Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Reverse (-)

61094482 .. 61097134

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0480100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCTTCCTTTAAGGTCTCAGGGATGCTTTGCCTCTCTGCTGTTTTGTTAAGTTCTTTCATGGTCATGGCTGCAGCCGGTAATTTCTATCAAGACTTTGACATCACATTCGGCGAACAACGTGCTAAGATATTCAACGGAGGACAACATCTCACACTCGACCTCGACCAGTACTCCGGCTCTGGTTTCAAGTCCAAGAAGGAGTACTTGTTTGGAAGGATCGACATGCAAATCAAACTTGTCGCTGGCAACTCAGCTGGCACTGTCACTGCATATTATTTGTCTTCTCAAGGTCCAACTCATGATGAAATCGATTTTGAGTTTTTGGGAAACTCTTCTGGTGAACCCTACACTCTCCACACCAATGTGTTCAGCCAGGGGAAAGGGAACAGAGAACAACAATTCCATCTTTGGTTTGATCCTTCAAACGCCTTCCATACCTACTCGCTTGTCTGGAACAGCCAACGCATTATATTCTTGGTGGATAATATTCCAATTAGAGTGTTCAACAACTTGGAGTCAGTTGGTGTTCCATTCCCCAAAAACCAACCGATGAGGATTTACTCGAGCCTGTGGAATGCTGATGACTGGGCTACACAAGGTGGGCGTGTGAAGACTGACTGGACTCATGCTCCTTTCACTGCCTCTTACAGAAACTTCAAGGCCAATGCCTGCGTCGCTGGCTCATCGTCATCATCATGCGGTGTCTCCACTTCTGCTTCAACTAATTCCTTAACTGATCAACAGGGTACATGGCACAATCAAGGTCTAGATGCCGCAGGCCGAAACAGGATAAGATGGGTGCAGCAGAAGTTCATGGTCTACAACTACTGTACTGACCTAAAACGATTTCCCCAAGGTCTTCCGGTGGAATGTAGACGATCAAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

297

Amino Acids

33.36

Weight (kDa)

8.75

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	30 - 209	2.7e-67	Glycosyl hydrolases family 16
XET_C	PF06955	250 - 292	6.2e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	822, 877
AciI	CCGC	2 cut(s)	702, 777
AclWI	GGATC	2 cut(s)	227, 413
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	4 cut(s)	173, 206, 751, 835
AgsI	TTSAA	6 cut(s)	136, 190, 426, 508, 661, 723
AjnI	CCWGG	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	365
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	22, 712
AlwI	GGATC	2 cut(s)	227, 413
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	663, 781
ApeKI	GCWGC	3 cut(s)	71, 74, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	3 cut(s)	276, 620, 854
BbvI	GCAGC	3 cut(s)	58, 86, 817
BccI	CCATC	2 cut(s)	414, 792
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	22, 712
BfaI	CTAG	2 cut(s)	770, 892
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	72, 75, 777, 806
BlsI	GCNGC	4 cut(s)	73, 76, 778, 807
BmcAI	AGTACT	2 cut(s)	173, 206
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	15, 763
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	3 cut(s)	276, 620, 854
BpuEI	CTTGAG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	376, 856
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	6 cut(s)	158, 188, 194, 224, 616, 646
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	169, 593, 626
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	376, 856
BseGI	GGATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	33, 267
BseNI	ACTGG	3 cut(s)	169, 593, 626
BseXI	GCAGC	3 cut(s)	58, 86, 817
BsgI	GTGCAG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	665, 783
BshVI	ATCGAT	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	78, 177, 866
BsmAI	GTCTC	2 cut(s)	22, 712
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	665, 783
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	219, 418, 739, 881
BspACI	CCGC	2 cut(s)	702, 777
BspANI	GGCC	2 cut(s)	665, 783
BspCNI	CTCAG	2 cut(s)	32, 266
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	2 cut(s)	227, 413
BspTNI	GGTCTC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	169, 593, 626
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	376, 856
BssMI	GATC	4 cut(s)	219, 418, 739, 881
BssT1I	CCWWGG	1 cut(s)	856
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	265, 833
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	5 cut(s)	247, 259, 673, 682, 781
BstDEI	CTNAG	3 cut(s)	19, 126, 253
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	4 cut(s)	222, 421, 742, 884
BstMAI	GTCTC	2 cut(s)	22, 712
BstMBI	GATC	4 cut(s)	219, 418, 739, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 681
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	58, 86, 817
BstV2I	GAAGAC	3 cut(s)	276, 620, 854
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	665, 783
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	2 cut(s)	267, 639
BtsIMutI	CAGTG	3 cut(s)	261, 267, 639
Cac8I	GCNNGC	5 cut(s)	247, 259, 673, 682, 781
CciI	TCATGA	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	4 cut(s)	172, 205, 750, 834
CviAII	CATG	8 cut(s)	61, 67, 226, 302, 629, 699, 753, 817
CviQI	GTAC	4 cut(s)	172, 205, 750, 834
DdeI	CTNAG	3 cut(s)	19, 126, 253
DpnI	GATC	4 cut(s)	221, 420, 741, 883
DpnII	GATC	4 cut(s)	219, 418, 739, 881
DraIII	CACNNNGTG	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	856
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	856
FaeI	CATG	8 cut(s)	64, 70, 229, 305, 632, 702, 756, 820
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	8 cut(s)	60, 66, 225, 301, 628, 698, 752, 816
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	2 cut(s)	822, 877
Fnu4HI	GCNGC	4 cut(s)	72, 75, 777, 806
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	72, 75, 777, 806
FspBI	CTAG	2 cut(s)	770, 892
GluI	GCNGC	4 cut(s)	72, 75, 777, 806
HaeIII	GGCC	2 cut(s)	665, 783
HapII	CCGG	3 cut(s)	78, 177, 866
HgaI	GACGC	1 cut(s)	664
Hin1II	CATG	8 cut(s)	64, 70, 229, 305, 632, 702, 756, 820
HinfI	GANTC	2 cut(s)	518, 625
HpaII	CCGG	3 cut(s)	78, 177, 866
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	344, 823, 878
Hpy188III	TCNNGA	4 cut(s)	92, 302, 454, 770
Hpy8I	GTNNAC	3 cut(s)	344, 823, 878
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	4 cut(s)	193, 210, 432, 442
HpyCH4III	ACNGT	2 cut(s)	265, 833
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	74, 229, 272, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 681
HpyF3I	CTNAG	3 cut(s)	19, 126, 253
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	8 cut(s)	64, 70, 229, 305, 632, 702, 756, 820
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	219, 418, 739, 881
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	3 cut(s)	58, 86, 817
LweI	GCATC	2 cut(s)	15, 763
MaeI	CTAG	2 cut(s)	770, 892
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	221, 420, 741, 883
MboI	GATC	4 cut(s)	219, 418, 739, 881
MboII	GAAGA	4 cut(s)	276, 327, 625, 854
MluCI	AATT	4 cut(s)	82, 401, 495, 727
MlyI	GAGTC	2 cut(s)	527, 619
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	5 cut(s)	44, 134, 173, 549, 655
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	3 cut(s)	12, 50, 734
MslI	CAYNNNNRTG	4 cut(s)	65, 363, 365, 697
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	3 cut(s)	78, 177, 866
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	677, 681
NdeII	GATC	4 cut(s)	219, 418, 739, 881
NlaIII	CATG	8 cut(s)	64, 70, 229, 305, 632, 702, 756, 820
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	565
PagI	TCATGA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	73, 76, 778, 807
PleI	GAGTC	2 cut(s)	526, 619
PpsI	GAGTC	2 cut(s)	526, 619
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	293
PspXI	VCTCGAGB	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	173, 206, 751, 835
RsaNI	GTAC	4 cut(s)	172, 205, 750, 834
RseI	CAYNNNNRTG	4 cut(s)	65, 363, 365, 697
SaqAI	TTAA	3 cut(s)	12, 50, 734
SatI	GCNGC	4 cut(s)	72, 75, 777, 806
Sau3AI	GATC	4 cut(s)	219, 418, 739, 881
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	2 cut(s)	173, 206
SchI	GAGTC	2 cut(s)	527, 619
ScrFI	CCNGG	1 cut(s)	377
SfaNI	GCATC	2 cut(s)	15, 763
SfcI	CTRYAG	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	4 cut(s)	65, 363, 365, 697
SmlI	CTYRAG	2 cut(s)	288, 565
SmoI	CTYRAG	2 cut(s)	288, 565
Sse9I	AATT	4 cut(s)	82, 401, 495, 727
SsiI	CCGC	2 cut(s)	702, 777
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	2 cut(s)	770, 892
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	2 cut(s)	265, 833
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	5 cut(s)	159, 165, 222, 312, 566
TasI	AATT	4 cut(s)	82, 401, 495, 727
TatI	WGTACW	3 cut(s)	171, 204, 833
TauI	GCSGC	1 cut(s)	779
Tru1I	TTAA	3 cut(s)	12, 50, 734
Tru9I	TTAA	3 cut(s)	12, 50, 734
TscAI	CASTG	3 cut(s)	268, 274, 646
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	71, 74, 805
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	49, 321, 805
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	3 cut(s)	268, 274, 646
VpaK11BI	GGWCC	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	822, 877
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	2 cut(s)	770, 892
ZrmI	AGTACT	2 cut(s)	173, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.