut(s) 241, 774, 1085
BsmAI GTCTC 3 cut(s) 451, 906, 932
BsmFI GGGAC 1 cut(s) 1055
BsnI GGCC 2 cut(s) 297, 431
Bsp143I GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
BspACI CCGC 7 cut(s) 183, 186, 206, 231, 282, 772, 1139
BspANI GGCC 2 cut(s) 297, 431
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 247, 277, 312
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 5 cut(s) 240, 253, 480, 980, 1070
BspT107I GGYRCC 1 cut(s) 275
BsrI ACTGG 3 cut(s) 298, 809, 920
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 4 cut(s) 31, 654, 709, 924
Bst6I CTCTTC 1 cut(s) 478
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 6 cut(s) 190, 231, 286, 616, 682, 724
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 474, 1079
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 6 cut(s) 6, 248, 270, 475, 975, 1078
BstMAI GTCTC 3 cut(s) 451, 906, 932
BstMBI GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
BstMWI GCNNNNNNNGC 7 cut(s) 185, 198, 294, 539, 611, 686, 1022
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 676, 1123
BstX2I RGATCY 3 cut(s) 245, 972, 1075
BstYI RGATCY 3 cut(s) 245, 972, 1075
BsuRI GGCC 2 cut(s) 297, 431
BtgI CCRYGG 1 cut(s) 209
BtgZI GCGATG 2 cut(s) 7, 1031
BtsCI GGATG 2 cut(s) 474, 1079
BtsIMutI CAGTG 1 cut(s) 816
Cac8I GCNNGC 6 cut(s) 190, 231, 286, 616, 682, 724
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 301, 1063
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviAII CATG 2 cut(s) 461, 835
CviQI GTAC 2 cut(s) 301, 1063
DdeI CTNAG 1 cut(s) 260
DpnI GATC 6 cut(s) 5, 247, 269, 474, 974, 1077
DpnII GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 295, 429
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
EciI GGCGGA 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 1116
FaeI CATG 2 cut(s) 464, 838
FalI AAGNNNNNCTT 4 cut(s) 475, 507, 810, 842
FaqI GGGAC 1 cut(s) 1055
FatI CATG 2 cut(s) 460, 834
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 186, 690, 1137
FokI GGATG 2 cut(s) 481, 1066
Fsp4HI GCNGC 3 cut(s) 186, 690, 1137
FspBI CTAG 4 cut(s) 285, 371, 521, 641
GlaI GCGC 1 cut(s) 541
GluI GCNGC 3 cut(s) 186, 690, 1137
GsaI CCCAGC 1 cut(s) 530
HaeIII GGCC 2 cut(s) 297, 431
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 542
Hin1II CATG 2 cut(s) 464, 838
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 927
HindII GTYRAC 1 cut(s) 927
HindIII AAGCTT 2 cut(s) 163, 237
HinfI GANTC 1 cut(s) 345
HpaI GTTAAC 1 cut(s) 927
HpaII CCGG 1 cut(s) 273
Hpy166II GTNNAC 4 cut(s) 151, 424, 657, 927
Hpy188I TCNGA 7 cut(s) 170, 250, 263, 310, 1037, 1075, 1150
Hpy188III TCNNGA 2 cut(s) 335, 501
Hpy8I GTNNAC 4 cut(s) 151, 424, 657, 927
HpyAV CCTTC 2 cut(s) 101, 658
HpyCH4III ACNGT 4 cut(s) 31, 654, 709, 924
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 7 cut(s) 533, 578, 605, 761, 887, 1025, 1047
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 198, 294, 539, 611, 686, 1022
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 464, 838
HspAI GCGC 1 cut(s) 540
KspAI GTTAAC 1 cut(s) 927
Kzo9I GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
LmnI GCTCC 2 cut(s) 23, 789
Lsp1109I GCAGC 2 cut(s) 676, 1123
LweI GCATC 1 cut(s) 614
MaeI CTAG 4 cut(s) 285, 371, 521, 641
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 31, 316, 390
MalI GATC 6 cut(s) 5, 247, 269, 474, 974, 1077
MboI GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
MboII GAAGA 5 cut(s) 317, 495, 590, 764, 967
MfeI CAATTG 2 cut(s) 476, 942
MflI RGATCY 3 cut(s) 245, 972, 1075
MlsI TGGCCA 2 cut(s) 297, 431
MluCI AATT 6 cut(s) 171, 350, 476, 495, 630, 942
MluNI TGGCCA 2 cut(s) 297, 431
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 2 cut(s) 288, 1128
MnlI CCTC 8 cut(s) 69, 381, 579, 582, 840, 865, 1022, 1031
Mox20I TGGCCA 2 cut(s) 297, 431
MroXI GAANNNNTTC 1 cut(s) 822
MscI TGGCCA 2 cut(s) 297, 431
MseI TTAA 5 cut(s) 494, 629, 636, 698, 926
Msp20I TGGCCA 2 cut(s) 297, 431
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 1118
MunI CAATTG 2 cut(s) 476, 942
MvaI CCWGG 1 cut(s) 1118
MwoI GCNNNNNNNGC 7 cut(s) 185, 198, 294, 539, 611, 686, 1022
NdeII GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 2 cut(s) 464, 838
NlaIV GGNNCC 3 cut(s) 247, 277, 312
NmeAIII GCCGAG 1 cut(s) 480
NmuCI GTSAC 2 cut(s) 316, 390
NspI RCATGY 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 822
PflMI CCANNNNNTGG 2 cut(s) 241, 1085
PkrI GCNGC 3 cut(s) 187, 691, 1138
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 1116
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 1 cut(s) 1116
PspN4I GGNNCC 3 cut(s) 247, 277, 312
PspPI GGNCC 1 cut(s) 644
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 3 cut(s) 245, 972, 1075
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 2 cut(s) 302, 1064
RsaNI GTAC 2 cut(s) 301, 1063
SaqAI TTAA 5 cut(s) 494, 629, 636, 698, 926
SatI GCNGC 3 cut(s) 186, 690, 1137
Sau3AI GATC 6 cut(s) 3, 245, 267, 472, 972, 1075
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 1118
SfaNI GCATC 1 cut(s) 614
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 1 cut(s) 644
Sse9I AATT 6 cut(s) 171, 350, 476, 495, 630, 942
SsiI CCGC 7 cut(s) 183, 186, 206, 231, 282, 772, 1139
SspI AATATT 1 cut(s) 985
SspMI CTAG 4 cut(s) 285, 371, 521, 641
StyD4I CCNGG 1 cut(s) 1116
TaaI ACNGT 4 cut(s) 31, 654, 709, 924
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 336
TasI AATT 6 cut(s) 171, 350, 476, 495, 630, 942
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 5 cut(s) 494, 629, 636, 698, 926
Tru9I TTAA 5 cut(s) 494, 629, 636, 698, 926
TscAI CASTG 1 cut(s) 816
TseFI GTSAC 2 cut(s) 316, 390
TseI GCWGC 2 cut(s) 689, 1136
Tsp45I GTSAC 2 cut(s) 316, 390
TspDTI ATGAA 4 cut(s) 87, 317, 502, 841
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 1 cut(s) 816
Van91I CCANNNNNTGG 2 cut(s) 241, 1085
VpaK11BI GGWCC 1 cut(s) 644
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 4 cut(s) 285, 371, 521, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.