Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

20982608 .. 20983085

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGAGACTACTGGTTTTCCAGTCACCCCACGTAAATGAGCAGCTGAGTTATGCTTCTCCAAGCAAGAAAAGGCTGGATGCTATTAGTGGTTCTGCCAAAGAATCAAAACAAATTTTTATTATGGATGCTCACACTTTCGAGCTGTATACCAGCTCATTGAACAAGAGGACATCTAGGAGACCAAAGAAGCTCTCTCGGTGCAGCACACACCCTCCTCAATCAAATTTTGACAAGGAGGATCCAGTGAACAATGGAATAGGTGATGATCCAAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

9.61

Isoelectric Point (pI)

66.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AclWI	GGATC	3 cut(s)	236, 249, 263
AcsI	RAATTY	2 cut(s)	114, 226
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	4 cut(s)	46, 145, 156, 193
AluI	AGCT	4 cut(s)	46, 145, 156, 193
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	3 cut(s)	236, 249, 263
ApeKI	GCWGC	2 cut(s)	43, 204
ApoI	RAATTY	2 cut(s)	114, 226
AsuHPI	GGTGA	3 cut(s)	16, 18, 275
BamHI	GGATCC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	55, 216
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	177
BisI	GCNGC	2 cut(s)	44, 205
BlsI	GCNGC	2 cut(s)	45, 206
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	2 cut(s)	70, 118
BsaAI	YACGTR	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bse1I	ACTGG	3 cut(s)	18, 22, 245
BseGI	GGATG	2 cut(s)	85, 133
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	18, 22, 245
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	55, 216
BsgI	GTGCAG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	241, 268
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	236, 249, 263
BspTNI	GGTCTC	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	18, 22, 245
BssMI	GATC	2 cut(s)	241, 268
BssNAI	GTATAC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	85, 133
BstKTI	GATC	2 cut(s)	244, 271
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	241, 268
BstV1I	GCAGC	2 cut(s)	55, 216
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BstZ17I	GTATAC	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	85, 133
BtsIMutI	CAGTG	1 cut(s)	252
CviJI	RGCY	5 cut(s)	46, 76, 145, 156, 193
CviKI_1	RGCY	5 cut(s)	46, 76, 145, 156, 193
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	243, 270
DpnII	GATC	2 cut(s)	241, 268
Eco31I	GGTCTC	1 cut(s)	175
FaiI	YATR	3 cut(s)	54, 125, 150
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	44, 205
FokI	GGATG	2 cut(s)	92, 140
Fsp4HI	GCNGC	2 cut(s)	44, 205
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	44, 205
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	3 cut(s)	16, 18, 275
Hpy166II	GTNNAC	2 cut(s)	150, 250
Hpy8I	GTNNAC	2 cut(s)	150, 250
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	241, 268
LpnPI	CCDG	4 cut(s)	35, 62, 166, 258
Lsp1109I	GCAGC	2 cut(s)	55, 216
LweI	GCATC	2 cut(s)	70, 118
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	2 cut(s)	243, 270
MboI	GATC	2 cut(s)	241, 268
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	114, 226
MnlI	CCTC	4 cut(s)	162, 225, 228, 232
MseI	TTAA	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	46
NdeII	GATC	2 cut(s)	241, 268
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	45, 206
Ppu21I	YACGTR	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	2 cut(s)	44, 205
Sau3AI	GATC	2 cut(s)	241, 268
SetI	ASST	6 cut(s)	36, 48, 147, 158, 195, 265
SfaNI	GCATC	2 cut(s)	70, 118
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	114, 226
SspMI	CTAG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	114, 226
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	43, 204
Tsp45I	GTSAC	1 cut(s)	24
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	114, 226
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.