Rw5G019640

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002836
Physical Location & Seq
Forward (+)
25584240 .. 25587027
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G019640.1

Sequence Viewer

Length: 1221 bp
ATGAACATTGTTCTTGTTCCCGCTCCCTCCATCTGCTATTTCCCGCTCCCTCCATCCAGTCCCGACAACGAAGTCAACCATAGCAATCTGCGAAGTCGACATCTGCTAGTTCAGCTCCACCTCCTTCCTATTTTTCTTCTTCCTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCTACAACAACAACAACAAAACTCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCAAACAACCACAACCCCTGAAGAACTTGCATTTCCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTTGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGTATGGGAAGATTTCATTGTTCATTTTTTTTTCCTACTAGTTCTCTTCTTCTCAATTTTAGCAATAAAAATCAAATCTGATGCTTTCTCTTCTTGTTTTCGGATTTCAACAAGCAAATTCTGGCATATATCAAATGTCATTTTAGCTCCCCAGTCTGACACCGTATTTCATGAACTATACCTTGTGGTCCTTCTCTGTTTAACTATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

406

Amino Acids

44.85

Weight (kDa)

9.17

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 128 - 307 9.9e-09 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 407
AccB1I GGYRCC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 304
AccBSI CCGCTC 2 cut(s) 23, 46
AccI GTMKAC 1 cut(s) 97
AciI CCGC 8 cut(s) 21, 44, 246, 249, 269, 294, 345, 811
AclWI GGATC 3 cut(s) 303, 316, 519
AcoI YGGCCR 2 cut(s) 358, 492
AcsI RAATTY 1 cut(s) 1124
AcuI CTGAAG 2 cut(s) 810, 876
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 304, 813
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 1 cut(s) 1116
AhlI ACTAGT 1 cut(s) 1045
AloI GAACNNNNNNTCC 2 cut(s) 595, 627
AluBI AGCT 7 cut(s) 115, 228, 242, 302, 679, 728, 1154
AluI AGCT 7 cut(s) 115, 228, 242, 302, 679, 728, 1154
Alw26I GTCTC 1 cut(s) 971
AlwI GGATC 3 cut(s) 303, 316, 519
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 2 cut(s) 358, 492
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 1 cut(s) 1124
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 683, 1195
AsuNHI GCTAGC 1 cut(s) 347
AvaII GGWCC 2 cut(s) 683, 1195
BalI TGGCCA 2 cut(s) 360, 494
BamHI GGATCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 715
BccI CCATC 4 cut(s) 38, 61, 569, 980
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BcoDI GTCTC 1 cut(s) 971
BcuI ACTAGT 1 cut(s) 1045
BfaI CTAG 6 cut(s) 107, 348, 434, 560, 680, 1046
BfmI CTRYAG 1 cut(s) 714
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 2 cut(s) 249, 729
BlsI GCNGC 2 cut(s) 250, 730
Bme18I GGWCC 2 cut(s) 683, 1195
BmgT120I GGNCC 2 cut(s) 683, 1195
BmiI GGNNCC 3 cut(s) 310, 340, 375
BmrI ACTGGG 1 cut(s) 1153
BmsI GCATC 2 cut(s) 653, 1078
BmtI GCTAGC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 1153
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BsaAI YACGTR 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 4 cut(s) 595, 625, 834, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 813
Bse1I ACTGG 5 cut(s) 57, 361, 848, 959, 1159
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 2 cut(s) 304, 813
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 5 cut(s) 57, 361, 848, 959, 1159
BseRI GAGGAG 2 cut(s) 597, 600
BseXI GCAGC 1 cut(s) 715
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 2 cut(s) 360, 494
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 304, 813
BsmAI GTCTC 1 cut(s) 971
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 360, 494
Bsp143I GATC 3 cut(s) 308, 330, 511
BspACI CCGC 8 cut(s) 21, 44, 246, 249, 269, 294, 345, 811
BspANI GGCC 2 cut(s) 360, 494
BspCNI CTCAG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 3 cut(s) 310, 340, 375
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 3 cut(s) 303, 316, 519
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 2 cut(s) 23, 46
BsrI ACTGG 5 cut(s) 57, 361, 848, 959, 1159
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 308, 330, 511
Bst4CI ACNGT 4 cut(s) 693, 748, 963, 1171
Bst6I CTCTTC 3 cut(s) 517, 1058, 1102
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 6 cut(s) 253, 294, 349, 655, 721, 763
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 3 cut(s) 311, 333, 514
BstMAI GTCTC 1 cut(s) 971
BstMBI GATC 3 cut(s) 308, 330, 511
BstMWI GCNNNNNNNGC 8 cut(s) 112, 248, 261, 357, 578, 650, 725, 1001
BstSFI CTRYAG 1 cut(s) 714
BstV1I GCAGC 1 cut(s) 715
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 2 cut(s) 360, 494
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 6 cut(s) 253, 294, 349, 655, 721, 763
CaiI CAGNNNCTG 1 cut(s) 854
CciI TCATGA 1 cut(s) 1177
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 2 cut(s) 683, 1195
Csp6I GTAC 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 2 cut(s) 874, 1178
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 1 cut(s) 323
DpnI GATC 3 cut(s) 310, 332, 513
DpnII GATC 3 cut(s) 308, 330, 511
DrdI GACNNNNNNGTC 2 cut(s) 71, 407
DseDI GACNNNNNNGTC 2 cut(s) 71, 407
EaeI YGGCCR 2 cut(s) 358, 492
Eam1104I CTCTTC 3 cut(s) 517, 1058, 1102
EarI CTCTTC 3 cut(s) 517, 1058, 1102
EciI GGCGGA 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 683, 1195
Eco57I CTGAAG 2 cut(s) 810, 876
FaeI CATG 2 cut(s) 877, 1181
FalI AAGNNNNNCTT 4 cut(s) 514, 546, 849, 881
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 873, 1177
FauI CCCGC 3 cut(s) 28, 51, 301
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 249, 729
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 249, 729
FspBI CTAG 6 cut(s) 107, 348, 434, 560, 680, 1046
GlaI GCGC 1 cut(s) 580
GluI GCNGC 2 cut(s) 249, 729
GsaI CCCAGC 1 cut(s) 569
HaeIII GGCC 2 cut(s) 360, 494
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 581
Hin1II CATG 2 cut(s) 877, 1181
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HincII GTYRAC 3 cut(s) 76, 98, 966
HindII GTYRAC 3 cut(s) 76, 98, 966
HindIII AAGCTT 2 cut(s) 226, 300
HpaI GTTAAC 1 cut(s) 966
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 6 cut(s) 76, 98, 214, 487, 696, 966
Hpy188I TCNGA 7 cut(s) 233, 313, 326, 373, 1087, 1110, 1165
Hpy188III TCNNGA 4 cut(s) 62, 398, 540, 1178
Hpy8I GTNNAC 6 cut(s) 76, 98, 214, 487, 696, 966
HpyAV CCTTC 4 cut(s) 134, 179, 697, 1208
HpyCH4III ACNGT 4 cut(s) 693, 748, 963, 1171
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 6 cut(s) 572, 617, 644, 800, 926, 1004
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 248, 261, 357, 578, 650, 725, 1001
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 2 cut(s) 877, 1181
HspAI GCGC 1 cut(s) 579
KspAI GTTAAC 1 cut(s) 966
Kzo9I GATC 3 cut(s) 308, 330, 511
LmnI GCTCC 5 cut(s) 28, 51, 120, 828, 1159
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 2 cut(s) 653, 1078
MaeI CTAG 6 cut(s) 107, 348, 434, 560, 680, 1046
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 379, 441, 453
MalI GATC 3 cut(s) 310, 332, 513
MbiI CCGCTC 2 cut(s) 23, 46
MboI GATC 3 cut(s) 308, 330, 511
MfeI CAATTG 2 cut(s) 515, 981
MflI RGATCY 1 cut(s) 308
MlsI TGGCCA 2 cut(s) 360, 494
MluCI AATT 8 cut(s) 234, 413, 515, 534, 669, 981, 1062, 1124
MluNI TGGCCA 2 cut(s) 360, 494
MmeI TCCRAC 1 cut(s) 351
Mox20I TGGCCA 2 cut(s) 360, 494
MroXI GAANNNNTTC 1 cut(s) 861
MscI TGGCCA 2 cut(s) 360, 494
MseI TTAA 6 cut(s) 533, 668, 675, 737, 965, 1208
MslI CAYNNNNRTG 1 cut(s) 1009
Msp20I TGGCCA 2 cut(s) 360, 494
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 336
MunI CAATTG 2 cut(s) 515, 981
MwoI GCNNNNNNNGC 8 cut(s) 112, 248, 261, 357, 578, 650, 725, 1001
NdeII GATC 3 cut(s) 308, 330, 511
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 2 cut(s) 877, 1181
NlaIV GGNNCC 3 cut(s) 310, 340, 375
NmuCI GTSAC 2 cut(s) 379, 453
PagI TCATGA 1 cut(s) 1177
PdmI GAANNNNTTC 1 cut(s) 861
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 2 cut(s) 250, 730
Ppu21I YACGTR 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 310, 340, 375
PspPI GGNCC 2 cut(s) 683, 1195
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 1009
SalI GTCGAC 1 cut(s) 96
SaqAI TTAA 6 cut(s) 533, 668, 675, 737, 965, 1208
SatI GCNGC 2 cut(s) 249, 729
Sau3AI GATC 3 cut(s) 308, 330, 511
Sau96I GGNCC 2 cut(s) 683, 1195
SfaNI GCATC 2 cut(s) 653, 1078
SfcI CTRYAG 1 cut(s) 714
SinI GGWCC 2 cut(s) 683, 1195
SmiMI CAYNNNNRTG 1 cut(s) 1009
SpeI ACTAGT 1 cut(s) 1045
Sse9I AATT 8 cut(s) 234, 413, 515, 534, 669, 981, 1062, 1124
SsiI CCGC 8 cut(s) 21, 44, 246, 249, 269, 294, 345, 811
SspMI CTAG 6 cut(s) 107, 348, 434, 560, 680, 1046
TaaI ACNGT 4 cut(s) 693, 748, 963, 1171
TaiI ACGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 97, 399
TasI AATT 8 cut(s) 234, 413, 515, 534, 669, 981, 1062, 1124
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 6 cut(s) 533, 668, 675, 737, 965, 1208
Tru9I TTAA 6 cut(s) 533, 668, 675, 737, 965, 1208
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 2 cut(s) 379, 453
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 379, 453
TspDTI ATGAA 9 cut(s) 17, 165, 380, 541, 880, 1012, 1019, 1166, 1194
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 683, 1195
XapI RAATTY 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 6 cut(s) 107, 348, 434, 560, 680, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.