Rorug02G0480000

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002392
Physical Location & Seq
Reverse (-)
61082247 .. 61085749
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0480000.1

Sequence Viewer

Length: 840 bp
ATGCTTCGACTCAGTCTCCTCCCATTTCATCGTTTTCCAATCTCTTCCCATTTCCTCAATCTCTCTCCCAAGTCCACAATGGCCGTCTCTGCTTCTTACACGACGTCGTCACACTCCTCCTCCAAGCTTCTGTTCCGTCAGCTCTTCGAGAAGGAGTCCTCCACCTACACTTACCTCCTCGCCGACGTGTCCCACCCCGATAAACCCGCCCTGTTGATTGATCCTGTGGACAAAACAGTGGATAGGGATCTTTCCCTTGTTAAAGAGTTGGGTTTGAAGCTGGTTTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGTCTCATCAAGAGTAAGCTGGATGGTGTGAAATCTGTGATTTCAAGGGCAAGCAAGTCAAAAGCTGATCATCTGATTGAAGCTGGTGATAAAATCTATTTTGGAGACATGTTTTTGGAGGTTCGAGCTACTCCTGGACATACGTTGGGCTGTGTCACCTATGTTACAGGTGATGGGCCTAATCAGCCTCAACCAAGGATGGCTTTCACTGGAGATGCTCTACTCATACGTGGATGTGGGCGAACTGATTTTCAGGGTGGCAGCTCAGATCAACTCTATGAGTCAGTCCATTCACAGATTTTCACATTGCCAAAGGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAGATATCATGAAAAATCTAAAACTCGCATATCCCAAAATGATTGACATAGCTGTGCCTGCAAATATGGTTTGTGGATTGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

279

Amino Acids

30.83

Weight (kDa)

7.18

Isoelectric Point (pI)

24.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 55 - 223 5e-11 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 107
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 215, 255
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 104
AflIII ACRYGT 2 cut(s) 186, 438
AgsI TTSAA 4 cut(s) 277, 375, 410, 752
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 9 cut(s) 127, 142, 280, 349, 395, 413, 458, 594, 803
AluI AGCT 9 cut(s) 127, 142, 280, 349, 395, 413, 458, 594, 803
Alw26I GTCTC 4 cut(s) 20, 91, 338, 429
AlwI GGATC 2 cut(s) 215, 255
AoxI GGCC 2 cut(s) 81, 506
ApeKI GCWGC 1 cut(s) 591
AseI ATTAAT 1 cut(s) 653
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 724
AsuHPI GGTGA 3 cut(s) 428, 478, 512
BbvI GCAGC 1 cut(s) 603
BccI CCATC 3 cut(s) 347, 497, 523
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 2 cut(s) 313, 397
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 4 cut(s) 20, 91, 338, 429
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 1 cut(s) 592
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 2 cut(s) 465, 724
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 506
BmrFI CCNGG 2 cut(s) 465, 724
BmsI GCATC 2 cut(s) 535, 699
BpmI CTGGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 724
BsaAI YACGTR 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 524, 696, 722
BsaXI ACNNNNNCTCC 3 cut(s) 30, 104, 134
Bse1I ACTGG 3 cut(s) 328, 334, 544
Bse3DI GCAATG 1 cut(s) 635
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 524, 696, 722
BseGI GGATG 3 cut(s) 358, 534, 569
BseJI GATNNNNATC 1 cut(s) 246
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 2 cut(s) 25, 609
BseNI ACTGG 3 cut(s) 328, 334, 544
BseRI GAGGAG 5 cut(s) 8, 106, 109, 167, 719
BseXI GCAGC 1 cut(s) 603
BshFI GGCC 2 cut(s) 83, 508
BsiSI CCGG 1 cut(s) 724
BslFI GGGAC 1 cut(s) 175
BsmAI GTCTC 4 cut(s) 20, 91, 338, 429
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 83, 508
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 5 cut(s) 220, 247, 313, 397, 598
BspACI CCGC 1 cut(s) 207
BspANI GGCC 2 cut(s) 83, 508
BspCNI CTCAG 2 cut(s) 24, 608
BspHI TCATGA 2 cut(s) 667, 759
BspPI GGATC 2 cut(s) 215, 255
BspQI GCTCTTC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 635
BsrI ACTGG 3 cut(s) 328, 334, 544
BssECI CCNNGG 3 cut(s) 524, 696, 722
BssMI GATC 5 cut(s) 220, 247, 313, 397, 598
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 238, 688, 697
Bst6I CTCTTC 2 cut(s) 49, 149
BstACI GRCGYC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 382, 810
BstDEI CTNAG 2 cut(s) 11, 595
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 3 cut(s) 358, 534, 569
BstKTI GATC 5 cut(s) 223, 250, 316, 400, 601
BstMAI GTCTC 4 cut(s) 20, 91, 338, 429
BstMBI GATC 5 cut(s) 220, 247, 313, 397, 598
BstMWI GCNNNNNNNGC 3 cut(s) 89, 514, 809
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 463, 722
BstV1I GCAGC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 83, 508
BtgI CCRYGG 1 cut(s) 696
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 358, 534, 569
BtsIMutI CAGTG 5 cut(s) 243, 321, 327, 537, 684
Cac8I GCNNGC 2 cut(s) 382, 810
CciI TCATGA 2 cut(s) 667, 759
Cfr13I GGNCC 1 cut(s) 506
CviAII CATG 6 cut(s) 302, 308, 317, 439, 668, 760
DdeI CTNAG 2 cut(s) 11, 595
DpnI GATC 5 cut(s) 222, 249, 315, 399, 600
DpnII GATC 5 cut(s) 220, 247, 313, 397, 598
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 49, 149
EarI CTCTTC 2 cut(s) 49, 149
Eco130I CCWWGG 1 cut(s) 524
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 6 cut(s) 305, 311, 320, 442, 671, 763
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 1 cut(s) 175
FatI CATG 6 cut(s) 301, 307, 316, 438, 667, 759
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 2 cut(s) 313, 397
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 3 cut(s) 365, 541, 576
Fsp4HI GCNGC 1 cut(s) 592
GluI GCNGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 83, 508
HapII CCGG 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 6 cut(s) 305, 311, 320, 442, 671, 763
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 9, 155, 611, 681
HpaII CCGG 1 cut(s) 724
HphI GGTGA 3 cut(s) 428, 478, 512
Hpy166II GTNNAC 2 cut(s) 75, 229
Hpy188I TCNGA 2 cut(s) 405, 598
Hpy188III TCNNGA 4 cut(s) 148, 340, 668, 760
Hpy8I GTNNAC 2 cut(s) 75, 229
Hpy99I CGWCG 3 cut(s) 106, 109, 188
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 238, 688, 697
HpyCH4IV ACGT 4 cut(s) 104, 186, 473, 559
HpyCH4V TGCA 2 cut(s) 812, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 514, 809
HpyF3I CTNAG 2 cut(s) 11, 595
HpySE526I ACGT 4 cut(s) 104, 186, 473, 559
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 6 cut(s) 305, 311, 320, 442, 671, 763
Ksp22I TGATCA 2 cut(s) 313, 397
Kzo9I GATC 5 cut(s) 220, 247, 313, 397, 598
LguI GCTCTTC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 2 cut(s) 535, 699
MaeII ACGT 4 cut(s) 104, 186, 473, 559
MaeIII GTNAC 4 cut(s) 108, 319, 484, 493
MalI GATC 5 cut(s) 222, 249, 315, 399, 600
MboI GATC 5 cut(s) 220, 247, 313, 397, 598
MboII GAAGA 3 cut(s) 36, 136, 764
MflI RGATCY 1 cut(s) 247
MlyI GAGTC 3 cut(s) 3, 164, 620
MseI TTAA 2 cut(s) 261, 653
MslI CAYNNNNRTG 2 cut(s) 306, 803
MspI CCGG 1 cut(s) 724
MspR9I CCNGG 2 cut(s) 465, 724
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 89, 514, 809
NciI CCSGG 1 cut(s) 724
NdeII GATC 5 cut(s) 220, 247, 313, 397, 598
NlaIII CATG 6 cut(s) 305, 311, 320, 442, 671, 763
NmuCI GTSAC 3 cut(s) 108, 319, 484
NspI RCATGY 1 cut(s) 442
PagI TCATGA 2 cut(s) 667, 759
PciI ACATGT 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 681
PflFI GACNNNGTC 2 cut(s) 12, 106
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 1 cut(s) 593
PleI GAGTC 3 cut(s) 3, 163, 619
PpsI GAGTC 3 cut(s) 3, 163, 619
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 1 cut(s) 438
PshBI ATTAAT 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 247
PsyI GACNNNGTC 2 cut(s) 12, 106
RseI CAYNNNNRTG 2 cut(s) 306, 803
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 261, 653
SatI GCNGC 1 cut(s) 592
Sau3AI GATC 5 cut(s) 220, 247, 313, 397, 598
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 3 cut(s) 3, 164, 620
ScrFI CCNGG 2 cut(s) 465, 724
SfaNI GCATC 2 cut(s) 535, 699
SmiMI CAYNNNNRTG 2 cut(s) 306, 803
SsiI CCGC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 463, 722
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 3 cut(s) 238, 688, 697
TaiI ACGT 4 cut(s) 107, 189, 476, 562
TaqI TCGA 3 cut(s) 7, 147, 454
TfiI GAWTC 1 cut(s) 681
Tru1I TTAA 2 cut(s) 261, 653
Tru9I TTAA 2 cut(s) 261, 653
TscAI CASTG 5 cut(s) 243, 328, 334, 544, 691
TseFI GTSAC 3 cut(s) 108, 319, 484
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 3 cut(s) 108, 319, 484
TspDTI ATGAA 4 cut(s) 17, 296, 308, 776
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 5 cut(s) 243, 328, 334, 544, 691
Tth111I GACNNNGTC 2 cut(s) 12, 106
VspI ATTAAT 1 cut(s) 653
XceI RCATGY 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.