Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

72814255 .. 72817889

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTACCCATGTTATTCCATAATGGTAGGCGGGACTCTGGAGGTAGTGACTTGAGGGATACAATTGACAGAAGCTATTCTCCAAAGCAAGAGTATTCACCAGCAAGAGATGCAAGAGGCCGACATACACTTCGTGAATATAGTCCATCCAGGTCCCTTGAAAACGAAAGTAAGAGAAGGAAGAGACAGCACTTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAATTCCAAACGAGCCTGAAGATGAAGCTAAAGAAGCCAGAAGTGTTATTCAAAAGAAGTTACAGGAAGTGCAGTCGAAGCTCAAAATTGCTGAGCAACGCAGATCTCAATTAGAGATCTACCTGAGAGAGAGGTCTCAAGAAGTGGGTAGTCTTACCTCAAAAATACAAGAGCTTGAGGCTCAATTATGCAAAGAGAAAGAGGAATGTAAGAGGATCTCCCACAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAGAGATCACAGGTCCGACTAAATAAGTTGGGAGATCAGCTTTGTTTAGATACTAATGGAATTGATGCCAATGAAGAGGATTCAAGCATTAATATTGTCAGCGATGGGGAGACTCATTTCCCAGTCCCCTTAAATAAGGAGCGGCTGAATGATGTTTCTCCGAGCAAGAAAAGGCTCGATGTAAATATGGATTCTGCCAAAGAACCAAAACAAGGTGCTTTTTCAACAAGAGAGTATCTTACCACAACAAGAAGGCCACATAAGCTCTCTCGGTGGAACATAAACCCTGCTCAATCAAATCTTGTGCATGAAAATGATGCAATGAATAATGGAATTGGGAGTCCAAAGCTCTTAGCAAAGGACAACAAGCATGACAGGAGGAAGGTCGCTTCCTCTAGCGTCATCTCTGCTGATATGTTAGAGAGTTCGGAGTCAGGACCTGTGGTACCCTCAACCAGCATGGCAGCAGTGGATACTGAAAATGACATTGAACTGGGTGGTGAAGTTGAGAATGTTGAGAATGTTGAGAATGCTTCTAGAAGAATTGAGGGGGAACCTACATATGAGAGCGGGATATTTTCACTTCCACTTCCTCCACCACCCCCATTCCTGCCGAAGAACTTATCACAGCATGAGGGCGATGATGAGATTGTAGATATTGTGGATGGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

395

Amino Acids

44.53

Weight (kDa)

6.27

Isoelectric Point (pI)

72.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	952
AccBSI	CCGCTC	2 cut(s)	649, 1077
AciI	CCGC	3 cut(s)	31, 649, 1077
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	954
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	161, 278, 489, 591, 732, 998
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	7 cut(s)	75, 254, 307, 400, 547, 772, 856
AluI	AGCT	7 cut(s)	75, 254, 307, 400, 547, 772, 856
Alw26I	GTCTC	3 cut(s)	178, 366, 611
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	947
AoxI	GGCC	2 cut(s)	118, 761
ApeKI	GCWGC	1 cut(s)	971
ApoI	RAATTY	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	952
AspS9I	GGNCC	3 cut(s)	153, 520, 944
AsuHPI	GGTGA	2 cut(s)	90, 1019
AvaII	GGWCC	3 cut(s)	153, 520, 944
BanI	GGYRCC	1 cut(s)	952
BbvI	GCAGC	1 cut(s)	983
BccI	CCATC	3 cut(s)	154, 605, 1166
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	3 cut(s)	52, 486, 973
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	178, 366, 611
BfaI	CTAG	2 cut(s)	903, 1044
BfrI	CTTAAG	1 cut(s)	506
BfuI	GTATCC	3 cut(s)	52, 486, 973
BglII	AGATCT	2 cut(s)	329, 342
BisI	GCNGC	2 cut(s)	650, 972
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	2 cut(s)	651, 973
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	3 cut(s)	153, 520, 944
BmgT120I	GGNCC	3 cut(s)	153, 520, 944
BmiI	GGNNCC	3 cut(s)	155, 954, 1062
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	2 cut(s)	623, 1010
BmsI	GCATC	3 cut(s)	100, 562, 814
BmuI	ACTGGG	2 cut(s)	623, 1010
BpmI	CTGGAG	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	3 cut(s)	73, 348, 422
BsaI	GGTCTC	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	2 cut(s)	629, 1005
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	146, 202, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	2 cut(s)	309, 341
BseNI	ACTGG	2 cut(s)	629, 1005
BseXI	GCAGC	1 cut(s)	983
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	120, 763
BshNI	GGYRCC	1 cut(s)	952
BslFI	GGGAC	3 cut(s)	47, 139, 617
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	3 cut(s)	178, 366, 611
BsmFI	GGGAC	3 cut(s)	47, 139, 617
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	120, 763
Bso31I	GGTCTC	1 cut(s)	366
Bsp143I	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	3 cut(s)	31, 649, 1077
BspANI	GGCC	2 cut(s)	120, 763
BspCNI	CTCAG	2 cut(s)	310, 342
BspLI	GGNNCC	3 cut(s)	155, 954, 1062
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	952
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	366
BsrBI	CCGCTC	2 cut(s)	649, 1077
BsrDI	GCAATG	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	629, 1005
BssMI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	176, 576
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	318, 350, 859
BstF5I	GGATG	3 cut(s)	146, 202, 1177
BstKTI	GATC	6 cut(s)	202, 332, 345, 444, 515, 544
BstMAI	GTCTC	3 cut(s)	178, 366, 611
BstMBI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 260, 304, 769
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	983
BstX2I	RGATCY	3 cut(s)	329, 342, 441
BstYI	RGATCY	3 cut(s)	329, 342, 441
BsuI	GTATCC	3 cut(s)	52, 486, 973
BsuRI	GGCC	2 cut(s)	120, 763
BtgZI	GCGATG	2 cut(s)	624, 1161
BtsCI	GGATG	3 cut(s)	146, 202, 1177
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	211, 981
CaiI	CAGNNNCTG	1 cut(s)	947
Cfr13I	GGNCC	3 cut(s)	153, 520, 944
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	953
CviAII	CATG	5 cut(s)	10, 815, 878, 967, 1139
CviQI	GTAC	1 cut(s)	953
DdeI	CTNAG	3 cut(s)	318, 350, 859
DpnI	GATC	6 cut(s)	201, 331, 344, 443, 514, 543
DpnII	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
DraIII	CACNNNGTG	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	176, 576
EarI	CTCTTC	2 cut(s)	176, 576
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	153, 520, 944
Eco57I	CTGAAG	1 cut(s)	264
EcoO109I	RGGNCCY	2 cut(s)	153, 944
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	149
FaeI	CATG	5 cut(s)	13, 818, 881, 970, 1142
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	3 cut(s)	47, 139, 617
FatI	CATG	5 cut(s)	9, 814, 877, 966, 1138
FauI	CCCGC	2 cut(s)	24, 1070
FauNDI	CATATG	1 cut(s)	1069
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	650, 972
FokI	GGATG	2 cut(s)	133, 209
Fsp4HI	GCNGC	2 cut(s)	650, 972
FspBI	CTAG	2 cut(s)	903, 1044
GluI	GCNGC	2 cut(s)	650, 972
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	120, 763
HgaI	GACGC	1 cut(s)	895
Hin1II	CATG	5 cut(s)	13, 818, 881, 970, 1142
HinfI	GANTC	6 cut(s)	35, 587, 619, 698, 847, 938
HphI	GGTGA	2 cut(s)	90, 1019
Hpy188I	TCNGA	3 cut(s)	524, 669, 937
Hpy188III	TCNNGA	6 cut(s)	39, 134, 216, 365, 942, 1044
HpyAV	CCTTC	3 cut(s)	171, 753, 883
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	113, 298, 417, 814, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 260, 304, 769
HpyF3I	CTNAG	3 cut(s)	318, 350, 859
Hsp92II	CATG	5 cut(s)	13, 818, 881, 970, 1142
KpnI	GGTACC	1 cut(s)	956
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	1 cut(s)	983
LweI	GCATC	3 cut(s)	100, 562, 814
MaeI	CTAG	2 cut(s)	903, 1044
MaeIII	GTNAC	3 cut(s)	3, 47, 285
MalI	GATC	6 cut(s)	201, 331, 344, 443, 514, 543
MbiI	CCGCTC	2 cut(s)	649, 1077
MboI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
MboII	GAAGA	5 cut(s)	193, 257, 593, 1059, 1135
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	329, 342, 441
MluCI	AATT	8 cut(s)	63, 228, 312, 335, 410, 567, 840, 1050
MlyI	GAGTC	4 cut(s)	29, 613, 856, 947
MmeI	TCCRAC	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	4 cut(s)	456, 507, 597, 638
MslI	CAYNNNNRTG	2 cut(s)	195, 819
MspCI	CTTAAG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	4 cut(s)	110, 260, 304, 769
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
NlaIII	CATG	5 cut(s)	13, 818, 881, 970, 1142
NlaIV	GGNNCC	3 cut(s)	155, 954, 1062
NmuCI	GTSAC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	587, 698
PkrI	GCNGC	2 cut(s)	651, 973
PleI	GAGTC	4 cut(s)	29, 613, 855, 946
PpsI	GAGTC	4 cut(s)	29, 613, 855, 946
PpuMI	RGGWCCY	2 cut(s)	153, 944
PshBI	ATTAAT	1 cut(s)	597
Psp5II	RGGWCCY	2 cut(s)	153, 944
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	155, 954, 1062
PspPI	GGNCC	3 cut(s)	153, 520, 944
PspPPI	RGGWCCY	2 cut(s)	153, 944
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	3 cut(s)	329, 342, 441
RsaI	GTAC	1 cut(s)	954
RsaNI	GTAC	1 cut(s)	953
RseI	CAYNNNNRTG	2 cut(s)	195, 819
SaqAI	TTAA	4 cut(s)	456, 507, 597, 638
SatI	GCNGC	2 cut(s)	650, 972
Sau3AI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
Sau96I	GGNCC	3 cut(s)	153, 520, 944
SchI	GAGTC	4 cut(s)	29, 613, 856, 947
ScrFI	CCNGG	1 cut(s)	151
SfaNI	GCATC	3 cut(s)	100, 562, 814
SinI	GGWCC	3 cut(s)	153, 520, 944
SmiMI	CAYNNNNRTG	2 cut(s)	195, 819
SmlI	CTYRAG	4 cut(s)	52, 363, 401, 506
SmoI	CTYRAG	4 cut(s)	52, 363, 401, 506
Sse9I	AATT	8 cut(s)	63, 228, 312, 335, 410, 567, 840, 1050
SsiI	CCGC	3 cut(s)	31, 649, 1077
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	903, 1044
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	302, 684
TasI	AATT	8 cut(s)	63, 228, 312, 335, 410, 567, 840, 1050
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	587, 698
Tru1I	TTAA	4 cut(s)	456, 507, 597, 638
Tru9I	TTAA	4 cut(s)	456, 507, 597, 638
TscAI	CASTG	2 cut(s)	211, 981
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	971
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	4 cut(s)	264, 594, 831, 845
TspRI	CASTG	2 cut(s)	211, 981
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	153, 520, 944
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	228
XbaI	TCTAGA	1 cut(s)	1043
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	2 cut(s)	903, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.