Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

70553684 .. 70559198

Gene Structure 5515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG530000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCCAGCTAAATTATTCCTTTTTGTTTTTCCTGCTTATAATTCTGTTGGTGGAACTGAAACGACAGACTATAGTCCATCCAGGTCCCTTGAAAATGAAAGTAAGAGTAGGAAGAGACAGCACTTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAATTCCAAACGAGCCTGAAGATGAAGCTAAAGAAGCCAGCAGTGTTATTCAAAAGAAGTTACAGGTAGTACAGTCGGAGCTCAAAATGGTTGAGCACCGGAGATCTCAATTAGAGATCTACCTGGGAGAGAGGTCTAAAGAAGTAGATAGTCTTACTTCAAAAATACAAGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGAATGTAAGAGGATCTCCCATAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAGAGATCACAGGTCCGACTAAATAAGTTGGGAGATCAGCTTGGTTTAGATACTTATGGAATTGATGCCAATGAAGAGGATTCAAGCATTAATATTGTCAGTGATGGGGAGACTCATTTTCCAGTCCCCATAAATAAGGAGCGGCTGAATGATGTTTCTCCAAGCAAGAAAAGGCTCGATGTAAATAGGGATTCTGCCAAAGAACCAAAACAAGCTTTTCCAACAAGAGAGTACCTTACCACAACAAGAAGACCTCAGAAGCTCTCTCGGTGGAACAAAAACCCTGCGCAATCAAATTTTGTGCATGAAAATGATGCAATGAATAACGGAATTGGGAGTCCAAAGCTCTTAGCAGAGGACGACAAGCATGACAGGAGCAAGGCTGCTTCCTCTAGCGTCGTCTCTGCTGATGTGATAAAGAGTTCAGAGTCAGGACCTGTGGTACCCTCAACCAGCATGGCAGCTCACGCAGTGGATACTGAAAATGACATTGAACTGGACGTTAAAGTTGAGAATGTTGAGAATGCTTCTAGAAGAATCGAGGGGGAACCTACATATGAGAGCGGGATCTTTCCATTTCCACTTCCTCCACCACCCCCATTCCCTCCGAAGAACTTTCCACAGCATGAGGGCGATGATGAGATTGTAGATATTGTGGATGGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

369

Amino Acids

41.52

Weight (kDa)

5.72

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
Acc16I	TGCGCA	1 cut(s)	726
Acc65I	GGTACC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	880
AccBSI	CCGCTC	2 cut(s)	580, 1002
AciI	CCGC	2 cut(s)	580, 1002
AclWI	GGATC	2 cut(s)	380, 1013
AcsI	RAATTY	2 cut(s)	159, 733
AcuI	CTGAAG	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	910
AfaI	GTAC	3 cut(s)	228, 671, 882
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	6 cut(s)	92, 209, 318, 420, 522, 932
AjnI	CCWGG	2 cut(s)	80, 279
AluBI	AGCT	9 cut(s)	8, 185, 238, 331, 478, 653, 700, 784, 902
AluI	AGCT	9 cut(s)	8, 185, 238, 331, 478, 653, 700, 784, 902
Alw21I	GWGCWC	2 cut(s)	240, 255
Alw26I	GTCTC	3 cut(s)	109, 542, 844
AlwI	GGATC	2 cut(s)	380, 1013
AlwNI	CAGNNNCTG	1 cut(s)	875
ApeKI	GCWGC	2 cut(s)	821, 899
ApoI	RAATTY	2 cut(s)	159, 733
AseI	ATTAAT	1 cut(s)	528
Asp718I	GGTACC	1 cut(s)	880
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	3 cut(s)	84, 451, 872
AvaII	GGWCC	3 cut(s)	84, 451, 872
BanI	GGYRCC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	240, 255
BbvI	GCAGC	2 cut(s)	808, 911
BccI	CCATC	3 cut(s)	85, 536, 1091
BciT130I	CCWGG	2 cut(s)	82, 281
BciVI	GTATCC	2 cut(s)	417, 907
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	109, 542, 844
BfaI	CTAG	2 cut(s)	831, 969
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	437
BfuI	GTATCC	2 cut(s)	417, 907
BglII	AGATCT	2 cut(s)	260, 273
BisI	GCNGC	3 cut(s)	581, 822, 900
BlsI	GCNGC	3 cut(s)	582, 823, 901
Bme1390I	CCNGG	2 cut(s)	82, 281
Bme18I	GGWCC	3 cut(s)	84, 451, 872
BmgT120I	GGNCC	3 cut(s)	84, 451, 872
BmiI	GGNNCC	3 cut(s)	86, 882, 987
BmrFI	CCNGG	2 cut(s)	82, 281
BmsI	GCATC	2 cut(s)	493, 742
BoxI	GACNNNNGTC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	694
BpuEI	CTTGAG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	560, 939
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	82, 281
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	77, 133, 1102
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	1 cut(s)	707
BseNI	ACTGG	2 cut(s)	560, 939
BseXI	GCAGC	2 cut(s)	808, 911
BshNI	GGYRCC	1 cut(s)	880
BsiHKAI	GWGCWC	2 cut(s)	240, 255
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	2 cut(s)	70, 548
BsmAI	GTCTC	3 cut(s)	109, 542, 844
BsmBI	CGTCTC	1 cut(s)	844
BsmFI	GGGAC	2 cut(s)	70, 548
BsmI	GAATGC	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	240, 255
Bsp143I	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
BspACI	CCGC	2 cut(s)	580, 1002
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	86, 882, 987
BspPI	GGATC	2 cut(s)	380, 1013
BspT107I	GGYRCC	1 cut(s)	880
BspTI	CTTAAG	1 cut(s)	437
BsrBI	CCGCTC	2 cut(s)	580, 1002
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	560, 939
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
Bst2UI	CCWGG	2 cut(s)	82, 281
Bst4CI	ACNGT	2 cut(s)	137, 231
Bst6I	CTCTTC	2 cut(s)	107, 507
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	6, 196
BstDEI	CTNAG	2 cut(s)	693, 787
BstF5I	GGATG	3 cut(s)	77, 133, 1102
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	7 cut(s)	133, 263, 276, 375, 446, 475, 1008
BstMAI	GTCTC	3 cut(s)	109, 542, 844
BstMBI	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 905
BstNI	CCWGG	2 cut(s)	82, 281
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	80, 279
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	808, 911
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	4 cut(s)	260, 273, 372, 1005
BstYI	RGATCY	4 cut(s)	260, 273, 372, 1005
BsuI	GTATCC	2 cut(s)	417, 907
BtgZI	GCGATG	1 cut(s)	1086
BtsCI	GGATG	3 cut(s)	77, 133, 1102
BtsI	GCAGTG	2 cut(s)	205, 915
BtsIMutI	CAGTG	4 cut(s)	142, 205, 544, 915
Cac8I	GCNNGC	2 cut(s)	6, 196
CaiI	CAGNNNCTG	1 cut(s)	875
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	3 cut(s)	84, 451, 872
CseI	GACGC	1 cut(s)	823
Csp6I	GTAC	3 cut(s)	227, 670, 881
CviAII	CATG	4 cut(s)	743, 806, 895, 1064
CviQI	GTAC	3 cut(s)	227, 670, 881
DdeI	CTNAG	2 cut(s)	693, 787
DpnI	GATC	7 cut(s)	132, 262, 275, 374, 445, 474, 1007
DpnII	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
DraIII	CACNNNGTG	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	107, 507
EarI	CTCTTC	2 cut(s)	107, 507
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	3 cut(s)	84, 451, 872
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	84, 872
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	80, 279
EcoT38I	GRGCYC	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	844
FaeI	CATG	4 cut(s)	746, 809, 898, 1067
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	2 cut(s)	70, 548
FatI	CATG	4 cut(s)	742, 805, 894, 1063
FauI	CCCGC	1 cut(s)	995
FauNDI	CATATG	1 cut(s)	994
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	581, 822, 900
FokI	GGATG	2 cut(s)	64, 140
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	581, 822, 900
FspBI	CTAG	2 cut(s)	831, 969
FspI	TGCGCA	1 cut(s)	726
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	3 cut(s)	581, 822, 900
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	823
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	4 cut(s)	746, 809, 898, 1067
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	6 cut(s)	518, 550, 629, 775, 866, 975
HpaII	CCGG	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	235, 455, 696, 865, 1047
Hpy188III	TCNNGA	3 cut(s)	147, 870, 969
Hpy99I	CGWCG	1 cut(s)	839
HpyCH4III	ACNGT	2 cut(s)	137, 231
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	2 cut(s)	742, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 905
HpyF3I	CTNAG	2 cut(s)	693, 787
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	4 cut(s)	746, 809, 898, 1067
HspAI	GCGC	1 cut(s)	725
KpnI	GGTACC	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
LmnI	GCTCC	3 cut(s)	235, 577, 813
Lsp1109I	GCAGC	2 cut(s)	808, 911
LweI	GCATC	2 cut(s)	493, 742
MaeI	CTAG	2 cut(s)	831, 969
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	7 cut(s)	132, 262, 275, 374, 445, 474, 1007
MbiI	CCGCTC	2 cut(s)	580, 1002
MboI	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
MboII	GAAGA	6 cut(s)	124, 188, 524, 699, 984, 1060
MflI	RGATCY	4 cut(s)	260, 273, 372, 1005
MhlI	GDGCHC	2 cut(s)	240, 255
MluCI	AATT	8 cut(s)	11, 40, 159, 266, 341, 498, 733, 768
MlyI	GAGTC	3 cut(s)	544, 784, 875
MmeI	TCCRAC	3 cut(s)	213, 478, 683
MseI	TTAA	4 cut(s)	387, 438, 528, 942
MslI	CAYNNNNRTG	2 cut(s)	126, 747
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	82, 281
Mva1269I	GAATGC	1 cut(s)	967
MvaI	CCWGG	2 cut(s)	82, 281
MwoI	GCNNNNNNNGC	2 cut(s)	191, 905
NdeI	CATATG	1 cut(s)	994
NdeII	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
NlaIII	CATG	4 cut(s)	746, 809, 898, 1067
NlaIV	GGNNCC	3 cut(s)	86, 882, 987
NsbI	TGCGCA	1 cut(s)	726
PctI	GAATGC	1 cut(s)	967
PfeI	GAWTC	3 cut(s)	518, 629, 975
PkrI	GCNGC	3 cut(s)	582, 823, 901
PleI	GAGTC	3 cut(s)	544, 783, 874
PpsI	GAGTC	3 cut(s)	544, 783, 874
PpuMI	RGGWCCY	2 cut(s)	84, 872
PshAI	GACNNNNGTC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	528
PsiI	TTATAA	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	240
Psp5II	RGGWCCY	2 cut(s)	84, 872
Psp6I	CCWGG	2 cut(s)	80, 279
PspGI	CCWGG	2 cut(s)	80, 279
PspN4I	GGNNCC	3 cut(s)	86, 882, 987
PspPI	GGNCC	3 cut(s)	84, 451, 872
PspPPI	RGGWCCY	2 cut(s)	84, 872
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	4 cut(s)	260, 273, 372, 1005
RsaI	GTAC	3 cut(s)	228, 671, 882
RsaNI	GTAC	3 cut(s)	227, 670, 881
RseI	CAYNNNNRTG	2 cut(s)	126, 747
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	387, 438, 528, 942
SatI	GCNGC	3 cut(s)	581, 822, 900
Sau3AI	GATC	7 cut(s)	130, 260, 273, 372, 443, 472, 1005
Sau96I	GGNCC	3 cut(s)	84, 451, 872
SchI	GAGTC	3 cut(s)	544, 784, 875
ScrFI	CCNGG	2 cut(s)	82, 281
SduI	GDGCHC	2 cut(s)	240, 255
SfaNI	GCATC	2 cut(s)	493, 742
SfcI	CTRYAG	1 cut(s)	70
SinI	GGWCC	3 cut(s)	84, 451, 872
SmiMI	CAYNNNNRTG	2 cut(s)	126, 747
SmlI	CTYRAG	2 cut(s)	332, 437
SmoI	CTYRAG	2 cut(s)	332, 437
Sse9I	AATT	8 cut(s)	11, 40, 159, 266, 341, 498, 733, 768
SsiI	CCGC	2 cut(s)	580, 1002
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	2 cut(s)	831, 969
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	80, 279
TaaI	ACNGT	2 cut(s)	137, 231
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	2 cut(s)	615, 978
TasI	AATT	8 cut(s)	11, 40, 159, 266, 341, 498, 733, 768
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	3 cut(s)	518, 629, 975
Tru1I	TTAA	4 cut(s)	387, 438, 528, 942
Tru9I	TTAA	4 cut(s)	387, 438, 528, 942
TscAI	CASTG	4 cut(s)	142, 205, 544, 915
TseI	GCWGC	2 cut(s)	821, 899
TspDTI	ATGAA	5 cut(s)	111, 195, 525, 759, 773
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	4 cut(s)	142, 205, 544, 915
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	3 cut(s)	84, 451, 872
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	2 cut(s)	159, 733
XbaI	TCTAGA	1 cut(s)	968
XspI	CTAG	2 cut(s)	831, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.