Rh2CG585000

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002836
Physical Location & Seq
Reverse (-)
76246099 .. 76248288
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG585000.1

Sequence Viewer

Length: 678 bp
ATGGCTTGTGTTTGGCCTTGTCGAATTGTAGGTCTATACCCTAATTTGCATATTAGAGTTGTCAACGGTGTCCTGCCTATTGGTGACTATTCCTTTGCTAAGAATAACAAGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGTTAGGGTTGGGTGCAGATGGCGCACCAGCCCTTGTTCAATTGAGAACTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTTATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGGTATCGGTCTCTTTGCATCTGTTGCTGCAACTCTTGGACTAAAATATAGCTCGAGTCTGCTTGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

225

Amino Acids

24.22

Weight (kDa)

9.0

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 90 - 194 6.5e-08 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 409
AclWI GGATC 1 cut(s) 120
AcuI CTGAAG 2 cut(s) 408, 474
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 3 cut(s) 277, 326, 657
AluI AGCT 3 cut(s) 277, 326, 657
Alw26I GTCTC 2 cut(s) 569, 620
AlwI GGATC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 658
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 326, 632
ArsI GACNNNNNNTTYG 4 cut(s) 16, 48, 77, 109
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 313, 619
BccI CCATC 2 cut(s) 170, 578
BcoDI GTCTC 2 cut(s) 569, 620
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 2 cut(s) 327, 633
BlsI GCNGC 2 cut(s) 328, 634
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 281
BmsI GCATC 2 cut(s) 251, 632
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BsaI GGTCTC 1 cut(s) 620
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 446, 557
BseLI CCNNNNNNNGG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 446, 557
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 313, 619
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 658
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 2 cut(s) 569, 620
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 658
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 620
BsrI ACTGG 2 cut(s) 446, 557
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 4 cut(s) 68, 291, 346, 561
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 253, 319, 361
BstDEI CTNAG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 569, 620
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 5 cut(s) 179, 248, 323, 599, 629
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 313, 619
BsuRI GGCC 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 253, 319, 361
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 1 cut(s) 472
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 408, 474
Eco88I CYCGRG 1 cut(s) 658
FaeI CATG 1 cut(s) 475
FaiI YATR 7 cut(s) 37, 51, 158, 262, 419, 473, 654
FalI AAGNNNNNCTT 4 cut(s) 115, 147, 447, 479
FatI CATG 1 cut(s) 471
Fnu4HI GCNGC 2 cut(s) 327, 633
Fsp4HI GCNGC 2 cut(s) 327, 633
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 327, 633
HaeIII GGCC 1 cut(s) 16
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 64, 564
HindII GTYRAC 2 cut(s) 64, 564
HinfI GANTC 1 cut(s) 661
HpaI GTTAAC 1 cut(s) 564
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 64, 294, 564
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 3 cut(s) 64, 294, 564
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 4 cut(s) 68, 291, 346, 561
HpyCH4V TGCA 9 cut(s) 49, 173, 215, 242, 398, 524, 602, 623, 635
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 248, 323, 599, 629
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 426
Lsp1109I GCAGC 2 cut(s) 313, 619
LweI GCATC 2 cut(s) 251, 632
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 135, 227, 401
MfeI CAATTG 3 cut(s) 116, 197, 579
MluCI AATT 7 cut(s) 24, 43, 116, 135, 197, 267, 579
MlyI GAGTC 1 cut(s) 670
MnlI CCTC 4 cut(s) 219, 477, 502, 604
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 5 cut(s) 134, 266, 273, 335, 563
MspA1I CMGCKG 1 cut(s) 326
MunI CAATTG 3 cut(s) 116, 197, 579
MwoI GCNNNNNNNGC 5 cut(s) 179, 248, 323, 599, 629
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 459
PkrI GCNGC 2 cut(s) 328, 634
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
PspPI GGNCC 1 cut(s) 281
PspXI VCTCGAGB 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 326
SaqAI TTAA 5 cut(s) 134, 266, 273, 335, 563
SatI GCNGC 2 cut(s) 327, 633
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 670
SetI ASST 7 cut(s) 34, 279, 328, 341, 488, 513, 659
SfaNI GCATC 2 cut(s) 251, 632
SfcI CTRYAG 1 cut(s) 312
Sfr274I CTCGAG 1 cut(s) 658
SinI GGWCC 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 658
SmlI CTYRAG 2 cut(s) 658, 668
SmoI CTYRAG 2 cut(s) 658, 668
Sse9I AATT 7 cut(s) 24, 43, 116, 135, 197, 267, 579
SsiI CCGC 1 cut(s) 409
SspMI CTAG 1 cut(s) 278
TaaI ACNGT 4 cut(s) 68, 291, 346, 561
TaqI TCGA 2 cut(s) 22, 659
TaqII GACCGA 1 cut(s) 602
TasI AATT 7 cut(s) 24, 43, 116, 135, 197, 267, 579
Tru1I TTAA 5 cut(s) 134, 266, 273, 335, 563
Tru9I TTAA 5 cut(s) 134, 266, 273, 335, 563
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 326, 632
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 142, 478
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.