zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21810 AT3G21810 |
| fragaria_vesca | FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 |
| malus_domestica | MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1 |
| prunus_persica | Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1 |
| pyrus_communis | pycom05g17840 pycom09g02830 |
| rosa_chinensis | RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061 |
| rosa_laevigata | RLG00000021194 |
| rosa_multiflora | Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00090060 Rroxscaffold_4G00309610 |
| rosa_rugosa | Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300 |
| rosa_samantha | Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200 |
| rosa_wichuraiana | Rw2G012000 Rw2G045200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 142, 175 |
| AccB1I | GGYRCC | 1 cut(s) | 1088 |
| AccBSI | CCGCTC | 1 cut(s) | 229 |
| AccI | GTMKAC | 3 cut(s) | 211, 540, 1118 |
| AciI | CCGC | 2 cut(s) | 229, 658 |
| AclWI | GGATC | 4 cut(s) | 553, 566, 812, 882 |
| AcsI | RAATTY | 3 cut(s) | 629, 799, 1139 |
| AcuI | CTGAAG | 2 cut(s) | 680, 1017 |
| AcyI | GRCGYC | 3 cut(s) | 139, 172, 512 |
| AfaI | GTAC | 3 cut(s) | 79, 264, 721 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 522 |
| AflII | CTTAAG | 2 cut(s) | 160, 193 |
| AgsI | TTSAA | 7 cut(s) | 46, 373, 392, 521, 618, 902, 984 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 792 |
| AjiI | CACGTC | 1 cut(s) | 353 |
| AjnI | CCWGG | 4 cut(s) | 112, 561, 762, 854 |
| AluBI | AGCT | 6 cut(s) | 31, 103, 568, 621, 1097, 1133 |
| AluI | AGCT | 6 cut(s) | 31, 103, 568, 621, 1097, 1133 |
| Alw26I | GTCTC | 5 cut(s) | 226, 566, 779, 949, 1242 |
| AlwI | GGATC | 4 cut(s) | 553, 566, 812, 882 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1160 |
| Ama87I | CYCGRG | 1 cut(s) | 1134 |
| AoxI | GGCC | 2 cut(s) | 68, 760 |
| ApeKI | GCWGC | 2 cut(s) | 1130, 1181 |
| ApoI | RAATTY | 3 cut(s) | 629, 799, 1139 |
| AspS9I | GGNCC | 1 cut(s) | 1041 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 935, 1280 |
| AvaI | CYCGRG | 1 cut(s) | 1134 |
| AvaII | GGWCC | 1 cut(s) | 1041 |
| BaeGI | GKGCMC | 1 cut(s) | 664 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 254, 287 |
| BamHI | GGATCC | 1 cut(s) | 558 |
| BanI | GGYRCC | 1 cut(s) | 1088 |
| BbsI | GAAGAC | 6 cut(s) | 142, 262, 399, 686, 1032, 1062 |
| BbvCI | CCTCAGC | 1 cut(s) | 1093 |
| BbvI | GCAGC | 2 cut(s) | 1142, 1193 |
| BccI | CCATC | 4 cut(s) | 401, 463, 899, 1270 |
| BceAI | ACGGC | 1 cut(s) | 1204 |
| BciT130I | CCWGG | 4 cut(s) | 114, 563, 764, 856 |
| BcoDI | GTCTC | 5 cut(s) | 226, 566, 779, 949, 1242 |
| BfaI | CTAG | 1 cut(s) | 555 |
| BfmI | CTRYAG | 1 cut(s) | 322 |
| BfrI | CTTAAG | 2 cut(s) | 160, 193 |
| BisI | GCNGC | 2 cut(s) | 1131, 1182 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 2 cut(s) | 1132, 1183 |
| Bme1390I | CCNGG | 4 cut(s) | 114, 563, 764, 856 |
| Bme18I | GGWCC | 1 cut(s) | 1041 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 792 |
| BmeT110I | CYCGRG | 1 cut(s) | 1134 |
| BmgBI | CACGTC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 1 cut(s) | 1041 |
| BmiI | GGNNCC | 2 cut(s) | 560, 1090 |
| BmrFI | CCNGG | 4 cut(s) | 114, 563, 764, 856 |
| BmrI | ACTGGG | 1 cut(s) | 571 |
| BmsI | GCATC | 2 cut(s) | 471, 1222 |
| BmuI | ACTGGG | 1 cut(s) | 571 |
| BpiI | GAAGAC | 6 cut(s) | 142, 262, 399, 686, 1032, 1062 |
| BpmI | CTGGAG | 1 cut(s) | 207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1093 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| BsaAI | YACGTR | 1 cut(s) | 723 |
| BsaHI | GRCGYC | 3 cut(s) | 139, 172, 512 |
| BsaI | GGTCTC | 3 cut(s) | 226, 566, 949 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 522 |
| Bse1I | ACTGG | 2 cut(s) | 58, 577 |
| BseBI | CCWGG | 4 cut(s) | 114, 563, 764, 856 |
| BseGI | GGATG | 3 cut(s) | 478, 760, 1261 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 522 |
| BseMII | CTCAG | 3 cut(s) | 90, 1107, 1152 |
| BseNI | ACTGG | 2 cut(s) | 58, 577 |
| BseRI | GAGGAG | 1 cut(s) | 1185 |
| BseSI | GKGCMC | 1 cut(s) | 664 |
| BseXI | GCAGC | 2 cut(s) | 1142, 1193 |
| BshFI | GGCC | 2 cut(s) | 70, 762 |
| BshNI | GGYRCC | 1 cut(s) | 1088 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1134 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 522 |
| BsmAI | GTCTC | 5 cut(s) | 226, 566, 779, 949, 1242 |
| BsmBI | CGTCTC | 1 cut(s) | 1242 |
| BsnI | GGCC | 2 cut(s) | 70, 762 |
| Bso31I | GGTCTC | 3 cut(s) | 226, 566, 949 |
| BsoBI | CYCGRG | 1 cut(s) | 1134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 664 |
| Bsp143I | GATC | 4 cut(s) | 558, 670, 817, 874 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| BspACI | CCGC | 2 cut(s) | 229, 658 |
| BspANI | GGCC | 2 cut(s) | 70, 762 |
| BspCNI | CTCAG | 3 cut(s) | 91, 1106, 1153 |
| BspLI | GGNNCC | 2 cut(s) | 560, 1090 |
| BspPI | GGATC | 4 cut(s) | 553, 566, 812, 882 |
| BspQI | GCTCTTC | 1 cut(s) | 441 |
| BspT107I | GGYRCC | 1 cut(s) | 1088 |
| BspTI | CTTAAG | 2 cut(s) | 160, 193 |
| BspTNI | GGTCTC | 3 cut(s) | 226, 566, 949 |
| BsrBI | CCGCTC | 1 cut(s) | 229 |
| BsrI | ACTGG | 2 cut(s) | 58, 577 |
| BssMI | GATC | 4 cut(s) | 558, 670, 817, 874 |
| BssNI | GRCGYC | 3 cut(s) | 139, 172, 512 |
| Bst2UI | CCWGG | 4 cut(s) | 114, 563, 764, 856 |
| Bst4CI | ACNGT | 5 cut(s) | 216, 335, 650, 852, 1268 |
| Bst6I | CTCTTC | 7 cut(s) | 304, 441, 777, 924, 947, 1161, 1212 |
| BstACI | GRCGYC | 3 cut(s) | 139, 172, 512 |
| BstAFI | CTTAAG | 2 cut(s) | 160, 193 |
| BstBAI | YACGTR | 1 cut(s) | 723 |
| BstC8I | GCNNGC | 1 cut(s) | 660 |
| BstDEI | CTNAG | 5 cut(s) | 99, 241, 716, 1093, 1161 |
| BstF5I | GGATG | 3 cut(s) | 478, 760, 1261 |
| BstKTI | GATC | 4 cut(s) | 561, 673, 820, 877 |
| BstMAI | GTCTC | 5 cut(s) | 226, 566, 779, 949, 1242 |
| BstMBI | GATC | 4 cut(s) | 558, 670, 817, 874 |
| BstNI | CCWGG | 4 cut(s) | 114, 563, 764, 856 |
| BstSCI | CCNGG | 4 cut(s) | 112, 561, 762, 854 |
| BstSFI | CTRYAG | 1 cut(s) | 322 |
| BstSLI | GKGCMC | 1 cut(s) | 664 |
| BstSNI | TACGTA | 1 cut(s) | 723 |
| BstV1I | GCAGC | 2 cut(s) | 1142, 1193 |
| BstV2I | GAAGAC | 6 cut(s) | 142, 262, 399, 686, 1032, 1062 |
| BstX2I | RGATCY | 1 cut(s) | 558 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 966 |
| BstYI | RGATCY | 1 cut(s) | 558 |
| BsuRI | GGCC | 2 cut(s) | 70, 762 |
| BtgZI | GCGATG | 1 cut(s) | 792 |
| BtrI | CACGTC | 1 cut(s) | 353 |
| BtsCI | GGATG | 3 cut(s) | 478, 760, 1261 |
| BtsIMutI | CAGTG | 1 cut(s) | 848 |
| Cac8I | GCNNGC | 1 cut(s) | 660 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1160 |
| Cfr13I | GGNCC | 1 cut(s) | 1041 |
| CseI | GACGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 3 cut(s) | 78, 263, 720 |
| CviAII | CATG | 5 cut(s) | 89, 281, 425, 533, 1238 |
| CviQI | GTAC | 3 cut(s) | 78, 263, 720 |
| DdeI | CTNAG | 5 cut(s) | 99, 241, 716, 1093, 1161 |
| DpnI | GATC | 4 cut(s) | 560, 672, 819, 876 |
| DpnII | GATC | 4 cut(s) | 558, 670, 817, 874 |
| DriI | GACNNNNNGTC | 1 cut(s) | 792 |
| Eam1104I | CTCTTC | 7 cut(s) | 304, 441, 777, 924, 947, 1161, 1212 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 792 |
| EarI | CTCTTC | 7 cut(s) | 304, 441, 777, 924, 947, 1161, 1212 |
| Eco105I | TACGTA | 1 cut(s) | 723 |
| Eco147I | AGGCCT | 1 cut(s) | 762 |
| Eco31I | GGTCTC | 3 cut(s) | 226, 566, 949 |
| Eco47I | GGWCC | 1 cut(s) | 1041 |
| Eco57I | CTGAAG | 2 cut(s) | 680, 1017 |
| Eco88I | CYCGRG | 1 cut(s) | 1134 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1041 |
| EcoRII | CCWGG | 4 cut(s) | 112, 561, 762, 854 |
| Esp3I | CGTCTC | 1 cut(s) | 1242 |
| FaeI | CATG | 5 cut(s) | 92, 284, 428, 536, 1241 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 678, 710 |
| FatI | CATG | 5 cut(s) | 88, 280, 424, 532, 1237 |
| FauI | CCCGC | 1 cut(s) | 651 |
| FblI | GTMKAC | 3 cut(s) | 211, 540, 1118 |
| Fnu4HI | GCNGC | 2 cut(s) | 1131, 1182 |
| FokI | GGATG | 3 cut(s) | 485, 767, 1268 |
| Fsp4HI | GCNGC | 2 cut(s) | 1131, 1182 |
| FspBI | CTAG | 1 cut(s) | 555 |
| GluI | GCNGC | 2 cut(s) | 1131, 1182 |
| GsuI | CTGGAG | 1 cut(s) | 207 |
| HaeIII | GGCC | 2 cut(s) | 70, 762 |
| HgaI | GACGC | 1 cut(s) | 501 |
| Hin1I | GRCGYC | 3 cut(s) | 139, 172, 512 |
| Hin1II | CATG | 5 cut(s) | 92, 284, 428, 536, 1241 |
| HindIII | AAGCTT | 1 cut(s) | 29 |
| HinfI | GANTC | 5 cut(s) | 119, 304, 1157, 1171, 1304 |
| HphI | GGTGA | 3 cut(s) | 68, 935, 1280 |
| Hpy166II | GTNNAC | 5 cut(s) | 212, 278, 541, 1119, 1264 |
| Hpy188I | TCNGA | 8 cut(s) | 685, 699, 798, 997, 1162, 1229, 1245, 1313 |
| Hpy188III | TCNNGA | 4 cut(s) | 224, 443, 1136, 1175 |
| Hpy8I | GTNNAC | 5 cut(s) | 212, 278, 541, 1119, 1264 |
| Hpy99I | CGWCG | 2 cut(s) | 111, 354 |
| HpyAV | CCTTC | 5 cut(s) | 246, 520, 734, 928, 1068 |
| HpyCH4III | ACNGT | 5 cut(s) | 216, 335, 650, 852, 1268 |
| HpyCH4IV | ACGT | 4 cut(s) | 139, 172, 352, 722 |
| HpyCH4V | TGCA | 2 cut(s) | 835, 1154 |
| HpyF3I | CTNAG | 5 cut(s) | 99, 241, 716, 1093, 1161 |
| HpySE526I | ACGT | 4 cut(s) | 139, 172, 352, 722 |
| Hsp92I | GRCGYC | 3 cut(s) | 139, 172, 512 |
| Hsp92II | CATG | 5 cut(s) | 92, 284, 428, 536, 1241 |
| Kzo9I | GATC | 4 cut(s) | 558, 670, 817, 874 |
| LguI | GCTCTTC | 1 cut(s) | 441 |
| LmnI | GCTCC | 2 cut(s) | 565, 1010 |
| Lsp1109I | GCAGC | 2 cut(s) | 1142, 1193 |
| LweI | GCATC | 2 cut(s) | 471, 1222 |
| MaeI | CTAG | 1 cut(s) | 555 |
| MaeII | ACGT | 4 cut(s) | 139, 172, 352, 722 |
| MaeIII | GTNAC | 5 cut(s) | 140, 155, 173, 188, 428 |
| MalI | GATC | 4 cut(s) | 560, 672, 819, 876 |
| MbiI | CCGCTC | 1 cut(s) | 229 |
| MboI | GATC | 4 cut(s) | 558, 670, 817, 874 |
| MfeI | CAATTG | 1 cut(s) | 1060 |
| MflI | RGATCY | 1 cut(s) | 558 |
| MhlI | GDGCHC | 1 cut(s) | 664 |
| MluCI | AATT | 8 cut(s) | 73, 286, 629, 701, 799, 1032, 1060, 1139 |
| MmeI | TCCRAC | 3 cut(s) | 561, 776, 947 |
| MseI | TTAA | 5 cut(s) | 161, 194, 455, 477, 1035 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| MspCI | CTTAAG | 2 cut(s) | 160, 193 |
| MspR9I | CCNGG | 4 cut(s) | 114, 563, 764, 856 |
| MunI | CAATTG | 1 cut(s) | 1060 |
| MvaI | CCWGG | 4 cut(s) | 114, 563, 764, 856 |
| NdeII | GATC | 4 cut(s) | 558, 670, 817, 874 |
| NlaIII | CATG | 5 cut(s) | 92, 284, 428, 536, 1241 |
| NlaIV | GGNNCC | 2 cut(s) | 560, 1090 |
| NmuCI | GTSAC | 4 cut(s) | 140, 155, 173, 188 |
| PceI | AGGCCT | 1 cut(s) | 762 |
| PciSI | GCTCTTC | 1 cut(s) | 441 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1305 |
| PfeI | GAWTC | 5 cut(s) | 119, 304, 1157, 1171, 1304 |
| PfoI | TCCNGGA | 2 cut(s) | 561, 854 |
| PkrI | GCNGC | 2 cut(s) | 1132, 1183 |
| Ppu21I | YACGTR | 1 cut(s) | 723 |
| PpuMI | RGGWCCY | 1 cut(s) | 1041 |
| Psp5II | RGGWCCY | 1 cut(s) | 1041 |
| Psp6I | CCWGG | 4 cut(s) | 112, 561, 762, 854 |
| PspGI | CCWGG | 4 cut(s) | 112, 561, 762, 854 |
| PspN4I | GGNNCC | 2 cut(s) | 560, 1090 |
| PspPI | GGNCC | 1 cut(s) | 1041 |
| PspPPI | RGGWCCY | 1 cut(s) | 1041 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1160 |
| PsuI | RGATCY | 1 cut(s) | 558 |
| RsaI | GTAC | 3 cut(s) | 79, 264, 721 |
| RsaNI | GTAC | 3 cut(s) | 78, 263, 720 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| SapI | GCTCTTC | 1 cut(s) | 441 |
| SaqAI | TTAA | 5 cut(s) | 161, 194, 455, 477, 1035 |
| SatI | GCNGC | 2 cut(s) | 1131, 1182 |
| Sau3AI | GATC | 4 cut(s) | 558, 670, 817, 874 |
| Sau96I | GGNCC | 1 cut(s) | 1041 |
| ScrFI | CCNGG | 4 cut(s) | 114, 563, 764, 856 |
| SduI | GDGCHC | 1 cut(s) | 664 |
| SfaNI | GCATC | 2 cut(s) | 471, 1222 |
| SfcI | CTRYAG | 1 cut(s) | 322 |
| SinI | GGWCC | 1 cut(s) | 1041 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 3 cut(s) | 160, 193, 569 |
| SmoI | CTYRAG | 3 cut(s) | 160, 193, 569 |
| SnaBI | TACGTA | 1 cut(s) | 723 |
| Sse9I | AATT | 8 cut(s) | 73, 286, 629, 701, 799, 1032, 1060, 1139 |
| SseBI | AGGCCT | 1 cut(s) | 762 |
| SsiI | CCGC | 2 cut(s) | 229, 658 |
| SspMI | CTAG | 1 cut(s) | 555 |
| StuI | AGGCCT | 1 cut(s) | 762 |
| StyD4I | CCNGG | 4 cut(s) | 112, 561, 762, 854 |
| TaaI | ACNGT | 5 cut(s) | 216, 335, 650, 852, 1268 |
| TaiI | ACGT | 4 cut(s) | 142, 175, 355, 725 |
| TaqI | TCGA | 4 cut(s) | 11, 65, 307, 623 |
| TasI | AATT | 8 cut(s) | 73, 286, 629, 701, 799, 1032, 1060, 1139 |
| TatI | WGTACW | 1 cut(s) | 77 |
| TfiI | GAWTC | 5 cut(s) | 119, 304, 1157, 1171, 1304 |
| Tru1I | TTAA | 5 cut(s) | 161, 194, 455, 477, 1035 |
| Tru9I | TTAA | 5 cut(s) | 161, 194, 455, 477, 1035 |
| TscAI | CASTG | 1 cut(s) | 855 |
| TseFI | GTSAC | 4 cut(s) | 140, 155, 173, 188 |
| TseI | GCWGC | 2 cut(s) | 1130, 1181 |
| Tsp45I | GTSAC | 4 cut(s) | 140, 155, 173, 188 |
| TspDTI | ATGAA | 6 cut(s) | 360, 413, 549, 612, 795, 1038 |
| TspGWI | ACGGA | 2 cut(s) | 505, 1297 |
| TspRI | CASTG | 1 cut(s) | 855 |
| Vha464I | CTTAAG | 2 cut(s) | 160, 193 |
| VpaK11BI | GGWCC | 1 cut(s) | 1041 |
| XapI | RAATTY | 3 cut(s) | 629, 799, 1139 |
| XmiI | GTMKAC | 3 cut(s) | 211, 540, 1118 |
| XspI | CTAG | 1 cut(s) | 555 |
| ZraI | GACGTC | 2 cut(s) | 140, 173 |