Rorug01G0120500

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002392
Physical Location & Seq
Reverse (-)
21039933 .. 21043021
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0120500.1

Sequence Viewer

Length: 1464 bp
ATGAGCAGCGAGAGAACGACGCCGCTTTCAGTGCGGGTAGGCTACAGGTTCCATCCCACCGAAGAGGAGCTGGTGAACCATTATTTGAAGAAGAAGATTCATGGCGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTTCCTGCATTGTTGGGGACTGAGACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAGGGCTTATAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACCAAGAAGGGATACTGGAAGATCACAGGGAAGGAGCGTGGAATTAAAGCTCGACGATCAAAAGCTGTGATTGGGATGAAGAAGACATTGACTTTTTACCAGGGTCGTGTGCCGAAATCGAAGAAGACCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAAATGGAGTTATTAAGCAGGCCCAGGGCGACTTTGTTATCTGTCGCTTGAAGATTAGATCAGATAAGATGGATTCTTCAGTCAGTAATGAAGGAGAACCCGGTAGCGTGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCGGTCACCGGTGTCCCAAAAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTACAATCACCATTTGGAGATAGTGATTCTTGTCTATTAGACGGGAATGAAGTTTCAACCTGTGATGAAAATGAGGCTGTGTATGATGTGTTTCCACAGCTACGTGATCTGTCAGAACAAAATCTGGATTCACTCTTTGGTCCACATCAGCCACAAGAATACTGCCCTGCCATACTGCAACAGTCACCAATATACACAAAGCTGGGAGATGTTCCACATCCACTTCAGCCACAAGATTACGAGCCCTCAAAGTTTCAATCACCAATATACACAAAGCTGGGAAATGTTCCGCATCCACTTCAGCCACAAGATTACCAGCCCTCAAAGTTGCAGTTACCAATATACACAAAGTTGGGAAATGTTCCAGATGCCAATCTCTATTGTGGTGAATGCAATAATTGGCAATCTGCAATTAAAAAAAATGTTTCAACCGATGAAGTTGGCATATCAGTTAGACAAATCATGTCTAATTTTGAAAATCAAGCTACAGATTTTAAGATTCCAGAGGTGAGAATGGTGCATCATCCTCAAACCAAAGAAAATCTGGAATCAGTGGTTTATCCATTCCAGCCACAAAATTTCACGTCGCAGCCACTGATGTACACAGAATTTGGAGATGCTTTACATAATACTGAAAGCAATGAGTTGCAATCTTCATTTGGGGATAATGACTCTTCTCTCACAAAGTTCTTGAATACAAATTTTGCTTACCAGGATTGTTACTCGGTTGATCAAACAGCAGACTCCTTTCAAAGACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

487

Amino Acids

55.35

Weight (kDa)

5.3

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 143 1e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 655
AciI CCGC 5 cut(s) 23, 34, 105, 634, 992
AcsI RAATTY 3 cut(s) 1279, 1310, 1402
AcuI CTGAAG 3 cut(s) 498, 911, 986
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 3 cut(s) 248, 425, 1304
AfiI CCNNNNNNNGG 2 cut(s) 440, 655
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 8 cut(s) 88, 487, 759, 959, 1131, 1178, 1396, 1454
AjiI CACGTC 1 cut(s) 1287
AjnI CCWGG 4 cut(s) 375, 433, 459, 1413
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 188
AlwNI CAGNNNCTG 2 cut(s) 607, 1297
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 6, 618, 1291
ApoI RAATTY 3 cut(s) 1279, 1310, 1402
AsiGI ACCGGT 1 cut(s) 640
Asp700I GAANNNNTTC 2 cut(s) 112, 663
AspS9I GGNCC 2 cut(s) 457, 842
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 8 cut(s) 85, 220, 630, 702, 879, 954, 1100, 1222
AvaII GGWCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 948
BbsI GAAGAC 2 cut(s) 365, 407
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 2 cut(s) 600, 625
BbvI GCAGC 3 cut(s) 18, 605, 1303
BccI CCATC 3 cut(s) 60, 499, 600
BciT130I CCWGG 4 cut(s) 377, 435, 461, 1415
BciVI GTATCC 1 cut(s) 281
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 43, 1188
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 4 cut(s) 7, 23, 619, 1292
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 4 cut(s) 8, 24, 620, 1293
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 5 cut(s) 377, 435, 461, 537, 1415
Bme18I GGWCC 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 1287
BmgT120I GGNCC 2 cut(s) 457, 842
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 5 cut(s) 377, 435, 461, 537, 1415
BmsI GCATC 4 cut(s) 1003, 1060, 1231, 1309
BpiI GAAGAC 2 cut(s) 365, 407
Bpu10I CCTNAGC 2 cut(s) 600, 625
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 1074
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 376, 459, 460
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 655
Bse118I RCCGGY 2 cut(s) 163, 640
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 1348
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 4 cut(s) 377, 435, 461, 1415
BseDI CCNNGG 3 cut(s) 376, 459, 460
BseGI GGATG 7 cut(s) 52, 132, 357, 616, 919, 994, 1225
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 2 cut(s) 440, 655
BseMI GCAATG 1 cut(s) 1348
BseMII CTCAG 4 cut(s) 159, 183, 614, 639
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 80, 593, 613
BseXI GCAGC 3 cut(s) 18, 605, 1303
BseYI CCCAGC 3 cut(s) 408, 904, 979
BshFI GGCC 1 cut(s) 458
BshTI ACCGGT 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 3 cut(s) 164, 537, 641
BslFI GGGAC 2 cut(s) 202, 631
BslI CCNNNNNNNGG 2 cut(s) 440, 655
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 202, 631
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 278, 948
Bsp1407I TGTACA 1 cut(s) 1302
Bsp143I GATC 5 cut(s) 297, 332, 494, 808, 1432
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 5 cut(s) 23, 34, 105, 634, 992
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 4 cut(s) 160, 184, 613, 638
BspHI TCATGA 2 cut(s) 205, 418
BspLI GGNNCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 1348
BsrFI RCCGGY 2 cut(s) 163, 640
BsrGI TGTACA 1 cut(s) 1302
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 2 cut(s) 163, 640
BssECI CCNNGG 3 cut(s) 376, 459, 460
BssMI GATC 5 cut(s) 297, 332, 494, 808, 1432
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 4 cut(s) 377, 435, 461, 1415
Bst4CI ACNGT 1 cut(s) 885
Bst6I CTCTTC 2 cut(s) 57, 1381
BstACI GRCGYC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 1302
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 165, 456
BstDEI CTNAG 4 cut(s) 168, 192, 600, 625
BstEII GGTNACC 1 cut(s) 636
BstF5I GGATG 7 cut(s) 52, 132, 357, 616, 919, 994, 1225
BstKTI GATC 5 cut(s) 300, 335, 497, 811, 1435
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 5 cut(s) 297, 332, 494, 808, 1432
BstMWI GCNNNNNNNGC 2 cut(s) 31, 169
BstNI CCWGG 4 cut(s) 377, 435, 461, 1415
BstPI GGTNACC 1 cut(s) 636
BstSCI CCNGG 5 cut(s) 375, 433, 459, 535, 1413
BstSFI CTRYAG 2 cut(s) 43, 1188
BstV1I GCAGC 3 cut(s) 18, 605, 1303
BstV2I GAAGAC 2 cut(s) 365, 407
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 458
BtrI CACGTC 1 cut(s) 1287
BtsCI GGATG 7 cut(s) 52, 132, 357, 616, 919, 994, 1225
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 4 cut(s) 36, 629, 1260, 1295
Cac8I GCNNGC 2 cut(s) 165, 456
CaiI CAGNNNCTG 2 cut(s) 607, 1297
CciI TCATGA 2 cut(s) 205, 418
Cfr10I RCCGGY 2 cut(s) 163, 640
Cfr13I GGNCC 2 cut(s) 457, 842
CseI GACGC 1 cut(s) 28
Csp6I GTAC 3 cut(s) 247, 424, 1303
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 5 cut(s) 101, 206, 211, 419, 1165
CviQI GTAC 3 cut(s) 247, 424, 1303
DdeI CTNAG 4 cut(s) 168, 192, 600, 625
DpnI GATC 5 cut(s) 299, 334, 496, 810, 1434
DpnII GATC 5 cut(s) 297, 332, 494, 808, 1432
Eam1104I CTCTTC 2 cut(s) 57, 1381
EarI CTCTTC 2 cut(s) 57, 1381
EciI GGCGGA 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 948
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 3 cut(s) 498, 911, 986
Eco91I GGTNACC 1 cut(s) 636
EcoO65I GGTNACC 1 cut(s) 636
EcoRII CCWGG 4 cut(s) 375, 433, 459, 1413
EcoT38I GRGCYC 1 cut(s) 948
FaeI CATG 5 cut(s) 104, 209, 214, 422, 1168
FaqI GGGAC 2 cut(s) 202, 631
FatI CATG 5 cut(s) 100, 205, 210, 418, 1164
FauI CCCGC 1 cut(s) 27
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 4 cut(s) 7, 23, 619, 1292
FokI GGATG 7 cut(s) 39, 119, 364, 623, 906, 981, 1212
FriOI GRGCYC 1 cut(s) 948
Fsp4HI GCNGC 4 cut(s) 7, 23, 619, 1292
GluI GCNGC 4 cut(s) 7, 23, 619, 1292
GsaI CCCAGC 3 cut(s) 412, 908, 983
HaeIII GGCC 1 cut(s) 458
HapII CCGG 3 cut(s) 164, 537, 641
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 5 cut(s) 104, 209, 214, 422, 1168
HpaII CCGG 3 cut(s) 164, 537, 641
HphI GGTGA 8 cut(s) 85, 220, 630, 702, 879, 954, 1100, 1222
Hpy166II GTNNAC 3 cut(s) 76, 845, 1305
Hpy188I TCNGA 5 cut(s) 118, 273, 499, 556, 817
Hpy188III TCNNGA 9 cut(s) 206, 419, 566, 608, 827, 1067, 1205, 1247, 1393
Hpy8I GTNNAC 3 cut(s) 76, 845, 1305
Hpy99I CGWCG 3 cut(s) 22, 333, 1291
HpyAV CCTTC 4 cut(s) 228, 277, 301, 521
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 2 cut(s) 805, 1286
HpyCH4V TGCA 9 cut(s) 153, 179, 670, 880, 1033, 1095, 1112, 1222, 1351
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 169
HpyF3I CTNAG 4 cut(s) 168, 192, 600, 625
HpySE526I ACGT 2 cut(s) 805, 1286
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 5 cut(s) 104, 209, 214, 422, 1168
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 5 cut(s) 297, 332, 494, 808, 1432
LmnI GCTCC 4 cut(s) 67, 273, 310, 626
Lsp1109I GCAGC 3 cut(s) 18, 605, 1303
LweI GCATC 4 cut(s) 1003, 1060, 1231, 1309
MaeII ACGT 2 cut(s) 805, 1286
MaeIII GTNAC 6 cut(s) 636, 679, 702, 885, 1035, 1421
MalI GATC 5 cut(s) 299, 334, 496, 810, 1434
MboI GATC 5 cut(s) 297, 332, 494, 808, 1432
MhlI GDGCHC 2 cut(s) 278, 948
MluCI AATT 7 cut(s) 318, 1099, 1113, 1171, 1279, 1310, 1402
MlyI GAGTC 3 cut(s) 1367, 1439, 1452
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 112, 663
MseI TTAA 4 cut(s) 321, 450, 1116, 1197
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 3 cut(s) 164, 537, 641
MspR9I CCNGG 5 cut(s) 377, 435, 461, 537, 1415
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 4 cut(s) 377, 435, 461, 1415
MwoI GCNNNNNNNGC 2 cut(s) 31, 169
NaeI GCCGGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 537
NdeII GATC 5 cut(s) 297, 332, 494, 808, 1432
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 5 cut(s) 104, 209, 214, 422, 1168
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 3 cut(s) 636, 679, 885
PagI TCATGA 2 cut(s) 205, 418
PasI CCCWGGG 1 cut(s) 460
PctI GAATGC 1 cut(s) 1097
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 112, 663
PfeI GAWTC 9 cut(s) 97, 113, 268, 509, 562, 728, 830, 1201, 1250
PflMI CCANNNNNTGG 1 cut(s) 655
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 4 cut(s) 8, 24, 620, 1293
PleI GAGTC 3 cut(s) 1367, 1439, 1452
PpsI GAGTC 3 cut(s) 1367, 1439, 1452
Ppu21I YACGTR 1 cut(s) 806
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 4 cut(s) 375, 433, 459, 1413
PspEI GGTNACC 1 cut(s) 636
PspFI CCCAGC 3 cut(s) 408, 904, 979
PspGI CCWGG 4 cut(s) 375, 433, 459, 1413
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 457, 842
PstNI CAGNNNCTG 2 cut(s) 607, 1297
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 3 cut(s) 248, 425, 1304
RsaNI GTAC 3 cut(s) 247, 424, 1303
SaqAI TTAA 4 cut(s) 321, 450, 1116, 1197
SatI GCNGC 4 cut(s) 7, 23, 619, 1292
Sau3AI GATC 5 cut(s) 297, 332, 494, 808, 1432
Sau96I GGNCC 2 cut(s) 457, 842
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 3 cut(s) 1367, 1439, 1452
ScrFI CCNGG 5 cut(s) 377, 435, 461, 537, 1415
SduI GDGCHC 2 cut(s) 278, 948
SfaNI GCATC 4 cut(s) 1003, 1060, 1231, 1309
SfcI CTRYAG 2 cut(s) 43, 1188
SgrAI CRCCGGYG 1 cut(s) 640
SinI GGWCC 1 cut(s) 842
Sse9I AATT 7 cut(s) 318, 1099, 1113, 1171, 1279, 1310, 1402
SsiI CCGC 5 cut(s) 23, 34, 105, 634, 992
StyD4I CCNGG 5 cut(s) 375, 433, 459, 535, 1413
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 2 cut(s) 808, 1289
TaqI TCGA 4 cut(s) 144, 266, 328, 395
TasI AATT 7 cut(s) 318, 1099, 1113, 1171, 1279, 1310, 1402
TatI WGTACW 3 cut(s) 246, 423, 1302
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 9 cut(s) 97, 113, 268, 509, 562, 728, 830, 1201, 1250
Tru1I TTAA 4 cut(s) 321, 450, 1116, 1197
Tru9I TTAA 4 cut(s) 321, 450, 1116, 1197
TscAI CASTG 4 cut(s) 36, 636, 1260, 1302
TseFI GTSAC 3 cut(s) 636, 679, 885
TseI GCWGC 3 cut(s) 6, 618, 1291
Tsp45I GTSAC 3 cut(s) 636, 679, 885
TspDTI ATGAA 9 cut(s) 89, 368, 407, 540, 575, 765, 783, 1152, 1347
TspRI CASTG 4 cut(s) 36, 636, 1260, 1302
Van91I CCANNNNNTGG 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 3 cut(s) 1279, 1310, 1402
XcmI CCANNNNNNNNNTGG 1 cut(s) 1243
XmnI GAANNNNTTC 2 cut(s) 112, 663
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.