Rh5BG312800

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002836
Physical Location & Seq
Forward (+)
41486933 .. 41509151
22219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG312800.1

Sequence Viewer

Length: 978 bp
ATGGGGTTTCATGGTCATTATCTTATTCAGGACGACATCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCTGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGAGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTTTGACTGTTTAAGTTTTGGTGATAGAATTTGGTTTGTGGGTTTTGGGTATTGTCGGTTTGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGTAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGTCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGGTATCAGTCTCTTTGCATCTGTTGCTGCAACTCTTGGACTAAAATATTGCTCGAGTCTGCTTGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

325

Amino Acids

35.66

Weight (kDa)

8.87

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 99 - 294 2.4e-07 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 6 cut(s) 57, 60, 80, 105, 156, 709
AclWI GGATC 2 cut(s) 114, 417
AcoI YGGCCR 2 cut(s) 169, 366
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 2 cut(s) 708, 774
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 711
AflIII ACRYGT 1 cut(s) 177
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 4 cut(s) 53, 113, 577, 626
AluI AGCT 4 cut(s) 53, 113, 577, 626
Alw26I GTCTC 3 cut(s) 388, 869, 920
AlwI GGATC 2 cut(s) 114, 417
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 958
AoxI GGCC 2 cut(s) 169, 366
ApeKI GCWGC 2 cut(s) 626, 932
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 759
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 1 cut(s) 263
AsuNHI GCTAGC 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 958
AvaII GGWCC 1 cut(s) 581
BalI TGGCCA 2 cut(s) 171, 368
BanI GGYRCC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 613, 919
BccI CCATC 3 cut(s) 400, 467, 878
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcoDI GTCTC 3 cut(s) 388, 869, 920
BfaI CTAG 4 cut(s) 159, 308, 458, 578
BfmI CTRYAG 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 3 cut(s) 60, 627, 933
BlsI GCNGC 3 cut(s) 61, 628, 934
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 958
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 2 cut(s) 151, 186
BmsI GCATC 2 cut(s) 551, 932
BmtI GCTAGC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BsaAI YACGTR 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 4 cut(s) 493, 523, 732, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 711
Bse1I ACTGG 3 cut(s) 172, 746, 857
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 711
BseMII CTCAG 1 cut(s) 148
BseNI ACTGG 3 cut(s) 172, 746, 857
BseRI GAGGAG 2 cut(s) 495, 498
BseXI GCAGC 2 cut(s) 613, 919
BseYI CCCAGC 1 cut(s) 463
BshFI GGCC 2 cut(s) 171, 368
BshNI GGYRCC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 958
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 711
BsmAI GTCTC 3 cut(s) 388, 869, 920
BsnI GGCC 2 cut(s) 171, 368
BsoBI CYCGRG 1 cut(s) 958
Bsp143I GATC 3 cut(s) 119, 141, 409
BspACI CCGC 6 cut(s) 57, 60, 80, 105, 156, 709
BspANI GGCC 2 cut(s) 171, 368
BspCNI CTCAG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 151, 186
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 2 cut(s) 114, 417
BspT107I GGYRCC 1 cut(s) 149
BsrI ACTGG 3 cut(s) 172, 746, 857
BssMI GATC 3 cut(s) 119, 141, 409
Bst4CI ACNGT 4 cut(s) 239, 591, 646, 861
Bst6I CTCTTC 1 cut(s) 415
BstAPI GCANNNNNTGC 1 cut(s) 929
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 6 cut(s) 64, 105, 160, 553, 619, 661
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 3 cut(s) 122, 144, 412
BstMAI GTCTC 3 cut(s) 388, 869, 920
BstMBI GATC 3 cut(s) 119, 141, 409
BstMWI GCNNNNNNNGC 7 cut(s) 59, 72, 168, 548, 623, 899, 929
BstNSI RCATGY 1 cut(s) 401
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 613, 919
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 2 cut(s) 171, 368
BtsCI GGATG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 753
Cac8I GCNNGC 6 cut(s) 64, 105, 160, 553, 619, 661
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 65, 100
CviAII CATG 3 cut(s) 11, 398, 772
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 121, 143, 411
DpnII GATC 3 cut(s) 119, 141, 409
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 169, 366
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 708, 774
Eco88I CYCGRG 1 cut(s) 958
FaeI CATG 3 cut(s) 14, 401, 775
FaiI YATR 9 cut(s) 12, 218, 335, 382, 399, 455, 562, 719, 773
FalI AAGNNNNNCTT 4 cut(s) 412, 444, 747, 779
FatI CATG 3 cut(s) 10, 397, 771
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 60, 627, 933
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 60, 627, 933
FspBI CTAG 4 cut(s) 159, 308, 458, 578
GlaI GCGC 1 cut(s) 478
GluI GCNGC 3 cut(s) 60, 627, 933
GsaI CCCAGC 1 cut(s) 467
HaeIII GGCC 2 cut(s) 171, 368
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 14, 401, 775
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 1 cut(s) 864
HindII GTYRAC 1 cut(s) 864
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 961
HpaI GTTAAC 1 cut(s) 864
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 361, 594, 864
Hpy188I TCNGA 4 cut(s) 44, 124, 137, 184
Hpy188III TCNNGA 3 cut(s) 29, 209, 438
Hpy8I GTNNAC 3 cut(s) 361, 594, 864
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 4 cut(s) 239, 591, 646, 861
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 7 cut(s) 515, 542, 698, 824, 902, 923, 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 72, 168, 548, 623, 899, 929
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 3 cut(s) 14, 401, 775
HspAI GCGC 1 cut(s) 477
KspAI GTTAAC 1 cut(s) 864
Kzo9I GATC 3 cut(s) 119, 141, 409
LmnI GCTCC 1 cut(s) 726
Lsp1109I GCAGC 2 cut(s) 613, 919
LweI GCATC 2 cut(s) 551, 932
MaeI CTAG 4 cut(s) 159, 308, 458, 578
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 3 cut(s) 190, 315, 327
MalI GATC 3 cut(s) 121, 143, 411
MboI GATC 3 cut(s) 119, 141, 409
MboII GAAGA 5 cut(s) 31, 191, 432, 527, 701
MfeI CAATTG 2 cut(s) 413, 879
MflI RGATCY 1 cut(s) 119
MlsI TGGCCA 2 cut(s) 171, 368
MluCI AATT 7 cut(s) 45, 224, 258, 413, 432, 567, 879
MluNI TGGCCA 2 cut(s) 171, 368
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 318, 516, 519, 777, 802, 904
Mox20I TGGCCA 2 cut(s) 171, 368
MroXI GAANNNNTTC 1 cut(s) 759
MscI TGGCCA 2 cut(s) 171, 368
MseI TTAA 6 cut(s) 242, 431, 566, 573, 635, 863
Msp20I TGGCCA 2 cut(s) 171, 368
MspA1I CMGCKG 2 cut(s) 82, 626
MspI CCGG 1 cut(s) 147
MunI CAATTG 2 cut(s) 413, 879
MwoI GCNNNNNNNGC 7 cut(s) 59, 72, 168, 548, 623, 899, 929
NdeII GATC 3 cut(s) 119, 141, 409
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 14, 401, 775
NlaIV GGNNCC 2 cut(s) 151, 186
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 190, 327
NspI RCATGY 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 759
PkrI GCNGC 3 cut(s) 61, 628, 934
PleI GAGTC 1 cut(s) 969
PpsI GAGTC 1 cut(s) 969
Ppu21I YACGTR 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 151, 186
PspPI GGNCC 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 958
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 6 cut(s) 242, 431, 566, 573, 635, 863
SatI GCNGC 3 cut(s) 60, 627, 933
Sau3AI GATC 3 cut(s) 119, 141, 409
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 970
SfaNI GCATC 2 cut(s) 551, 932
SfcI CTRYAG 1 cut(s) 612
Sfr274I CTCGAG 1 cut(s) 958
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 958
SmlI CTYRAG 2 cut(s) 958, 968
SmoI CTYRAG 2 cut(s) 958, 968
Sse9I AATT 7 cut(s) 45, 224, 258, 413, 432, 567, 879
SsiI CCGC 6 cut(s) 57, 60, 80, 105, 156, 709
SspI AATATT 1 cut(s) 953
SspMI CTAG 4 cut(s) 159, 308, 458, 578
TaaI ACNGT 4 cut(s) 239, 591, 646, 861
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 210, 959
TasI AATT 7 cut(s) 45, 224, 258, 413, 432, 567, 879
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 6 cut(s) 242, 431, 566, 573, 635, 863
Tru9I TTAA 6 cut(s) 242, 431, 566, 573, 635, 863
TscAI CASTG 1 cut(s) 753
TseFI GTSAC 2 cut(s) 190, 327
TseI GCWGC 2 cut(s) 626, 932
Tsp45I GTSAC 2 cut(s) 190, 327
TspDTI ATGAA 3 cut(s) 191, 439, 778
TspRI CASTG 1 cut(s) 753
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 1 cut(s) 258
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 958
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 4 cut(s) 159, 308, 458, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.