Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

33657611 .. 33662632

Gene Structure 5022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43530.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGTGGAGCAGAGGAAGCTGTTCAAGACGAAGCTGTGCGCTTTGTATGAGAGGGGGCGGTGTTCGCGGCAGAGCTGCTCTTTTGCTCATGGCGAGGTTGAGCTACGTGGTTTTGAAGGCTCGTCTCACGGTAGGCGGGACTCTGGAGTTAGTGACTTGAGGGAGAGAATTGACAGAAGCTATTCTCCAAAGCGAGGGTATTCACCAGCAAGAGATGCCAGAGGCCGACATACACTTCGTGAATATAGTCCATCCAGGTCCCTCGAAAAAGAAAGTAAGAGAAGGAAGAGACAGCACCTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAACTCCAAATGAGCCTGAAGATGAAGCTAAAGAAGCCAGAAGTGTTTTTCAAAAGCAGATACAGGTAGTGCAGTCAGAGCTCAAAATGGTTGAGCAACGCAGATCTCAATTAGAGGTCTACCTGGGAGAGAGGTCTCAAGAAGTGGGCAGTCTTACTTCAAAAATTCAAGAGCTTGAGGCCCAATTATACAAAGAAAAAGAGGACTGTAAGAGGATCTCCCATAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAAAGATCTCAGGTCCGACTAAATAAGTTGGGAGATCAGCTTGGTTTGGATACTTATGTAACTGATGCCAATGAAGAGGATGCAAGCATTAATATTGTCAGTGATGGGGAGACTGATTTTCCAGCCCCCTTACATAAGAAGCGGATGATTGATGTTTCTCCTATCAAGAAAAGGCTCAATTTAAATAGGGATCCTGCCCTAGAACCAAAAGCTGCTCATTCAACAAGAAGGCCACAGAGGCTCTCTCGGTGGAACATAAACCCTGCTCAATCAAATTTTGTGAATGGAAATGATGCAATGAACAACGGAATTGGGAGTCCAAGGCTCTTAGCAAAGGACAGCAAGCTTGACAGGAGGAAGGCTGCTTTGCCAAGTGTCGTCTATGCTGATGTGTCAAAGAATTCAGAGTCAGGACCTGCAGTACCCTCAACCAGCATGGCAGCTCATGCAGTGGATACTGAAATTGACATTGAATTGGACGGTAAACTTGAAAATGTTGATATTGCTTCTAGAAGAATCGAGGAGGAACCTACATATGAGAGTGGGATATTTTCACTTCCACTTCCTCCACCTCCCCCATTCCCTCCAAAGAACTTTTCACAGCATGAGGGCAATGACGAGATTGTAGATATTGTGGATGGAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

421

Amino Acids

47.61

Weight (kDa)

8.8

Isoelectric Point (pI)

66.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1036
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	67
AciI	CCGC	4 cut(s)	58, 67, 136, 754
AclWI	GGATC	3 cut(s)	554, 797, 810
AcsI	RAATTY	3 cut(s)	495, 886, 1012
AcuI	CTGAAG	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	1035
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	9 cut(s)	25, 116, 383, 492, 500, 594, 834, 1085, 1103
AjnI	CCWGG	3 cut(s)	254, 297, 453
AjuI	GAANNNNNNNTTGG	2 cut(s)	1192, 1224
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	4 cut(s)	129, 283, 471, 716
AlwI	GGATC	3 cut(s)	554, 797, 810
AlwNI	CAGNNNCTG	2 cut(s)	298, 1028
AoxI	GGCC	3 cut(s)	223, 510, 842
ApeKI	GCWGC	4 cut(s)	75, 824, 974, 1052
ApoI	RAATTY	3 cut(s)	495, 886, 1012
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AseI	ATTAAT	1 cut(s)	702
Asp700I	GAANNNNTTC	2 cut(s)	20, 181
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	258, 511, 625, 1025
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	258, 625, 1025
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BamHI	GGATCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	62, 811, 961, 1064
BccI	CCATC	3 cut(s)	259, 710, 1244
BciT130I	CCWGG	3 cut(s)	256, 299, 455
BciVI	GTATCC	3 cut(s)	591, 655, 1060
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	4 cut(s)	129, 283, 471, 716
BfaI	CTAG	2 cut(s)	812, 1122
BfmI	CTRYAG	1 cut(s)	1029
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	3 cut(s)	591, 655, 1060
BglI	GCCNNNNNGGC	1 cut(s)	850
BglII	AGATCT	2 cut(s)	434, 617
BisI	GCNGC	5 cut(s)	68, 76, 825, 975, 1053
BlsI	GCNGC	5 cut(s)	69, 77, 826, 976, 1054
Bme1390I	CCNGG	3 cut(s)	256, 299, 455
Bme18I	GGWCC	3 cut(s)	258, 625, 1025
BmgT120I	GGNCC	4 cut(s)	258, 511, 625, 1025
BmiI	GGNNCC	3 cut(s)	260, 804, 1140
BmrFI	CCNGG	3 cut(s)	256, 299, 455
BmsI	GCATC	4 cut(s)	205, 667, 682, 895
BplI	GAGNNNNNCTC	2 cut(s)	841, 873
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	3 cut(s)	178, 453, 527
BsaAI	YACGTR	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	454, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	915, 1231
BseBI	CCWGG	3 cut(s)	256, 299, 455
BseDI	CCNNGG	2 cut(s)	454, 932
BseGI	GGATG	5 cut(s)	251, 307, 697, 762, 1255
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	915, 1231
BseMII	CTCAG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	1148
BseXI	GCAGC	4 cut(s)	62, 811, 961, 1064
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	225, 512, 844
BsiHKAI	GWGCWC	1 cut(s)	414
BslFI	GGGAC	2 cut(s)	152, 244
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	4 cut(s)	129, 283, 471, 716
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	152, 244
BsnI	GGCC	3 cut(s)	225, 512, 844
Bso31I	GGTCTC	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
BspACI	CCGC	4 cut(s)	58, 67, 136, 754
BspANI	GGCC	3 cut(s)	225, 512, 844
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	260, 804, 1140
BspMAI	CTGCAG	1 cut(s)	1033
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	3 cut(s)	554, 797, 810
BspTNI	GGTCTC	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	915, 1231
BssECI	CCNNGG	2 cut(s)	454, 932
BssMI	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
BssT1I	CCWWGG	1 cut(s)	932
Bst2UI	CCWGG	3 cut(s)	256, 299, 455
Bst4CI	ACNGT	4 cut(s)	131, 311, 539, 1094
Bst6I	CTCTTC	2 cut(s)	281, 681
BstAPI	GCANNNNNTGC	2 cut(s)	215, 1058
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	697, 956
BstDEI	CTNAG	2 cut(s)	621, 940
BstF5I	GGATG	5 cut(s)	251, 307, 697, 762, 1255
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	6 cut(s)	307, 437, 549, 620, 649, 805
BstMAI	GTCTC	4 cut(s)	129, 283, 471, 716
BstMBI	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 64, 215, 365, 409, 850, 1058
BstNI	CCWGG	3 cut(s)	256, 299, 455
BstSCI	CCNGG	3 cut(s)	254, 297, 453
BstSFI	CTRYAG	1 cut(s)	1029
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	62, 811, 961, 1064
BstX2I	RGATCY	4 cut(s)	434, 546, 617, 802
BstYI	RGATCY	4 cut(s)	434, 546, 617, 802
BsuI	GTATCC	3 cut(s)	591, 655, 1060
BsuRI	GGCC	3 cut(s)	225, 512, 844
BtsCI	GGATG	5 cut(s)	251, 307, 697, 762, 1255
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	316, 718, 1068
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	2 cut(s)	697, 956
CaiI	CAGNNNCTG	2 cut(s)	298, 1028
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	258, 511, 625, 1025
Csp6I	GTAC	1 cut(s)	1034
CviAII	CATG	4 cut(s)	89, 1048, 1058, 1217
CviQI	GTAC	1 cut(s)	1034
DdeI	CTNAG	2 cut(s)	621, 940
DpnI	GATC	6 cut(s)	306, 436, 548, 619, 648, 804
DpnII	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
DraI	TTTAAA	1 cut(s)	795
DraIII	CACNNNGTG	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	281, 681
EarI	CTCTTC	2 cut(s)	281, 681
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	3 cut(s)	258, 625, 1025
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	258, 1025
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	3 cut(s)	254, 297, 453
EcoT14I	CCWWGG	1 cut(s)	932
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	932
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	4 cut(s)	92, 1051, 1061, 1220
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	2 cut(s)	152, 244
FatI	CATG	4 cut(s)	88, 1047, 1057, 1216
FauI	CCCGC	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	1147
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	5 cut(s)	68, 76, 825, 975, 1053
FokI	GGATG	4 cut(s)	238, 314, 704, 769
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	68, 76, 825, 975, 1053
FspBI	CTAG	2 cut(s)	812, 1122
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	68, 76, 825, 975, 1053
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	225, 512, 844
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	92, 1051, 1061, 1220
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	4 cut(s)	140, 928, 1019, 1128
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	451, 1097
Hpy188I	TCNGA	3 cut(s)	409, 629, 1018
Hpy188III	TCNNGA	9 cut(s)	25, 144, 239, 321, 470, 500, 778, 1023, 1122
Hpy8I	GTNNAC	2 cut(s)	451, 1097
HpyAV	CCTTC	4 cut(s)	110, 276, 834, 964
HpyCH4III	ACNGT	4 cut(s)	131, 311, 539, 1094
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	5 cut(s)	403, 695, 908, 1031, 1061
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 64, 215, 365, 409, 850, 1058
HpyF3I	CTNAG	2 cut(s)	621, 940
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	4 cut(s)	92, 1051, 1061, 1220
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	4 cut(s)	62, 811, 961, 1064
LweI	GCATC	4 cut(s)	205, 667, 682, 895
MaeI	CTAG	2 cut(s)	812, 1122
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	152, 670
MalI	GATC	6 cut(s)	306, 436, 548, 619, 648, 804
MboI	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
MboII	GAAGA	4 cut(s)	298, 362, 698, 1137
MflI	RGATCY	4 cut(s)	434, 546, 617, 802
MhlI	GDGCHC	1 cut(s)	414
MlyI	GAGTC	3 cut(s)	134, 937, 1028
MmeI	TCCRAC	1 cut(s)	652
MroXI	GAANNNNTTC	2 cut(s)	20, 181
MseI	TTAA	4 cut(s)	561, 612, 702, 794
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	256, 299, 455
MvaI	CCWGG	3 cut(s)	256, 299, 455
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	7 cut(s)	16, 64, 215, 365, 409, 850, 1058
NdeI	CATATG	1 cut(s)	1147
NdeII	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
NlaIII	CATG	4 cut(s)	92, 1051, 1061, 1220
NlaIV	GGNNCC	3 cut(s)	260, 804, 1140
NmuCI	GTSAC	1 cut(s)	152
PdmI	GAANNNNTTC	2 cut(s)	20, 181
PfeI	GAWTC	1 cut(s)	1128
PkrI	GCNGC	5 cut(s)	69, 77, 826, 976, 1054
PleI	GAGTC	3 cut(s)	134, 936, 1027
PpsI	GAGTC	3 cut(s)	134, 936, 1027
Ppu21I	YACGTR	1 cut(s)	107
PpuMI	RGGWCCY	2 cut(s)	258, 1025
PshBI	ATTAAT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	2 cut(s)	258, 1025
Psp6I	CCWGG	3 cut(s)	254, 297, 453
PspGI	CCWGG	3 cut(s)	254, 297, 453
PspN4I	GGNNCC	3 cut(s)	260, 804, 1140
PspPI	GGNCC	4 cut(s)	258, 511, 625, 1025
PspPPI	RGGWCCY	2 cut(s)	258, 1025
PstI	CTGCAG	1 cut(s)	1033
PstNI	CAGNNNCTG	2 cut(s)	298, 1028
PsuI	RGATCY	4 cut(s)	434, 546, 617, 802
RsaI	GTAC	1 cut(s)	1035
RsaNI	GTAC	1 cut(s)	1034
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	561, 612, 702, 794
SatI	GCNGC	5 cut(s)	68, 76, 825, 975, 1053
Sau3AI	GATC	6 cut(s)	304, 434, 546, 617, 646, 802
Sau96I	GGNCC	4 cut(s)	258, 511, 625, 1025
SchI	GAGTC	3 cut(s)	134, 937, 1028
ScrFI	CCNGG	3 cut(s)	256, 299, 455
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	4 cut(s)	205, 667, 682, 895
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	3 cut(s)	258, 625, 1025
SmiI	ATTTAAAT	1 cut(s)	795
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	157, 468, 506
SmoI	CTYRAG	3 cut(s)	157, 468, 506
SsiI	CCGC	4 cut(s)	58, 67, 136, 754
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	2 cut(s)	812, 1122
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	3 cut(s)	254, 297, 453
StyI	CCWWGG	1 cut(s)	932
SwaI	ATTTAAAT	1 cut(s)	795
TaaI	ACNGT	4 cut(s)	131, 311, 539, 1094
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	264, 1131
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	1128
Tru1I	TTAA	4 cut(s)	561, 612, 702, 794
Tru9I	TTAA	4 cut(s)	561, 612, 702, 794
TscAI	CASTG	3 cut(s)	316, 718, 1068
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	4 cut(s)	75, 824, 974, 1052
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	369, 699, 926
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	3 cut(s)	316, 718, 1068
VpaK11BI	GGWCC	3 cut(s)	258, 625, 1025
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	3 cut(s)	495, 886, 1012
XbaI	TCTAGA	1 cut(s)	1121
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	2 cut(s)	20, 181
XspI	CTAG	2 cut(s)	812, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.