Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000831.1

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Reverse (-)

134542 .. 136603

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000831.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgaaggtttggcttttggctctagttgtgttaccagcgaggtcacacataatacttcgttttggattagttgtttacttggccattttgtcaatatgggttctgccgagacatgcgtggatggatcaattgggaagagtgtctttaatttctggacttttgttcattatgctagggctgggtgcagatggcgcaccagcccttgttcagttgagaactcctcctcctgcaatcacaggattatcaaatcttcctgcatctctggcaggctactcatatttaatttttaagctaggaccaatacagtttacaaggaagggcttgtctgtagcaagcacagctgcttgtttaacctttacgagccctagttccgacttgggcaaccctcaacttgacttccagacctaccctaactacatggatgatctctacaataccatggatgatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

150

Amino Acids

16.4

Weight (kDa)

7.89

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	81
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	2 cut(s)	292, 341
AluI	AGCT	2 cut(s)	292, 341
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	115, 182
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	4 cut(s)	23, 173, 293, 366
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmsI	GCATC	1 cut(s)	266
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
BsaJI	CCNNGG	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	126, 427, 448
BseRI	GAGGAG	2 cut(s)	210, 213
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	124, 424
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	2 cut(s)	124, 424
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	268, 334
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	126, 427, 448
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	2 cut(s)	127, 427
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	124, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 263, 338
BstNSI	RCATGY	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	126, 427, 448
Cac8I	GCNNGC	2 cut(s)	268, 334
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	296
CviAII	CATG	3 cut(s)	113, 418, 439
DpnI	GATC	2 cut(s)	126, 426
DpnII	GATC	2 cut(s)	124, 424
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	3 cut(s)	116, 421, 442
FaiI	YATR	7 cut(s)	50, 97, 114, 170, 277, 419, 440
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	3 cut(s)	112, 417, 438
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	133, 434
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	4 cut(s)	23, 173, 293, 366
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	116, 421, 442
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
Hpy166II	GTNNAC	2 cut(s)	76, 309
Hpy188I	TCNGA	2 cut(s)	373, 452
Hpy188III	TCNNGA	2 cut(s)	153, 400
Hpy8I	GTNNAC	2 cut(s)	76, 309
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	185, 230, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 263, 338
Hsp92II	CATG	3 cut(s)	116, 421, 442
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	124, 424
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	4 cut(s)	23, 173, 293, 366
MaeIII	GTNAC	2 cut(s)	30, 42
MalI	GATC	2 cut(s)	126, 426
MboI	GATC	2 cut(s)	124, 424
MboII	GAAGA	2 cut(s)	147, 242
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	128, 147, 282
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	4 cut(s)	33, 231, 234, 396
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	146, 281, 288, 350
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	191, 263, 338
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	124, 424
NlaIII	CATG	3 cut(s)	116, 421, 442
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	146, 281, 288, 350
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	124, 424
Sau96I	GGNCC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	6 cut(s)	9, 44, 294, 343, 356, 407
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	128, 147, 282
SspMI	CTAG	4 cut(s)	23, 173, 293, 366
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	306
TasI	AATT	3 cut(s)	128, 147, 282
Tru1I	TTAA	4 cut(s)	146, 281, 288, 350
Tru9I	TTAA	4 cut(s)	146, 281, 288, 350
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	17, 154
VpaK11BI	GGWCC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	4 cut(s)	23, 173, 293, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.