Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

22096045 .. 22101919

Gene Structure 5875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G220100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTGGAGAGGAAGCTTTTCAAGACGAAGCTGTGTGTTTTGTATCAGAGAGGGCGATGTGCGCGCGAAAGTTGCTCCTTTGCTCACGGACAAGCGGAGCTCCGTCGTTTCTCGGGCTCCTTTGACGGTAGGCGGGACTCTGGAGGTGATGATTTGAGGGATAAGCTTGAGAGAAGGTATTCTCCACGGGGAAGGTATTCACCACAGAGAGATGCAAGAGGCCGACATGTACTTCGTGCAGAACATAGTCCATCCAGGTCCCTTGAGAGAGAAAATTTTGAATATTCCTTCGGTAACAGCAAACGAAGGAAGAAACAACACTTGGATGGCCAAAGTGATATTTCTGGAAGTTTGAGAATTTCAAATGAGACTGAACATGAAGCTAAAGAAGCAAATTCCAGAGGTGTTCTTGAGGAGCAGTTAAAGCAATTGCAGTCAGAGATCAACATGCTTGATCACCGCAGATCTCAATTAGGGGTCTACCTGGAAGAGAAGTCTCAAGAAGTGGATAGTCTTACTTCTAAAATTAAGGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGACTGTAAGAGGATCTCCTCCAAAGTGAAGAAGTTTGTAAAAGCACATTCTCGTAATTCAAGGATACAAGATCAACTAAAGAGATCACAGGTCCGACTTAATAAGTTGGGAGATCAGCTTGCCTTAGATATTTATGGAAATGATGTCAATGAAGAGGATTCGAGCATTAATATTGTTAGTGATGGTGATGGTGAGACTACTGGTTTTCCAGTAACCCCACATAATGAGCGGCTGAATGATGCTTCTCCAAGCAAGATGAGGCTGGAAGCTATTAGGGATTATGCCAAAGAATCAAAACAAAGTGCTCATTCAACAAGAGGACATCTGACCACATCAAGCAGACCAAAGAAGCTCTCTCGGTGGAACATACACCCTGCTCAATCAAATTTTGACAAAAAAAATGAGGCAGTGAGCAATACAACTGGCAGTCCAAAGCAATTAGCAAACGAAGGCAAGCATGATAGGAGAAAAACTGCTTCCTCTAGCATCCTCTCTGCAGATATGTTGAAGATTTCGGAGTCAGCCCCTGTTGTACCCTCAACTAGCATGGCGGCTCACCCAGTTGACACAGAAGTTGAAATTGAACCAGAGGATAAAATTGAGATGGTTGGGAAAGCTTCTGGTAAAATTGAGGAAGGAGCTGCATATGAGAACGTGAGCTTTTCATTACCACTTCCTCCACCTCCAATCCCTAAAATTAACTACTCACAGTATGAGGGGGATGATGAGATTATAGATGTGCAGGGAGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

440

Amino Acids

49.55

Weight (kDa)

8.62

Isoelectric Point (pI)

61.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	2 cut(s)	64, 66
AciI	CCGC	5 cut(s)	95, 133, 460, 793, 1115
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	4 cut(s)	274, 357, 394, 949
AfaI	GTAC	2 cut(s)	231, 1098
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	8 cut(s)	22, 281, 363, 624, 876, 1072, 1142, 1148
AjnI	CCWGG	2 cut(s)	254, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
Alw21I	GWGCWC	2 cut(s)	102, 871
Alw26I	GTCTC	3 cut(s)	362, 501, 752
AlwI	GGATC	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	1091
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	220, 328
ApeKI	GCWGC	1 cut(s)	1205
ApoI	RAATTY	4 cut(s)	274, 357, 394, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AseI	ATTAAT	1 cut(s)	732
Asp700I	GAANNNNTTC	3 cut(s)	17, 178, 196
AspLEI	GCGC	2 cut(s)	64, 66
AspS9I	GGNCC	2 cut(s)	258, 655
AsuHPI	GGTGA	6 cut(s)	158, 192, 449, 761, 767, 1112
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	258, 655
BalI	TGGCCA	1 cut(s)	330
BanII	GRGCYC	2 cut(s)	102, 119
Bbv12I	GWGCWC	2 cut(s)	102, 871
BbvI	GCAGC	1 cut(s)	1192
BccI	CCATC	5 cut(s)	259, 320, 740, 746, 1162
BciT130I	CCWGG	2 cut(s)	256, 485
BciVI	GTATCC	1 cut(s)	621
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	362, 501, 752
BfaI	CTAG	3 cut(s)	1047, 1107, 1318
BfmI	CTRYAG	1 cut(s)	1059
BfuI	GTATCC	1 cut(s)	621
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	3 cut(s)	794, 1116, 1206
BlsI	GCNGC	3 cut(s)	795, 1117, 1207
Bme1390I	CCNGG	2 cut(s)	256, 485
Bme18I	GGWCC	2 cut(s)	258, 655
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	258, 655
BmiI	GGNNCC	2 cut(s)	118, 260
BmrFI	CCNGG	2 cut(s)	256, 485
BmrI	ACTGGG	1 cut(s)	1118
BmsI	GCATC	3 cut(s)	202, 793, 1059
BmuI	ACTGGG	1 cut(s)	1118
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	5 cut(s)	188, 284, 431, 483, 557
BsaJI	CCNNGG	1 cut(s)	185
Bse1I	ACTGG	4 cut(s)	769, 773, 991, 1124
BseBI	CCWGG	2 cut(s)	256, 485
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	4 cut(s)	251, 331, 1050, 1291
BseNI	ACTGG	4 cut(s)	769, 773, 991, 1124
BsePI	GCGCGC	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	428, 571
BseXI	GCAGC	1 cut(s)	1192
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	2 cut(s)	64, 66
BshFI	GGCC	2 cut(s)	222, 330
BsiHKAI	GWGCWC	2 cut(s)	102, 871
BsiHKCI	CYCGRG	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	149, 244
BsmAI	GTCTC	3 cut(s)	362, 501, 752
BsmFI	GGGAC	2 cut(s)	149, 244
BsnI	GGCC	2 cut(s)	222, 330
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	102, 119, 871
Bsp143I	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
BspACI	CCGC	5 cut(s)	95, 133, 460, 793, 1115
BspANI	GGCC	2 cut(s)	222, 330
BspFNI	CGCG	2 cut(s)	64, 66
BspLI	GGNNCC	2 cut(s)	118, 260
BspMAI	CTGCAG	1 cut(s)	1063
BspPI	GGATC	1 cut(s)	584
BsrBI	CCGCTC	1 cut(s)	793
BsrI	ACTGG	4 cut(s)	769, 773, 991, 1124
BssECI	CCNNGG	1 cut(s)	185
BssHII	GCGCGC	1 cut(s)	62
BssMI	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
Bst2UI	CCWGG	2 cut(s)	256, 485
Bst4CI	ACNGT	3 cut(s)	128, 569, 1275
Bst6I	CTCTTC	2 cut(s)	483, 711
BstC8I	GCNNGC	3 cut(s)	64, 684, 1019
BstDEI	CTNAG	1 cut(s)	688
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	4 cut(s)	251, 331, 1050, 1291
BstFNI	CGCG	2 cut(s)	64, 66
BstHHI	GCGC	2 cut(s)	64, 66
BstKTI	GATC	7 cut(s)	444, 457, 467, 579, 637, 650, 679
BstMAI	GTCTC	3 cut(s)	362, 501, 752
BstMBI	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 72, 389, 424
BstNI	CCWGG	2 cut(s)	256, 485
BstNSI	RCATGY	2 cut(s)	230, 451
BstSCI	CCNGG	2 cut(s)	254, 483
BstSFI	CTRYAG	1 cut(s)	1059
BstUI	CGCG	2 cut(s)	64, 66
BstV1I	GCAGC	1 cut(s)	1192
BstX2I	RGATCY	2 cut(s)	464, 576
BstYI	RGATCY	2 cut(s)	464, 576
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	222, 330
BtgI	CCRYGG	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	251, 331, 1050, 1291
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	1 cut(s)	978
Cac8I	GCNNGC	3 cut(s)	64, 684, 1019
CaiI	CAGNNNCTG	1 cut(s)	1091
CfoI	GCGC	2 cut(s)	64, 66
Cfr13I	GGNCC	2 cut(s)	258, 655
Csp6I	GTAC	2 cut(s)	230, 1097
CviAII	CATG	5 cut(s)	227, 377, 448, 1022, 1111
CviQI	GTAC	2 cut(s)	230, 1097
DdeI	CTNAG	1 cut(s)	688
DpnI	GATC	7 cut(s)	443, 456, 466, 578, 636, 649, 678
DpnII	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	483, 711
EarI	CTCTTC	2 cut(s)	483, 711
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	102, 119
Eco47I	GGWCC	2 cut(s)	258, 655
Eco53kI	GAGCTC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	254, 483
EcoT38I	GRGCYC	2 cut(s)	102, 119
FaeI	CATG	5 cut(s)	230, 380, 451, 1025, 1114
FaqI	GGGAC	2 cut(s)	149, 244
FatI	CATG	5 cut(s)	226, 376, 447, 1021, 1110
FauI	CCCGC	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	1210
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	794, 1116, 1206
FokI	GGATG	4 cut(s)	238, 338, 1037, 1298
FriOI	GRGCYC	2 cut(s)	102, 119
Fsp4HI	GCNGC	3 cut(s)	794, 1116, 1206
FspBI	CTAG	3 cut(s)	1047, 1107, 1318
GlaI	GCGC	2 cut(s)	63, 65
GluI	GCNGC	3 cut(s)	794, 1116, 1206
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	222, 330
HhaI	GCGC	2 cut(s)	64, 66
Hin1II	CATG	5 cut(s)	230, 380, 451, 1025, 1114
Hin6I	GCGC	2 cut(s)	62, 64
HinP1I	GCGC	2 cut(s)	62, 64
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HindIII	AAGCTT	3 cut(s)	14, 164, 1179
HinfI	GANTC	4 cut(s)	137, 722, 854, 1082
HphI	GGTGA	6 cut(s)	158, 192, 449, 761, 767, 1112
Hpy166II	GTNNAC	2 cut(s)	481, 1129
Hpy188I	TCNGA	5 cut(s)	48, 439, 659, 891, 1081
Hpy188III	TCNNGA	6 cut(s)	22, 141, 345, 399, 410, 500
Hpy8I	GTNNAC	2 cut(s)	481, 1129
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	6 cut(s)	168, 186, 298, 300, 1007, 1193
HpyCH4III	ACNGT	3 cut(s)	128, 569, 1275
HpyCH4IV	ACGT	1 cut(s)	1218
HpyCH4V	TGCA	6 cut(s)	215, 239, 433, 1061, 1208, 1306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 72, 389, 424
HpyF3I	CTNAG	1 cut(s)	688
HpySE526I	ACGT	1 cut(s)	1218
Hsp92II	CATG	5 cut(s)	230, 380, 451, 1025, 1114
HspAI	GCGC	2 cut(s)	62, 64
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
LmnI	GCTCC	8 cut(s)	80, 97, 105, 122, 415, 532, 1202, 1310
Lsp1109I	GCAGC	1 cut(s)	1192
LweI	GCATC	3 cut(s)	202, 793, 1059
MaeI	CTAG	3 cut(s)	1047, 1107, 1318
MaeII	ACGT	1 cut(s)	1218
MaeIII	GTNAC	2 cut(s)	293, 775
MalI	GATC	7 cut(s)	443, 456, 466, 578, 636, 649, 678
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
MboII	GAAGA	5 cut(s)	322, 500, 604, 728, 1084
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	2 cut(s)	464, 576
MhlI	GDGCHC	3 cut(s)	102, 119, 871
MlsI	TGGCCA	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	131, 1091
MmeI	TCCRAC	1 cut(s)	682
Mox20I	TGGCCA	1 cut(s)	330
MroXI	GAANNNNTTC	3 cut(s)	17, 178, 196
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	5 cut(s)	422, 528, 663, 732, 1263
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	256, 485
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	256, 485
MvnI	CGCG	2 cut(s)	64, 66
MwoI	GCNNNNNNNGC	4 cut(s)	61, 72, 389, 424
NdeI	CATATG	1 cut(s)	1210
NdeII	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
NlaIII	CATG	5 cut(s)	230, 380, 451, 1025, 1114
NlaIV	GGNNCC	2 cut(s)	118, 260
NspI	RCATGY	2 cut(s)	230, 451
PauI	GCGCGC	1 cut(s)	62
PciI	ACATGT	1 cut(s)	226
PdmI	GAANNNNTTC	3 cut(s)	17, 178, 196
PfeI	GAWTC	2 cut(s)	722, 854
PkrI	GCNGC	3 cut(s)	795, 1117, 1207
PleI	GAGTC	2 cut(s)	131, 1090
PpsI	GAGTC	2 cut(s)	131, 1090
PpuMI	RGGWCCY	1 cut(s)	258
PscI	ACATGT	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	254, 483
PspGI	CCWGG	2 cut(s)	254, 483
PspN4I	GGNNCC	2 cut(s)	118, 260
PspPI	GGNCC	2 cut(s)	258, 655
PspPPI	RGGWCCY	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	1063
PstNI	CAGNNNCTG	1 cut(s)	1091
PsuI	RGATCY	2 cut(s)	464, 576
PteI	GCGCGC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	231, 1098
RsaNI	GTAC	2 cut(s)	230, 1097
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	5 cut(s)	422, 528, 663, 732, 1263
SatI	GCNGC	3 cut(s)	794, 1116, 1206
Sau3AI	GATC	7 cut(s)	441, 454, 464, 576, 634, 647, 676
Sau96I	GGNCC	2 cut(s)	258, 655
SchI	GAGTC	2 cut(s)	131, 1091
ScrFI	CCNGG	2 cut(s)	256, 485
SduI	GDGCHC	3 cut(s)	102, 119, 871
SfaNI	GCATC	3 cut(s)	202, 793, 1059
SfcI	CTRYAG	1 cut(s)	1059
SinI	GGWCC	2 cut(s)	258, 655
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	5 cut(s)	167, 263, 410, 498, 536
SmoI	CTYRAG	5 cut(s)	167, 263, 410, 498, 536
SsiI	CCGC	5 cut(s)	95, 133, 460, 793, 1115
SspI	AATATT	2 cut(s)	284, 736
SspMI	CTAG	3 cut(s)	1047, 1107, 1318
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	254, 483
TaaI	ACNGT	3 cut(s)	128, 569, 1275
TaiI	ACGT	1 cut(s)	1221
TaqI	TCGA	1 cut(s)	725
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	2 cut(s)	796, 1118
TfiI	GAWTC	2 cut(s)	722, 854
Tru1I	TTAA	5 cut(s)	422, 528, 663, 732, 1263
Tru9I	TTAA	5 cut(s)	422, 528, 663, 732, 1263
TscAI	CASTG	1 cut(s)	978
TseI	GCWGC	1 cut(s)	1205
TspDTI	ATGAA	3 cut(s)	393, 729, 1218
TspGWI	ACGGA	2 cut(s)	92, 102
TspRI	CASTG	1 cut(s)	978
VpaK11BI	GGWCC	2 cut(s)	258, 655
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	4 cut(s)	274, 357, 394, 949
XceI	RCATGY	2 cut(s)	230, 451
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	3 cut(s)	17, 178, 196
XspI	CTAG	3 cut(s)	1047, 1107, 1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.