Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Reverse (-)

11646870 .. 11650989

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G148500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAACTTCGCGTACCGTCCCATCACAACGGTCACATTCCCCTGTCTCCCACTAAACCCTAATCCCAAAACCCAAATTGCCCCAAAATTCACTCACCTGCGTTCACTGAACAAAACCCTTATACAAGTAAAGCCAAGATTAAGCCACCAAATTAGAGCCTCAGCAAGCGATAGTAGTCAAACCCCGTGGTGGGTGAACGTGTTGCCAACCAAAGCTTTCGGAGCCGAGAAATTTCTTCGGCTGATTTCAGGTGCCACCGCTAGCCCCATTTGCCAGTACGTGTCGGAACCCAGCACGTTTCTCCATTCTGTGGACCCCAGAATCAAATTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCAAGGTCACATATAATACTGCGTTTTGGATTAGTAGTATACTTGGCCGTTTTGTCAATATGGATTCTTCCAAGACATACATGGATGGACCAACTGGGAAGAGTGTCTTTGATTTCTGGAATTTTATTCATTACGTTGGGGCTGGGTTCAGATGGTGTGCCACCCCTTGTTCAGTTAAGAACCCCACCTCCTGCAATGATTGGATTATCAAATCTTCCTGCATCTCTGGGAGGTTACTCATATTTAATTATGAAGCTAGGGCCATTACATTTTACAAGGAAGGGGTTGTCTGTAGCAAGCACAGCTGCTTGCTTAACCTTTACTGTTTTTCAAAGTGCGAGCCTTTGCCTGACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACACGTCTTGGTGTGCCAGTGGCTGAAATAATTCTGACCCTCATGCTTTCATTGAGGTTCATCAATCTCGTGTTTGATGAGGTACGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAAACTGGGAACAGTTGACAATGATGGAAACACTGGATGTTTTCTTTGCCTACTTTCGTCGGATCTTCACAAATATCTTTAGCCATGCAGAGCAGATTTCGCAGGCAATGATTGTCAGAGGTTTTAGAGGGGACAGCAACGCTCATAAGATTTACTTGTTGTCAGATCCATCCATTGGAACATCAGATATCGTTTCCTTGTTAAGCCTGGTTACTGTAATAGGTGCTTCCGTTTTGTCTGACTACTTTCTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

381

Amino Acids

42.19

Weight (kDa)

9.93

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	251
AccB7I	CCANNNNNTGG	2 cut(s)	310, 1061
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	258, 748
AclWI	GGATC	2 cut(s)	956, 1046
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	3 cut(s)	86, 230, 480
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	14, 278, 852
AfiI	CCNNNNNNNGG	5 cut(s)	189, 190, 310, 750, 1061
AflIII	ACRYGT	3 cut(s)	198, 279, 770
AgsI	TTSAA	1 cut(s)	692
AjiI	CACGTC	1 cut(s)	773
AjnI	CCWGG	1 cut(s)	1092
AloI	GAACNNNNNNTCC	2 cut(s)	532, 564
AluBI	AGCT	3 cut(s)	215, 616, 665
AluI	AGCT	3 cut(s)	215, 616, 665
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	2 cut(s)	956, 1046
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	2 cut(s)	405, 620
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	3 cut(s)	86, 230, 480
Asp700I	GAANNNNTTC	1 cut(s)	798
AspS9I	GGNCC	3 cut(s)	313, 448, 620
AsuHPI	GGTGA	2 cut(s)	86, 205
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	313, 448
BanI	GGYRCC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	836
BbvCI	CCTCAGC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	5 cut(s)	29, 439, 506, 904, 1063
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	1094
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	4 cut(s)	261, 347, 617, 1136
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	1094
Bme18I	GGWCC	2 cut(s)	313, 448
BmgBI	CACGTC	1 cut(s)	773
BmgT120I	GGNCC	3 cut(s)	313, 448, 620
BmiI	GGNNCC	4 cut(s)	223, 253, 288, 315
BmrFI	CCNGG	1 cut(s)	1094
BmrI	ACTGGG	2 cut(s)	464, 901
BmsI	GCATC	1 cut(s)	590
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	2 cut(s)	464, 901
Bpu10I	CCTNAGC	1 cut(s)	160
BsaAI	YACGTR	2 cut(s)	280, 854
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	5 cut(s)	189, 190, 310, 750, 1061
Bse1I	ACTGG	5 cut(s)	274, 459, 785, 896, 924
Bse3DI	GCAATG	2 cut(s)	561, 999
BseBI	CCWGG	1 cut(s)	1094
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	3 cut(s)	450, 928, 1055
BseLI	CCNNNNNNNGG	5 cut(s)	189, 190, 310, 750, 1061
BseMI	GCAATG	2 cut(s)	561, 999
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	5 cut(s)	274, 459, 785, 896, 924
BseXI	GCAGC	1 cut(s)	652
BseYI	CCCAGC	2 cut(s)	290, 502
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	407, 622
BshNI	GGYRCC	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	3, 1031
BslI	CCNNNNNNNGG	5 cut(s)	189, 190, 310, 750, 1061
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	3, 1031
BsnI	GGCC	2 cut(s)	407, 622
Bsp143I	GATC	2 cut(s)	948, 1051
BspACI	CCGC	2 cut(s)	258, 748
BspANI	GGCC	2 cut(s)	407, 622
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	4 cut(s)	223, 253, 288, 315
BspMI	ACCTGC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	956, 1046
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	561, 999
BsrI	ACTGG	5 cut(s)	274, 459, 785, 896, 924
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	948, 1051
BssNAI	GTATAC	1 cut(s)	400
BssSI	CACGAG	1 cut(s)	836
Bst1107I	GTATAC	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	836
Bst2UI	CCWGG	1 cut(s)	1094
Bst4CI	ACNGT	5 cut(s)	17, 31, 685, 900, 1102
Bst6I	CTCTTC	1 cut(s)	454
BstBAI	YACGTR	2 cut(s)	280, 854
BstC8I	GCNNGC	6 cut(s)	166, 262, 658, 670, 700, 990
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	450, 928, 1055
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	951, 1054
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	948, 1051
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 270, 662, 985
BstNI	CCWGG	1 cut(s)	1094
BstSCI	CCNGG	1 cut(s)	1092
BstSFI	CTRYAG	1 cut(s)	651
BstSNI	TACGTA	1 cut(s)	854
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	652
BstX2I	RGATCY	2 cut(s)	948, 1051
BstYI	RGATCY	2 cut(s)	948, 1051
BstZ17I	GTATAC	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	407, 622
BtgI	CCRYGG	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	773
BtsCI	GGATG	3 cut(s)	450, 928, 1055
BtsIMutI	CAGTG	3 cut(s)	104, 792, 917
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	6 cut(s)	166, 262, 658, 670, 700, 990
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr13I	GGNCC	3 cut(s)	313, 448, 620
Csp6I	GTAC	3 cut(s)	13, 277, 851
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviAII	CATG	3 cut(s)	441, 811, 971
CviQI	GTAC	3 cut(s)	13, 277, 851
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	2 cut(s)	950, 1053
DpnII	GATC	2 cut(s)	948, 1051
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco105I	TACGTA	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	1075
Eco47I	GGWCC	2 cut(s)	313, 448
Eco57I	CTGAAG	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	1092
EcoRV	GATATC	1 cut(s)	1075
FaeI	CATG	3 cut(s)	444, 814, 974
FalI	AAGNNNNNCTT	4 cut(s)	451, 483, 1025, 1057
FaqI	GGGAC	2 cut(s)	3, 1031
FatI	CATG	3 cut(s)	440, 810, 970
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	3 cut(s)	457, 935, 1042
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	4 cut(s)	261, 347, 617, 1136
GluI	GCNGC	1 cut(s)	666
GsaI	CCCAGC	2 cut(s)	294, 506
HaeIII	GGCC	2 cut(s)	407, 622
Hin1II	CATG	3 cut(s)	444, 814, 974
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	321, 424
HphI	GGTGA	2 cut(s)	86, 205
Hpy166II	GTNNAC	5 cut(s)	104, 196, 313, 400, 903
Hpy188I	TCNGA	9 cut(s)	221, 286, 511, 804, 948, 1004, 1051, 1072, 1126
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	5 cut(s)	104, 196, 313, 400, 903
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	5 cut(s)	17, 31, 685, 900, 1102
HpyCH4IV	ACGT	6 cut(s)	198, 279, 296, 494, 772, 853
HpyCH4V	TGCA	5 cut(s)	554, 581, 737, 863, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 270, 662, 985
HpyF3I	CTNAG	1 cut(s)	160
HpySE526I	ACGT	6 cut(s)	198, 279, 296, 494, 772, 853
Hsp92II	CATG	3 cut(s)	444, 814, 974
Kzo9I	GATC	2 cut(s)	948, 1051
LmnI	GCTCC	2 cut(s)	221, 765
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	4 cut(s)	261, 347, 617, 1136
MaeII	ACGT	6 cut(s)	198, 279, 296, 494, 772, 853
MaeIII	GTNAC	4 cut(s)	31, 366, 593, 1096
MalI	GATC	2 cut(s)	950, 1053
MboI	GATC	2 cut(s)	948, 1051
MboII	GAAGA	6 cut(s)	227, 419, 471, 566, 740, 943
MflI	RGATCY	2 cut(s)	948, 1051
MluCI	AATT	8 cut(s)	75, 86, 150, 230, 326, 480, 606, 798
MmeI	TCCRAC	2 cut(s)	264, 926
MnlI	CCTC	8 cut(s)	169, 558, 584, 816, 818, 841, 998, 1007
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	5 cut(s)	140, 536, 605, 674, 1088
MspA1I	CMGCKG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	1094
MvaI	CCWGG	1 cut(s)	1094
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	221, 270, 662, 985
NdeII	GATC	2 cut(s)	948, 1051
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	444, 814, 974
NlaIV	GGNNCC	4 cut(s)	223, 253, 288, 315
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	31, 366
PaqCI	CACCTGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	321, 424
PflMI	CCANNNNNTGG	2 cut(s)	310, 1061
PkrI	GCNGC	1 cut(s)	667
Ppu21I	YACGTR	2 cut(s)	280, 854
Psp6I	CCWGG	1 cut(s)	1092
PspFI	CCCAGC	2 cut(s)	290, 502
PspGI	CCWGG	1 cut(s)	1092
PspN4I	GGNNCC	4 cut(s)	223, 253, 288, 315
PspPI	GGNCC	3 cut(s)	313, 448, 620
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	948, 1051
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	3 cut(s)	14, 278, 852
RsaNI	GTAC	3 cut(s)	13, 277, 851
SaqAI	TTAA	5 cut(s)	140, 536, 605, 674, 1088
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	2 cut(s)	948, 1051
Sau96I	GGNCC	3 cut(s)	313, 448, 620
ScrFI	CCNGG	1 cut(s)	1094
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	2 cut(s)	313, 448
SnaBI	TACGTA	1 cut(s)	854
Sse9I	AATT	8 cut(s)	75, 86, 150, 230, 326, 480, 606, 798
SsiI	CCGC	2 cut(s)	258, 748
SspMI	CTAG	4 cut(s)	261, 347, 617, 1136
StyD4I	CCNGG	1 cut(s)	1092
TaaI	ACNGT	5 cut(s)	17, 31, 685, 900, 1102
TaiI	ACGT	6 cut(s)	201, 282, 299, 497, 775, 856
TasI	AATT	8 cut(s)	75, 86, 150, 230, 326, 480, 606, 798
TfiI	GAWTC	2 cut(s)	321, 424
Tru1I	TTAA	5 cut(s)	140, 536, 605, 674, 1088
Tru9I	TTAA	5 cut(s)	140, 536, 605, 674, 1088
TscAI	CASTG	3 cut(s)	111, 792, 924
TseFI	GTSAC	2 cut(s)	31, 366
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	2 cut(s)	31, 366
TspDTI	ATGAA	5 cut(s)	17, 478, 626, 807, 817
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	3 cut(s)	111, 792, 924
Van91I	CCANNNNNTGG	2 cut(s)	310, 1061
VpaK11BI	GGWCC	2 cut(s)	313, 448
XapI	RAATTY	3 cut(s)	86, 230, 480
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 438
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	4 cut(s)	261, 347, 617, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.