Rh5DG323400

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002836
Physical Location & Seq
Forward (+)
42267964 .. 42272660
4697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG323400.1

Sequence Viewer

Length: 1044 bp
ATGCATGATCTGATTATTCGACAGCAGTCACAGCACTCAATAGAATTAGATAACTCCAAGAAAAGTCAGAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCTGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGAGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTTTGACTGTTTAAGTTTTGGTGATAGAATTTGGTTTGTGGGTTTTGGGTATTGTCGGTTTGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGTAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGTCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGTATGGGAAGATTTCATTGTTCATTTTTTTTTCCTACTAGTTCTCTTCTTCTCAATTTTAGCAATAAAAATCAAATCTGAGTTAGGTTTTTCAAAACCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

347

Amino Acids

38.64

Weight (kDa)

9.11

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 110 - 304 1.2e-06 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 6 cut(s) 90, 93, 113, 138, 189, 742
AclWI GGATC 2 cut(s) 147, 450
AcoI YGGCCR 2 cut(s) 202, 399
AcsI RAATTY 1 cut(s) 291
AcuI CTGAAG 2 cut(s) 741, 807
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 744
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 1032
AhlI ACTAGT 1 cut(s) 976
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 5 cut(s) 72, 86, 146, 610, 659
AluI AGCT 5 cut(s) 72, 86, 146, 610, 659
Alw26I GTCTC 2 cut(s) 421, 902
AlwI GGATC 2 cut(s) 147, 450
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 2 cut(s) 202, 399
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 614
BalI TGGCCA 2 cut(s) 204, 401
BanI GGYRCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 646
BccI CCATC 3 cut(s) 433, 500, 911
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 2 cut(s) 421, 902
BcuI ACTAGT 1 cut(s) 976
BfaI CTAG 5 cut(s) 192, 341, 491, 611, 977
BfmI CTRYAG 1 cut(s) 645
BglI GCCNNNNNGGC 1 cut(s) 201
BisI GCNGC 2 cut(s) 93, 660
BlsI GCNGC 2 cut(s) 94, 661
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 184, 219
BmsI GCATC 1 cut(s) 584
BmtI GCTAGC 1 cut(s) 195
BoxI GACNNNNGTC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 523, 555
BsaAI YACGTR 1 cut(s) 211
BsaWI WCCGGW 2 cut(s) 179, 1036
BsaXI ACNNNNNCTCC 4 cut(s) 526, 556, 765, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse1I ACTGG 3 cut(s) 205, 779, 890
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMII CTCAG 2 cut(s) 181, 1008
BseNI ACTGG 3 cut(s) 205, 779, 890
BseRI GAGGAG 2 cut(s) 528, 531
BseXI GCAGC 1 cut(s) 646
BseYI CCCAGC 1 cut(s) 496
BshFI GGCC 2 cut(s) 204, 401
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 180, 1037
BslI CCNNNNNNNGG 1 cut(s) 744
BsmAI GTCTC 2 cut(s) 421, 902
BsnI GGCC 2 cut(s) 204, 401
Bsp143I GATC 4 cut(s) 7, 152, 174, 442
BspACI CCGC 6 cut(s) 90, 93, 113, 138, 189, 742
BspANI GGCC 2 cut(s) 204, 401
BspCNI CTCAG 2 cut(s) 180, 1009
BspLI GGNNCC 2 cut(s) 184, 219
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 2 cut(s) 147, 450
BspT107I GGYRCC 1 cut(s) 182
BsrI ACTGG 3 cut(s) 205, 779, 890
BssMI GATC 4 cut(s) 7, 152, 174, 442
Bst4CI ACNGT 4 cut(s) 272, 624, 679, 894
Bst6I CTCTTC 2 cut(s) 448, 989
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 6 cut(s) 97, 138, 193, 586, 652, 694
BstDEI CTNAG 2 cut(s) 167, 1017
BstF5I GGATG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 4 cut(s) 10, 155, 177, 445
BstMAI GTCTC 2 cut(s) 421, 902
BstMBI GATC 4 cut(s) 7, 152, 174, 442
BstMWI GCNNNNNNNGC 7 cut(s) 31, 92, 105, 201, 581, 656, 932
BstNSI RCATGY 1 cut(s) 434
BstPAI GACNNNNGTC 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 646
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 2 cut(s) 204, 401
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 786
Cac8I GCNNGC 6 cut(s) 97, 138, 193, 586, 652, 694
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 3 cut(s) 5, 431, 805
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 167, 1017
DpnI GATC 4 cut(s) 9, 154, 176, 444
DpnII GATC 4 cut(s) 7, 152, 174, 442
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 202, 399
Eam1104I CTCTTC 2 cut(s) 448, 989
EarI CTCTTC 2 cut(s) 448, 989
EciI GGCGGA 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 2 cut(s) 741, 807
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 434, 808
FalI AAGNNNNNCTT 4 cut(s) 445, 477, 780, 812
FatI CATG 3 cut(s) 4, 430, 804
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 93, 660
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 93, 660
FspBI CTAG 5 cut(s) 192, 341, 491, 611, 977
GlaI GCGC 1 cut(s) 511
GluI GCNGC 2 cut(s) 93, 660
GsaI CCCAGC 1 cut(s) 500
HaeIII GGCC 2 cut(s) 204, 401
HapII CCGG 2 cut(s) 180, 1037
HhaI GCGC 1 cut(s) 512
Hin1II CATG 3 cut(s) 8, 434, 808
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HincII GTYRAC 1 cut(s) 897
HindII GTYRAC 1 cut(s) 897
HindIII AAGCTT 1 cut(s) 144
HpaI GTTAAC 1 cut(s) 897
HpaII CCGG 2 cut(s) 180, 1037
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 394, 627, 897
Hpy188I TCNGA 7 cut(s) 12, 69, 77, 157, 170, 217, 1018
Hpy188III TCNNGA 2 cut(s) 242, 471
Hpy8I GTNNAC 3 cut(s) 394, 627, 897
HpyAV CCTTC 1 cut(s) 628
HpyCH4III ACNGT 4 cut(s) 272, 624, 679, 894
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 6 cut(s) 4, 548, 575, 731, 857, 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 92, 105, 201, 581, 656, 932
HpyF3I CTNAG 2 cut(s) 167, 1017
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 3 cut(s) 8, 434, 808
HspAI GCGC 1 cut(s) 510
KspAI GTTAAC 1 cut(s) 897
Kzo9I GATC 4 cut(s) 7, 152, 174, 442
LmnI GCTCC 1 cut(s) 759
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 1 cut(s) 584
MaeI CTAG 5 cut(s) 192, 341, 491, 611, 977
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 4 cut(s) 27, 223, 348, 360
MalI GATC 4 cut(s) 9, 154, 176, 444
MboI GATC 4 cut(s) 7, 152, 174, 442
MboII GAAGA 7 cut(s) 224, 465, 560, 734, 959, 976, 979
MfeI CAATTG 2 cut(s) 446, 912
MflI RGATCY 1 cut(s) 152
MlsI TGGCCA 2 cut(s) 204, 401
MluCI AATT 9 cut(s) 44, 78, 257, 291, 446, 465, 600, 912, 993
MluNI TGGCCA 2 cut(s) 204, 401
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 351, 549, 552, 810, 835, 937
Mox20I TGGCCA 2 cut(s) 204, 401
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 792
MscI TGGCCA 2 cut(s) 204, 401
MseI TTAA 6 cut(s) 275, 464, 599, 606, 668, 896
MslI CAYNNNNRTG 1 cut(s) 940
Msp20I TGGCCA 2 cut(s) 204, 401
MspA1I CMGCKG 2 cut(s) 115, 659
MspI CCGG 2 cut(s) 180, 1037
MunI CAATTG 2 cut(s) 446, 912
MwoI GCNNNNNNNGC 7 cut(s) 31, 92, 105, 201, 581, 656, 932
NdeII GATC 4 cut(s) 7, 152, 174, 442
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 3 cut(s) 8, 434, 808
NlaIV GGNNCC 2 cut(s) 184, 219
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 3 cut(s) 27, 223, 360
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 792
PkrI GCNGC 2 cut(s) 94, 661
Ppu21I YACGTR 1 cut(s) 211
PshAI GACNNNNGTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 496
PspN4I GGNNCC 2 cut(s) 184, 219
PspPI GGNCC 1 cut(s) 614
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 940
SaqAI TTAA 6 cut(s) 275, 464, 599, 606, 668, 896
SatI GCNGC 2 cut(s) 93, 660
Sau3AI GATC 4 cut(s) 7, 152, 174, 442
Sau96I GGNCC 1 cut(s) 614
SfaNI GCATC 1 cut(s) 584
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 940
SpeI ACTAGT 1 cut(s) 976
Sse9I AATT 9 cut(s) 44, 78, 257, 291, 446, 465, 600, 912, 993
SsiI CCGC 6 cut(s) 90, 93, 113, 138, 189, 742
SspMI CTAG 5 cut(s) 192, 341, 491, 611, 977
TaaI ACNGT 4 cut(s) 272, 624, 679, 894
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 19, 243
TasI AATT 9 cut(s) 44, 78, 257, 291, 446, 465, 600, 912, 993
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 6 cut(s) 275, 464, 599, 606, 668, 896
Tru9I TTAA 6 cut(s) 275, 464, 599, 606, 668, 896
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 3 cut(s) 27, 223, 360
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 3 cut(s) 27, 223, 360
TspDTI ATGAA 5 cut(s) 224, 472, 811, 943, 950
TspRI CASTG 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 1 cut(s) 291
XceI RCATGY 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 5 cut(s) 192, 341, 491, 611, 977
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.