Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

12200641 .. 12203129

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCGACGTCGCCACCCAGTCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTTGCATAAATCGGTACATTTAAAGGCCAAGCAGTCCAATAGGGCGGGAAATCCAGAGAACGAAGGCTGGCAATATTGCATGAAGAAAGGACAGGGTCAAACTCCGAAACTTCCTTATTTTGATTGGACAGGGACATTGAGACCATATCCTATATCTAGTAAGCGTGTGGTACCTTCTCATGTTGATCTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAACCCAGTAGTGACCTGCAGCGTGTTGTTGAGGAAGAGTTTCTGTTAATAAAGTCAAAGGGATTTATCCTGAAAAAGTTGGGAGATCAGCTTGGTTTAGATGCTTATGGAATTCGTGCCAATGAAGAGGATTCAAGCATTAATATTGTCAGCGACAGGGAAACTCATTTTCCAGTCCCCTTAAATAAGGAGCAGCTGAATGACGTTTCTCCGAGCAAGAAAAGGCTCGATGTAAATAGGAATTCTTCCAAGGAACCAAAACGAGGTGAAGGGCAAGCTGTGGCTATTGTGGCAGCAGTAACCTTACATGGAAGGTGCCTGCCTTTGCTTCAAACTTTGGAAGAACTGATGGTTGCTGAGGTCTATATAGTGAATCATTGTGATTTGGCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

251

Amino Acids

27.91

Weight (kDa)

6.99

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	10 - 53	2.7e-14	zf-MYND-like zinc finger, mRNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	384
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	307, 675
AciI	CCGC	3 cut(s)	45, 99, 182
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	471, 601
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	153, 309
AfiI	CCNNNNNNNGG	2 cut(s)	358, 623
AgsI	TTSAA	3 cut(s)	79, 495, 692
AluBI	AGCT	6 cut(s)	82, 138, 341, 451, 556, 638
AluI	AGCT	6 cut(s)	82, 138, 341, 451, 556, 638
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	3, 162
ApeKI	GCWGC	5 cut(s)	36, 338, 379, 553, 653
ApoI	RAATTY	2 cut(s)	471, 601
AseI	ATTAAT	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	638
BanI	GGYRCC	2 cut(s)	307, 675
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	5 cut(s)	48, 350, 391, 565, 665
BccI	CCATC	2 cut(s)	338, 703
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	6 cut(s)	37, 99, 339, 380, 554, 654
BlsI	GCNGC	6 cut(s)	38, 100, 340, 381, 555, 655
BmiI	GGNNCC	4 cut(s)	309, 363, 615, 677
BmrI	ACTGGG	2 cut(s)	13, 360
BmsI	GCATC	2 cut(s)	85, 451
BmuI	ACTGGG	2 cut(s)	13, 360
Bpu10I	CCTNAGC	1 cut(s)	717
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 623
Bse1I	ACTGG	3 cut(s)	19, 366, 533
BseDI	CCNNGG	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	358, 623
BseMII	CTCAG	2 cut(s)	125, 708
BseNI	ACTGG	3 cut(s)	19, 366, 533
BseXI	GCAGC	5 cut(s)	48, 350, 391, 565, 665
BsgI	GTGCAG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	5, 164
BshNI	GGYRCC	2 cut(s)	307, 675
BsiHKAI	GWGCWC	1 cut(s)	31
BslFI	GGGAC	3 cut(s)	45, 283, 521
BslI	CCNNNNNNNGG	2 cut(s)	358, 623
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	3 cut(s)	45, 283, 521
BsnI	GGCC	2 cut(s)	5, 164
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	322, 445
BspACI	CCGC	3 cut(s)	45, 99, 182
BspANI	GGCC	2 cut(s)	5, 164
BspCNI	CTCAG	2 cut(s)	124, 709
BspLI	GGNNCC	4 cut(s)	309, 363, 615, 677
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	384
BspT107I	GGYRCC	2 cut(s)	307, 675
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	19, 366, 533
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	2 cut(s)	322, 445
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	390, 480
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	4 cut(s)	140, 206, 636, 680
BstDEI	CTNAG	2 cut(s)	111, 717
BstKTI	GATC	2 cut(s)	325, 448
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	322, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 650
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	5 cut(s)	48, 350, 391, 565, 665
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	5, 164
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	4 cut(s)	140, 206, 636, 680
Csp6I	GTAC	2 cut(s)	152, 308
CviAII	CATG	3 cut(s)	217, 317, 668
CviQI	GTAC	2 cut(s)	152, 308
DdeI	CTNAG	2 cut(s)	111, 717
DpnI	GATC	2 cut(s)	324, 447
DpnII	GATC	2 cut(s)	322, 445
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	390, 480
EarI	CTCTTC	2 cut(s)	390, 480
Eco130I	CCWWGG	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	2 cut(s)	471, 601
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	3 cut(s)	220, 320, 671
FaiI	YATR	9 cut(s)	144, 218, 283, 290, 318, 468, 669, 726, 728
FaqI	GGGAC	3 cut(s)	45, 283, 521
FatI	CATG	3 cut(s)	216, 316, 667
FauI	CCCGC	2 cut(s)	52, 175
Fnu4HI	GCNGC	6 cut(s)	37, 99, 339, 380, 554, 654
Fsp4HI	GCNGC	6 cut(s)	37, 99, 339, 380, 554, 654
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	6 cut(s)	37, 99, 339, 380, 554, 654
HaeIII	GGCC	2 cut(s)	5, 164
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	220, 320, 671
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	348, 491, 733
HphI	GGTGA	1 cut(s)	638
Hpy188I	TCNGA	2 cut(s)	243, 573
Hpy188III	TCNNGA	4 cut(s)	89, 113, 191, 430
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	4 cut(s)	194, 321, 623, 666
HpyCH4IV	ACGT	2 cut(s)	9, 564
HpyCH4V	TGCA	5 cut(s)	36, 108, 142, 216, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 650
HpyF3I	CTNAG	2 cut(s)	111, 717
HpySE526I	ACGT	2 cut(s)	9, 564
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	220, 320, 671
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	322, 445
LmnI	GCTCC	2 cut(s)	135, 550
Lsp1109I	GCAGC	5 cut(s)	48, 350, 391, 565, 665
LweI	GCATC	2 cut(s)	85, 451
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	9, 564
MaeIII	GTNAC	2 cut(s)	371, 658
MalI	GATC	2 cut(s)	324, 447
MboI	GATC	2 cut(s)	322, 445
MboII	GAAGA	7 cut(s)	44, 104, 232, 407, 497, 597, 713
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	74, 471, 601
MnlI	CCTC	6 cut(s)	96, 352, 385, 481, 617, 712
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	6 cut(s)	123, 158, 407, 501, 542, 754
MspA1I	CMGCKG	2 cut(s)	341, 556
MwoI	GCNNNNNNNGC	2 cut(s)	11, 650
NdeII	GATC	2 cut(s)	322, 445
NlaIII	CATG	3 cut(s)	220, 320, 671
NlaIV	GGNNCC	4 cut(s)	309, 363, 615, 677
NmuCI	GTSAC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	348, 491, 733
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	38, 100, 340, 381, 555, 655
PshBI	ATTAAT	1 cut(s)	501
PspN4I	GGNNCC	4 cut(s)	309, 363, 615, 677
PstI	CTGCAG	1 cut(s)	381
PsyI	GACNNNGTC	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	341, 556
RsaI	GTAC	2 cut(s)	153, 309
RsaNI	GTAC	2 cut(s)	152, 308
SaqAI	TTAA	6 cut(s)	123, 158, 407, 501, 542, 754
SatI	GCNGC	6 cut(s)	37, 99, 339, 380, 554, 654
Sau3AI	GATC	2 cut(s)	322, 445
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	85, 451
SfcI	CTRYAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	74, 471, 601
SsiI	CCGC	3 cut(s)	45, 99, 182
SspI	AATATT	2 cut(s)	212, 505
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	609
TaiI	ACGT	2 cut(s)	12, 567
TaqI	TCGA	1 cut(s)	588
TasI	AATT	3 cut(s)	74, 471, 601
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	348, 491, 733
Tru1I	TTAA	6 cut(s)	123, 158, 407, 501, 542, 754
Tru9I	TTAA	6 cut(s)	123, 158, 407, 501, 542, 754
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	5 cut(s)	36, 338, 379, 553, 653
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	233, 498
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	2 cut(s)	471, 601
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.