RchiOBHm_Chr2g0160051

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002392
Physical Location & Seq
Forward (+)
76033918 .. 76037347
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52855

Sequence Viewer

Length: 636 bp
ATGGGGGAGCAGAGGAAGCTTTTCAAGACGAAGCTGTGCGCTTTGTATGAGAGAGGGCGGTGTTCGCGCCAGAGCTGCTCTTTTGCTCATGGCGAGGTTGAGCTACGTCGTTTTCAAGGCCCTTTTCACGGTAGGCGGGACTCTGGAGTTAGTGACTTGAGGGATACAATTGATAGAAGCTATTCTCCAAGGCGTGGGTATTCACCAGCAAGAGATGCAAGAGGCCGACATACACTTCGTGACTATAGTCCATCCAGGTCCCTTGAAAATGAAAGTAAGAGTAGGAAGAGACAGCACTTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAATTCCAAACGAGCCTGAAGATGAAGCTAAAGAAGCCAGCAGTGTTATTCAAAAGAAGTTACAGGTAGTACAGTCGGAGCTCAAAATGGTTGAGCACCGGAGATCTCAATTAGAGATCTACCTGGGAGAGAGGTCTAAAGAAGTGGATAGTCTTACTTCAAAAATACAAGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGAATGTAAGAGGATCTCCCATAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAGAGGCAAGCTCTTTTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

211

Amino Acids

24.75

Weight (kDa)

9.73

Isoelectric Point (pI)

66.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AccII CGCG 1 cut(s) 67
AciI CCGC 2 cut(s) 58, 136
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 369
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 128, 194
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 6 cut(s) 25, 116, 266, 383, 492, 594
AjnI CCWGG 2 cut(s) 254, 453
AluBI AGCT 9 cut(s) 19, 34, 75, 103, 180, 359, 412, 505, 623
AluI AGCT 9 cut(s) 19, 34, 75, 103, 180, 359, 412, 505, 623
Alw21I GWGCWC 2 cut(s) 414, 429
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 554
AoxI GGCC 2 cut(s) 118, 223
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 333
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
Asp700I GAANNNNTTC 2 cut(s) 20, 181
AspLEI GCGC 2 cut(s) 41, 69
AspS9I GGNCC 2 cut(s) 119, 258
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 414, 429
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 256, 455
BciVI GTATCC 2 cut(s) 157, 591
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 244
BfrI CTTAAG 1 cut(s) 611
BfuI GTATCC 2 cut(s) 157, 591
BglII AGATCT 2 cut(s) 434, 447
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 256, 455
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 119, 258
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 256, 455
BmsI GCATC 1 cut(s) 205
BoxI GACNNNNGTC 1 cut(s) 246
BplI GAGNNNNNCTC 1 cut(s) 607
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 178, 527
BsaJI CCNNGG 2 cut(s) 188, 454
BsaWI WCCGGW 1 cut(s) 429
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 194
BseBI CCWGG 2 cut(s) 256, 455
BseDI CCNNGG 2 cut(s) 188, 454
BseGI GGATG 2 cut(s) 251, 307
BseLI CCNNNNNNNGG 2 cut(s) 128, 194
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 120, 225
BsiHKAI GWGCWC 2 cut(s) 414, 429
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 2 cut(s) 152, 244
BslI CCNNNNNNNGG 2 cut(s) 128, 194
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 2 cut(s) 152, 244
BsnI GGCC 2 cut(s) 120, 225
Bsp1286I GDGCHC 2 cut(s) 414, 429
Bsp143I GATC 4 cut(s) 304, 434, 447, 546
BspACI CCGC 2 cut(s) 58, 136
BspANI GGCC 2 cut(s) 120, 225
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 1 cut(s) 554
BspTI CTTAAG 1 cut(s) 611
BssECI CCNNGG 2 cut(s) 188, 454
BssMI GATC 4 cut(s) 304, 434, 447, 546
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 256, 455
Bst4CI ACNGT 3 cut(s) 131, 311, 405
Bst6I CTCTTC 1 cut(s) 281
BstAFI CTTAAG 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 370, 621
BstF5I GGATG 2 cut(s) 251, 307
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 41, 69
BstKTI GATC 4 cut(s) 307, 437, 450, 549
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 4 cut(s) 304, 434, 447, 546
BstMWI GCNNNNNNNGC 5 cut(s) 16, 64, 75, 215, 365
BstNI CCWGG 2 cut(s) 256, 455
BstPAI GACNNNNGTC 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 254, 453
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 3 cut(s) 434, 447, 546
BstYI RGATCY 3 cut(s) 434, 447, 546
BsuI GTATCC 2 cut(s) 157, 591
BsuRI GGCC 2 cut(s) 120, 225
BtsCI GGATG 2 cut(s) 251, 307
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 316, 379
Cac8I GCNNGC 2 cut(s) 370, 621
CfoI GCGC 2 cut(s) 41, 69
Cfr13I GGNCC 2 cut(s) 119, 258
Csp6I GTAC 1 cut(s) 401
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 401
DpnI GATC 4 cut(s) 306, 436, 449, 548
DpnII GATC 4 cut(s) 304, 434, 447, 546
DraI TTTAAA 1 cut(s) 631
DraIII CACNNNGTG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 2 cut(s) 119, 258
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 254, 453
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 1 cut(s) 92
FaiI YATR 6 cut(s) 48, 90, 231, 246, 520, 555
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 152, 244
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 129
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 238, 314
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 76
GlaI GCGC 2 cut(s) 40, 68
GluI GCNGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 120, 225
HapII CCGG 1 cut(s) 430
HhaI GCGC 2 cut(s) 41, 69
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 2 cut(s) 39, 67
HinP1I GCGC 2 cut(s) 39, 67
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 430
HphI GGTGA 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 4 cut(s) 25, 144, 239, 321
Hpy99I CGWCG 1 cut(s) 111
HpyCH4III ACNGT 3 cut(s) 131, 311, 405
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 64, 75, 215, 365
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 2 cut(s) 39, 67
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 4 cut(s) 304, 434, 447, 546
LmnI GCTCC 2 cut(s) 7, 409
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 205
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 152, 239, 390
MalI GATC 4 cut(s) 306, 436, 449, 548
MboI GATC 4 cut(s) 304, 434, 447, 546
MboII GAAGA 2 cut(s) 298, 362
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 3 cut(s) 434, 447, 546
MhlI GDGCHC 2 cut(s) 414, 429
MluCI AATT 4 cut(s) 168, 333, 440, 515
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 387
MroXI GAANNNNTTC 2 cut(s) 20, 181
MseI TTAA 3 cut(s) 561, 612, 630
MslI CAYNNNNRTG 1 cut(s) 300
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 2 cut(s) 256, 455
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 2 cut(s) 256, 455
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 5 cut(s) 16, 64, 75, 215, 365
NdeII GATC 4 cut(s) 304, 434, 447, 546
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 152, 239
PdmI GAANNNNTTC 2 cut(s) 20, 181
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 254, 453
PspGI CCWGG 2 cut(s) 254, 453
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 2 cut(s) 119, 258
PspPPI RGGWCCY 1 cut(s) 258
PsuI RGATCY 3 cut(s) 434, 447, 546
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 561, 612, 630
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 4 cut(s) 304, 434, 447, 546
Sau96I GGNCC 2 cut(s) 119, 258
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 256, 455
SduI GDGCHC 2 cut(s) 414, 429
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 157, 506, 611
SmoI CTYRAG 3 cut(s) 157, 506, 611
Sse9I AATT 4 cut(s) 168, 333, 440, 515
SsiI CCGC 2 cut(s) 58, 136
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 2 cut(s) 254, 453
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 3 cut(s) 131, 311, 405
TaiI ACGT 1 cut(s) 109
TasI AATT 4 cut(s) 168, 333, 440, 515
TatI WGTACW 1 cut(s) 400
Tru1I TTAA 3 cut(s) 561, 612, 630
Tru9I TTAA 3 cut(s) 561, 612, 630
TscAI CASTG 2 cut(s) 316, 379
TseFI GTSAC 2 cut(s) 152, 239
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 2 cut(s) 152, 239
TspDTI ATGAA 2 cut(s) 285, 369
TspRI CASTG 2 cut(s) 316, 379
Van91I CCANNNNNTGG 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 333
XmnI GAANNNNTTC 2 cut(s) 20, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.