Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Reverse (-)

2071478 .. 2073999

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTTGATAACCATAAATCTCAATTAGGGGTTCACGTGGAAGAGAAGTCTCAAGAAGTGGATAGTCTCACTTCTAAAATTAAGGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGAATGTAAGAGGATTTCCTACAAGGTGAATAAGTTTGTAAAAGCACATTCTCGTCATTCAAAGATACAAGACCAACTAAAGAGATCACAGGTCCGACTTAATAAGTTGGGAGATCAGCTTGCCTTAGATATTTATGTAACTGATGCCAATGAAGAGGATTCAAGCATTAATATTGTTAGTGATGGTGAGACTACTGGTTTTCCAGTCAACCCCCATAATGAGCAGCTGCATGATGCTTCTCCAAGCAAGAAAAGGCTGGATGCTATTAGGGATACCGCCAAAGAATCAAAACAAAGTGCTCATCCAACAAGAGGACATCTGACAACATCTAGCAGACCAAAGAAGCTCTCTCGGTGGAGCATACACCCTACTCAATCAAATTTTGACAAGGAGGAGCCAGTGAACAATGGAATTGGTGGTCCAAAGGTTTTAGCAAAGCAAGGCAAACATGACAGGAGAAAGACTGCTTCCTCAGGCATCCTCTCTGCAGATAAGTTAAAGAGTTCGGAGTCAGGACCTGTCGTACCCTCTACCAGTATGGCTGCCCACGCAGTTGACACAGAAGTTGAATTTGAACTGGAGGATAAAAGTGAGACGGTTGAGAATGGTTCTGCTAGAATTGAGGAAGGAGCTGCATATGAGAGAGGACGCTTTTCATTTGACCTTCCTCCACCACCTCCAATCCTTAGAAATAACCATTCGCAGCATGTGGGAGATGATGAGATTATAGACGTGCAGGGAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

289

Amino Acids

32.04

Weight (kDa)

6.25

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	496, 686
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	177, 279, 686, 692
AjiI	CACGTC	1 cut(s)	850
AluBI	AGCT	5 cut(s)	88, 235, 343, 463, 749
AluI	AGCT	5 cut(s)	88, 235, 343, 463, 749
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	4 cut(s)	54, 71, 299, 704
AlwNI	CAGNNNCTG	1 cut(s)	635
ApeKI	GCWGC	5 cut(s)	340, 343, 659, 749, 820
ApoI	RAATTY	2 cut(s)	496, 686
AseI	ATTAAT	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	208, 536, 632
AsuHPI	GGTGA	2 cut(s)	154, 314
AvaII	GGWCC	3 cut(s)	208, 536, 632
AxyI	CCTNAGG	1 cut(s)	589
BbrPI	CACGTG	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	5 cut(s)	330, 352, 646, 736, 832
BccI	CCATC	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	54, 71, 299, 704
BfaI	CTAG	2 cut(s)	447, 732
BfmI	CTRYAG	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	5 cut(s)	341, 344, 660, 750, 821
BlsI	GCNGC	5 cut(s)	342, 345, 661, 751, 822
Bme18I	GGWCC	3 cut(s)	208, 536, 632
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	3 cut(s)	208, 536, 632
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	4 cut(s)	250, 340, 367, 603
BpmI	CTGGAG	1 cut(s)	716
BpuEI	CTTGAG	2 cut(s)	36, 110
BsaAI	YACGTR	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	5 cut(s)	316, 320, 515, 651, 699
Bse21I	CCTNAGG	1 cut(s)	589
BseGI	GGATG	3 cut(s)	382, 418, 594
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	5 cut(s)	316, 320, 515, 651, 699
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	5 cut(s)	330, 352, 646, 736, 832
BsiHKAI	GWGCWC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	4 cut(s)	54, 71, 299, 704
BsmBI	CGTCTC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	200, 229
BspACI	CCGC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	602
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	607
BsrI	ACTGG	5 cut(s)	316, 320, 515, 651, 699
BssMI	GATC	2 cut(s)	200, 229
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	2 cut(s)	36, 264
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	241, 589, 803
BstF5I	GGATG	3 cut(s)	382, 418, 594
BstKTI	GATC	2 cut(s)	203, 232
BstMAI	GTCTC	4 cut(s)	54, 71, 299, 704
BstMBI	GATC	2 cut(s)	200, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	827
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	5 cut(s)	330, 352, 646, 736, 832
Bsu36I	CCTNAGG	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	382
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	3 cut(s)	382, 418, 594
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	208, 536, 632
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	3 cut(s)	347, 566, 824
CviJI	RGCY	9 cut(s)	88, 95, 235, 343, 373, 463, 514, 659, 749
CviKI_1	RGCY	9 cut(s)	88, 95, 235, 343, 373, 463, 514, 659, 749
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	3 cut(s)	241, 589, 803
DpnI	GATC	2 cut(s)	202, 231
DpnII	GATC	2 cut(s)	200, 229
Eam1104I	CTCTTC	2 cut(s)	36, 264
EarI	CTCTTC	2 cut(s)	36, 264
Eco47I	GGWCC	3 cut(s)	208, 536, 632
Eco72I	CACGTG	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	3 cut(s)	350, 569, 827
FatI	CATG	3 cut(s)	346, 565, 823
FauNDI	CATATG	1 cut(s)	754
Fnu4HI	GCNGC	5 cut(s)	341, 344, 660, 750, 821
FokI	GGATG	3 cut(s)	389, 405, 581
Fsp4HI	GCNGC	5 cut(s)	341, 344, 660, 750, 821
FspBI	CTAG	2 cut(s)	447, 732
GluI	GCNGC	5 cut(s)	341, 344, 660, 750, 821
GsuI	CTGGAG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	350, 569, 827
HincII	GTYRAC	2 cut(s)	325, 673
HindII	GTYRAC	2 cut(s)	325, 673
HinfI	GANTC	3 cut(s)	275, 401, 626
HphI	GGTGA	2 cut(s)	154, 314
Hpy166II	GTNNAC	4 cut(s)	34, 325, 520, 673
Hpy188I	TCNGA	3 cut(s)	212, 438, 625
Hpy188III	TCNNGA	2 cut(s)	53, 630
Hpy8I	GTNNAC	4 cut(s)	34, 325, 520, 673
HpyAV	CCTTC	2 cut(s)	737, 791
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	2 cut(s)	36, 849
HpyCH4V	TGCA	4 cut(s)	346, 605, 752, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	3 cut(s)	241, 589, 803
HpySE526I	ACGT	2 cut(s)	36, 849
Hsp92II	CATG	3 cut(s)	350, 569, 827
Kzo9I	GATC	2 cut(s)	200, 229
LmnI	GCTCC	4 cut(s)	85, 474, 511, 746
Lsp1109I	GCAGC	5 cut(s)	330, 352, 646, 736, 832
LweI	GCATC	4 cut(s)	250, 340, 367, 603
MaeI	CTAG	2 cut(s)	447, 732
MaeII	ACGT	2 cut(s)	36, 849
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	202, 231
MboI	GATC	2 cut(s)	200, 229
MboII	GAAGA	2 cut(s)	53, 281
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	7 cut(s)	23, 78, 98, 496, 528, 686, 735
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	235, 446
MseI	TTAA	4 cut(s)	81, 216, 285, 614
MspA1I	CMGCKG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	665
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	2 cut(s)	200, 229
NlaIII	CATG	3 cut(s)	350, 569, 827
NlaIV	GGNNCC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	827
PfeI	GAWTC	2 cut(s)	275, 401
PkrI	GCNGC	5 cut(s)	342, 345, 661, 751, 822
PleI	GAGTC	1 cut(s)	634
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	632
PshBI	ATTAAT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	632
PspCI	CACGTG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	3 cut(s)	208, 536, 632
PspPPI	RGGWCCY	1 cut(s)	632
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SaqAI	TTAA	4 cut(s)	81, 216, 285, 614
SatI	GCNGC	5 cut(s)	341, 344, 660, 750, 821
Sau3AI	GATC	2 cut(s)	200, 229
Sau96I	GGNCC	3 cut(s)	208, 536, 632
SchI	GAGTC	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	4 cut(s)	250, 340, 367, 603
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	3 cut(s)	208, 536, 632
SmlI	CTYRAG	2 cut(s)	51, 89
SmoI	CTYRAG	2 cut(s)	51, 89
Sse9I	AATT	7 cut(s)	23, 78, 98, 496, 528, 686, 735
SsiI	CCGC	1 cut(s)	393
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	447, 732
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	2 cut(s)	39, 852
TasI	AATT	7 cut(s)	23, 78, 98, 496, 528, 686, 735
TfiI	GAWTC	2 cut(s)	275, 401
Tru1I	TTAA	4 cut(s)	81, 216, 285, 614
Tru9I	TTAA	4 cut(s)	81, 216, 285, 614
TscAI	CASTG	1 cut(s)	522
TseI	GCWGC	5 cut(s)	340, 343, 659, 749, 820
TspDTI	ATGAA	2 cut(s)	282, 762
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	3 cut(s)	208, 536, 632
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	2 cut(s)	496, 686
XceI	RCATGY	1 cut(s)	827
XspI	CTAG	2 cut(s)	447, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.