Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Reverse (-)

7667365 .. 7671319

Gene Structure 3955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1105200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAAGGTTATCTATAAGCTCACACATGGGTTTACTATATCTATTTCTTATATAAGACCAGTAGTTTCTACTGTGTACCCCTTGAAACTGGCAAGGATTCAACATTATTGTTCATTATTATGTGGGCGGGACTCTGGAGGCGATGACTTGAGGGATAGACTTGACAGAAGGCATTCTCCGCAGCGAAGTTATTCACCAGAGAGAAATATAAGAGGCCGTCATATACTTCGTGAATATAGTCCATCCAGGTCCCTTGAGAGAGAAAGAAAAAGAAGGAAGAAACACTTGGATGGCCAAAGCGATTTTTCTGGAAGTTTGAGAATCTCAAATGAGGCTGAAGATGAAGCTAAAGAAGCAAATATTAAACTTAGTTCGACGGGTGTTCTTGAGGTGCAGTTAAAGCAATTGCAGTCAGAGATCGACATGCTTGATAACCGTAAATCTCAATTAGGGGTTCACCTGGAAGAGAAGTCTCAAGAAGTGGATAGTCTCACTTCTAAAATTAAGGAGCTTGAGGCTCAATTATACAAAGAGAAGGAGGAATGTAAGAGGATCTCCTACAAGGTGAATAAGTTTGTAAAAGCACATTCTCGTCATTCAAAGATACAAGACCAACTAAAGAGATCACAGGTCCGACTTAATAAGTTGGGAGATCAGCTTGCCTTAGATATTTATGGAACTGATGCCAATGAAGAGGATTCGAGCATTAATATTGTTAGTGATGGTGAGACTACTGGTTTTCCAGTCACCCCCCATAATGAGCAGCTGAATGATGCTTCTCCAAGCAAGAAAAGGCTGGATGCTATTAGGGATACCGCCAAAGAATCAAAACAAAGTGCTCATCCAACAAGAGGACATCTGACAACATCTAGCAGACCAAAGAAGCTCTCTCGGTGGAGCATACACCCTACTCAATCAAATTTTGATAAGGAGGAGCCAGTGAACAATGGAATTGGCGGTCCAAAGGTTTTAGCAAAGGAAGGCAAACATGACAGGAGAAAGACTGCTTCCTCAGGCATCCTCTCTGCAGATAAGTTAAAGAGTTCGGAGTCAGGACCTGTCGTACCCTCTACCAGTATGGCTGCCCACGCAGTTGACACAGAAGTTGAATTTGAACTGGAGGATAAAAGTGAGACAGTTGAGAATGGTTCTGCTAGAATTGAGGAAGGAGCTGCATATGAGAGAGGACGCTTTTCATTTCACCTTCCTCCACCACCTCCAATCCTTAGAAATAACCATTCGCAGTATGAGGGAGATGATGAGATCATAGATGTGCAGGGAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

430

Amino Acids

48.39

Weight (kDa)

8.48

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	127, 179, 816, 957
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	919, 1109
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	77, 1065
AfiI	CCNNNNNNNGG	1 cut(s)	851
AgsI	TTSAA	5 cut(s)	85, 101, 600, 1109, 1115
AjnI	CCWGG	2 cut(s)	245, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	7 cut(s)	19, 347, 511, 658, 766, 886, 1172
AluI	AGCT	7 cut(s)	19, 347, 511, 658, 766, 886, 1172
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	4 cut(s)	477, 494, 722, 1127
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	1058
AoxI	GGCC	2 cut(s)	214, 292
ApeKI	GCWGC	4 cut(s)	181, 763, 1082, 1172
ApoI	RAATTY	2 cut(s)	919, 1109
AseI	ATTAAT	1 cut(s)	708
Asp700I	GAANNNNTTC	2 cut(s)	172, 190
AspS9I	GGNCC	4 cut(s)	249, 631, 959, 1055
AsuHPI	GGTGA	6 cut(s)	186, 449, 577, 737, 739, 1193
AvaII	GGWCC	4 cut(s)	249, 631, 959, 1055
AxyI	CCTNAGG	1 cut(s)	1012
BalI	TGGCCA	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	4 cut(s)	193, 775, 1069, 1159
BccI	CCATC	3 cut(s)	250, 284, 716
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	247, 461
BciVI	GTATCC	1 cut(s)	805
BcoDI	GTCTC	4 cut(s)	477, 494, 722, 1127
BfaI	CTAG	2 cut(s)	870, 1155
BfmI	CTRYAG	1 cut(s)	1026
BfuI	GTATCC	1 cut(s)	805
BisI	GCNGC	4 cut(s)	182, 764, 1083, 1173
BlsI	GCNGC	4 cut(s)	183, 765, 1084, 1174
Bme1390I	CCNGG	2 cut(s)	247, 461
Bme18I	GGWCC	4 cut(s)	249, 631, 959, 1055
BmgT120I	GGNCC	4 cut(s)	249, 631, 959, 1055
BmiI	GGNNCC	2 cut(s)	251, 936
BmrFI	CCNGG	2 cut(s)	247, 461
BmsI	GCATC	4 cut(s)	673, 763, 790, 1026
BpmI	CTGGAG	2 cut(s)	156, 1139
BpuEI	CTTGAG	5 cut(s)	169, 275, 407, 459, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	7 cut(s)	59, 93, 739, 743, 938, 1074, 1122
Bse21I	CCTNAGG	1 cut(s)	1012
BseBI	CCWGG	2 cut(s)	247, 461
BseGI	GGATG	5 cut(s)	242, 295, 805, 841, 1017
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMII	CTCAG	1 cut(s)	1026
BseNI	ACTGG	7 cut(s)	59, 93, 739, 743, 938, 1074, 1122
BseRI	GAGGAG	1 cut(s)	947
BseXI	GCAGC	4 cut(s)	193, 775, 1069, 1159
BsgI	GTGCAG	1 cut(s)	413
BshFI	GGCC	2 cut(s)	216, 294
BsiHKAI	GWGCWC	1 cut(s)	841
BslFI	GGGAC	2 cut(s)	143, 235
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	4 cut(s)	477, 494, 722, 1127
BsmFI	GGGAC	2 cut(s)	143, 235
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	216, 294
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp143I	GATC	5 cut(s)	417, 552, 623, 652, 1263
BspACI	CCGC	4 cut(s)	127, 179, 816, 957
BspANI	GGCC	2 cut(s)	216, 294
BspCNI	CTCAG	1 cut(s)	1025
BspLI	GGNNCC	2 cut(s)	251, 936
BspMAI	CTGCAG	1 cut(s)	1030
BspPI	GGATC	1 cut(s)	560
BsrI	ACTGG	7 cut(s)	59, 93, 739, 743, 938, 1074, 1122
BssMI	GATC	5 cut(s)	417, 552, 623, 652, 1263
Bst2UI	CCWGG	2 cut(s)	247, 461
Bst4CI	ACNGT	3 cut(s)	73, 437, 1138
Bst6I	CTCTTC	2 cut(s)	459, 687
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	4 cut(s)	368, 664, 1012, 1226
BstF5I	GGATG	5 cut(s)	242, 295, 805, 841, 1017
BstKTI	GATC	5 cut(s)	420, 555, 626, 655, 1266
BstMAI	GTCTC	4 cut(s)	477, 494, 722, 1127
BstMBI	GATC	5 cut(s)	417, 552, 623, 652, 1263
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 353, 400, 1088
BstNI	CCWGG	2 cut(s)	247, 461
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	245, 459
BstSFI	CTRYAG	1 cut(s)	1026
BstV1I	GCAGC	4 cut(s)	193, 775, 1069, 1159
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
Bsu36I	CCTNAGG	1 cut(s)	1012
BsuI	GTATCC	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	216, 294
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	5 cut(s)	242, 295, 805, 841, 1017
BtsIMutI	CAGTG	1 cut(s)	945
Cac8I	GCNNGC	1 cut(s)	660
CaiI	CAGNNNCTG	1 cut(s)	1058
Cfr13I	GGNCC	4 cut(s)	249, 631, 959, 1055
CseI	GACGC	1 cut(s)	1197
Csp6I	GTAC	2 cut(s)	76, 1064
CviAII	CATG	3 cut(s)	26, 424, 989
CviQI	GTAC	2 cut(s)	76, 1064
DdeI	CTNAG	4 cut(s)	368, 664, 1012, 1226
DpnI	GATC	5 cut(s)	419, 554, 625, 654, 1265
DpnII	GATC	5 cut(s)	417, 552, 623, 652, 1263
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	459, 687
EarI	CTCTTC	2 cut(s)	459, 687
Eco47I	GGWCC	4 cut(s)	249, 631, 959, 1055
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	1012
EcoO109I	RGGNCCY	2 cut(s)	249, 1055
EcoRII	CCWGG	2 cut(s)	245, 459
FaeI	CATG	3 cut(s)	29, 427, 992
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	2 cut(s)	143, 235
FatI	CATG	3 cut(s)	25, 423, 988
FauI	CCCGC	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	1177
Fnu4HI	GCNGC	4 cut(s)	182, 764, 1083, 1173
FokI	GGATG	5 cut(s)	229, 302, 812, 828, 1004
Fsp4HI	GCNGC	4 cut(s)	182, 764, 1083, 1173
FspBI	CTAG	2 cut(s)	870, 1155
GluI	GCNGC	4 cut(s)	182, 764, 1083, 1173
GsuI	CTGGAG	2 cut(s)	156, 1139
HaeIII	GGCC	2 cut(s)	216, 294
HgaI	GACGC	1 cut(s)	1197
Hin1II	CATG	3 cut(s)	29, 427, 992
HincII	GTYRAC	1 cut(s)	1096
HindII	GTYRAC	1 cut(s)	1096
HinfI	GANTC	6 cut(s)	97, 131, 321, 698, 824, 1049
HphI	GGTGA	6 cut(s)	186, 449, 577, 737, 739, 1193
Hpy166II	GTNNAC	5 cut(s)	33, 76, 457, 943, 1096
Hpy188I	TCNGA	4 cut(s)	415, 635, 861, 1048
Hpy188III	TCNNGA	6 cut(s)	135, 230, 309, 386, 476, 1053
Hpy8I	GTNNAC	5 cut(s)	33, 76, 457, 943, 1096
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	6 cut(s)	162, 267, 529, 974, 1160, 1214
HpyCH4III	ACNGT	3 cut(s)	73, 437, 1138
HpyCH4V	TGCA	5 cut(s)	394, 409, 1028, 1175, 1276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 353, 400, 1088
HpyF3I	CTNAG	4 cut(s)	368, 664, 1012, 1226
Hsp92II	CATG	3 cut(s)	29, 427, 992
Kzo9I	GATC	5 cut(s)	417, 552, 623, 652, 1263
LmnI	GCTCC	4 cut(s)	508, 897, 934, 1169
Lsp1109I	GCAGC	4 cut(s)	193, 775, 1069, 1159
LweI	GCATC	4 cut(s)	673, 763, 790, 1026
MaeI	CTAG	2 cut(s)	870, 1155
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	5 cut(s)	419, 554, 625, 654, 1265
MboI	GATC	5 cut(s)	417, 552, 623, 652, 1263
MboII	GAAGA	4 cut(s)	289, 350, 476, 704
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	1 cut(s)	841
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	8 cut(s)	404, 446, 501, 521, 919, 951, 1109, 1158
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	125, 1058
MmeI	TCCRAC	2 cut(s)	658, 869
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	2 cut(s)	172, 190
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	6 cut(s)	363, 398, 504, 639, 708, 1037
MslI	CAYNNNNRTG	3 cut(s)	118, 288, 1271
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	766
MspR9I	CCNGG	2 cut(s)	247, 461
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	2 cut(s)	247, 461
MwoI	GCNNNNNNNGC	4 cut(s)	178, 353, 400, 1088
NdeI	CATATG	1 cut(s)	1177
NdeII	GATC	5 cut(s)	417, 552, 623, 652, 1263
NlaIII	CATG	3 cut(s)	29, 427, 992
NlaIV	GGNNCC	2 cut(s)	251, 936
NmuCI	GTSAC	1 cut(s)	745
NspI	RCATGY	1 cut(s)	427
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	2 cut(s)	172, 190
PfeI	GAWTC	4 cut(s)	97, 321, 698, 824
PkrI	GCNGC	4 cut(s)	183, 765, 1084, 1174
PleI	GAGTC	2 cut(s)	125, 1057
PpsI	GAGTC	2 cut(s)	125, 1057
PpuMI	RGGWCCY	2 cut(s)	249, 1055
PshBI	ATTAAT	1 cut(s)	708
Psp5II	RGGWCCY	2 cut(s)	249, 1055
Psp6I	CCWGG	2 cut(s)	245, 459
PspGI	CCWGG	2 cut(s)	245, 459
PspN4I	GGNNCC	2 cut(s)	251, 936
PspPI	GGNCC	4 cut(s)	249, 631, 959, 1055
PspPPI	RGGWCCY	2 cut(s)	249, 1055
PstI	CTGCAG	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	766
RsaI	GTAC	2 cut(s)	77, 1065
RsaNI	GTAC	2 cut(s)	76, 1064
RseI	CAYNNNNRTG	3 cut(s)	118, 288, 1271
SaqAI	TTAA	6 cut(s)	363, 398, 504, 639, 708, 1037
SatI	GCNGC	4 cut(s)	182, 764, 1083, 1173
Sau3AI	GATC	5 cut(s)	417, 552, 623, 652, 1263
Sau96I	GGNCC	4 cut(s)	249, 631, 959, 1055
SchI	GAGTC	2 cut(s)	125, 1058
ScrFI	CCNGG	2 cut(s)	247, 461
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	4 cut(s)	673, 763, 790, 1026
SfcI	CTRYAG	1 cut(s)	1026
SinI	GGWCC	4 cut(s)	249, 631, 959, 1055
SmiMI	CAYNNNNRTG	3 cut(s)	118, 288, 1271
SmlI	CTYRAG	5 cut(s)	148, 254, 386, 474, 512
SmoI	CTYRAG	5 cut(s)	148, 254, 386, 474, 512
Sse9I	AATT	8 cut(s)	404, 446, 501, 521, 919, 951, 1109, 1158
SsiI	CCGC	4 cut(s)	127, 179, 816, 957
SspI	AATATT	2 cut(s)	361, 712
SspMI	CTAG	2 cut(s)	870, 1155
StyD4I	CCNGG	2 cut(s)	245, 459
TaaI	ACNGT	3 cut(s)	73, 437, 1138
TaqI	TCGA	3 cut(s)	374, 420, 701
TasI	AATT	8 cut(s)	404, 446, 501, 521, 919, 951, 1109, 1158
TfiI	GAWTC	4 cut(s)	97, 321, 698, 824
Tru1I	TTAA	6 cut(s)	363, 398, 504, 639, 708, 1037
Tru9I	TTAA	6 cut(s)	363, 398, 504, 639, 708, 1037
TscAI	CASTG	1 cut(s)	945
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	4 cut(s)	181, 763, 1082, 1172
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	5 cut(s)	17, 102, 357, 705, 1185
TspRI	CASTG	1 cut(s)	945
VpaK11BI	GGWCC	4 cut(s)	249, 631, 959, 1055
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	2 cut(s)	919, 1109
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	2 cut(s)	172, 190
XspI	CTAG	2 cut(s)	870, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.