Rh2CG432800

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002836
Physical Location & Seq
Forward (+)
58836428 .. 58846456
10029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG432800.1

Sequence Viewer

Length: 666 bp
ATGAATTGGCGATTGCAATCTGCAGTTGGCACTGTAGAAACAAAGAGTTTGTATACATCAGTAGCTCCTTCCTCAAGAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCTCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCTCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCATAGTCAAATTGGTTTGGCTTTTGGCTCTATTTGTGTTACTAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCATGGATGGTTTTCCAAAGTGCGAGCCTTTGCCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

221

Amino Acids

24.58

Weight (kDa)

9.79

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 139 - 211 2.7e-06 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 169
AccI GTMKAC 1 cut(s) 53
AciI CCGC 4 cut(s) 111, 134, 210, 463
AclWI GGATC 2 cut(s) 168, 181
AcoI YGGCCR 2 cut(s) 223, 357
AcuI CTGAAG 2 cut(s) 462, 528
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 169, 465
AflIII ACRYGT 1 cut(s) 231
AluBI AGCT 4 cut(s) 65, 93, 107, 167
AluI AGCT 4 cut(s) 65, 93, 107, 167
Alw26I GTCTC 2 cut(s) 379, 623
AlwI GGATC 2 cut(s) 168, 181
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 2 cut(s) 223, 357
Asp700I GAANNNNTTC 1 cut(s) 513
AsuNHI GCTAGC 1 cut(s) 212
BalI TGGCCA 2 cut(s) 225, 359
BamHI GGATCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 203
BccI CCATC 2 cut(s) 391, 632
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcoDI GTCTC 2 cut(s) 379, 623
BfaI CTAG 2 cut(s) 213, 311
BfmI CTRYAG 2 cut(s) 21, 33
BglI GCCNNNNNGGC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 175, 205, 240
BmtI GCTAGC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 465
Bse1I ACTGG 3 cut(s) 226, 500, 611
Bse8I GATNNNNATC 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 402
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 2 cut(s) 169, 465
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 3 cut(s) 226, 500, 611
BshFI GGCC 2 cut(s) 225, 359
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 169, 465
BsmAI GTCTC 2 cut(s) 379, 623
BsnI GGCC 2 cut(s) 225, 359
Bsp143I GATC 2 cut(s) 173, 195
BspACI CCGC 4 cut(s) 111, 134, 210, 463
BspANI GGCC 2 cut(s) 225, 359
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 175, 205, 240
BspMAI CTGCAG 1 cut(s) 25
BspOI GCTAGC 1 cut(s) 216
BspPI GGATC 2 cut(s) 168, 181
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 3 cut(s) 226, 500, 611
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 2 cut(s) 173, 195
BssNAI GTATAC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 34, 615
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 159, 214, 415
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 2 cut(s) 176, 198
BstMAI GTCTC 2 cut(s) 379, 623
BstMBI GATC 2 cut(s) 173, 195
BstMWI GCNNNNNNNGC 3 cut(s) 126, 222, 653
BstNSI RCATGY 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 21, 33
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BstZ17I GTATAC 1 cut(s) 54
BsuRI GGCC 2 cut(s) 225, 359
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 30, 507
Cac8I GCNNGC 3 cut(s) 159, 214, 415
CaiI CAGNNNCTG 1 cut(s) 506
Csp6I GTAC 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 3 cut(s) 389, 393, 526
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 188
DpnI GATC 2 cut(s) 175, 197
DpnII GATC 2 cut(s) 173, 195
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 223, 357
EciI GGCGGA 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 462, 528
EcoT22I ATGCAT 1 cut(s) 394
FaeI CATG 3 cut(s) 392, 396, 529
FaiI YATR 9 cut(s) 54, 272, 326, 373, 390, 394, 473, 527, 664
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 388, 392, 525
FblI GTMKAC 1 cut(s) 53
FokI GGATG 1 cut(s) 409
FspBI CTAG 2 cut(s) 213, 311
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 2 cut(s) 225, 359
HapII CCGG 1 cut(s) 201
Hin1II CATG 3 cut(s) 392, 396, 529
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 2 cut(s) 91, 165
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 3 cut(s) 54, 352, 618
Hpy188I TCNGA 4 cut(s) 98, 178, 191, 238
Hpy188III TCNNGA 2 cut(s) 75, 263
Hpy8I GTNNAC 3 cut(s) 54, 352, 618
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 34, 615
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 6 cut(s) 16, 23, 392, 452, 578, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 222, 653
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 392, 396, 529
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 2 cut(s) 173, 195
LmnI GCTCC 2 cut(s) 70, 480
LpnPI CCDG 7 cut(s) 130, 164, 214, 239, 453, 513, 592
MaeI CTAG 2 cut(s) 213, 311
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 244, 306, 318
MalI GATC 2 cut(s) 175, 197
MboI GATC 2 cut(s) 173, 195
MboII GAAGA 2 cut(s) 245, 455
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 173
MlsI TGGCCA 2 cut(s) 225, 359
MluCI AATT 4 cut(s) 4, 99, 278, 633
MluNI TGGCCA 2 cut(s) 225, 359
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 82, 124, 309, 531, 556, 658
Mox20I TGGCCA 2 cut(s) 225, 359
Mph1103I ATGCAT 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 2 cut(s) 225, 359
MseI TTAA 1 cut(s) 617
MslI CAYNNNNRTG 1 cut(s) 661
Msp20I TGGCCA 2 cut(s) 225, 359
MspI CCGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 633
MwoI GCNNNNNNNGC 3 cut(s) 126, 222, 653
NdeII GATC 2 cut(s) 173, 195
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 3 cut(s) 392, 396, 529
NlaIV GGNNCC 3 cut(s) 175, 205, 240
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 244, 318
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 175, 205, 240
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 661
SaqAI TTAA 1 cut(s) 617
Sau3AI GATC 2 cut(s) 173, 195
SetI ASST 9 cut(s) 67, 95, 109, 153, 169, 234, 320, 542, 567
SfcI CTRYAG 2 cut(s) 21, 33
SmiMI CAYNNNNRTG 1 cut(s) 661
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 4 cut(s) 4, 99, 278, 633
SsiI CCGC 4 cut(s) 111, 134, 210, 463
SspMI CTAG 2 cut(s) 213, 311
TaaI ACNGT 2 cut(s) 34, 615
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 264
TasI AATT 4 cut(s) 4, 99, 278, 633
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TscAI CASTG 2 cut(s) 37, 507
TseFI GTSAC 2 cut(s) 244, 318
Tsp45I GTSAC 2 cut(s) 244, 318
TspDTI ATGAA 3 cut(s) 17, 245, 532
TspRI CASTG 2 cut(s) 37, 507
Van91I CCANNNNNTGG 1 cut(s) 169
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 213, 311
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.