Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Reverse (-)

61100069 .. 61101001

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0480200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTTTTATGGATTCGGTTATGATTCCACCACTGAAGATTACAAGGTCATACTAGGGGACAGCTCTATAGGAGAGTACTTTGATGATGGTGATTTTAAGTGTCTCAACGAAGTTGCTGTCTTTACACTTAAAACAGGTTCATGGAGGAACTATTATGAAGAAAGGAGGGCGAATGGTACCAATGAAAGACAGGGCATTAGATTGGCTGGACAAGGGTGCTTATCAAATGGAGCTCTACATTGGATGGAACTTGTGTTCGACTATAGATACTGCCTAAATGGTTCGAGCTCAAGGATTATGTCTTTTGATTTAGCTCGGGAGAAATTTCAAGAGATGGTGTCACTATCCAGTTTTGTCGACAAAGAATGTTTGGACCACATTTCCGCCTCCTACGGAACCTTAGTCGGATCCTCGATCGAAACTTTTGCCGGAATTGGGAGTACTATTGAAAACAATCTTCTTGTATACTTTTACGTTCCTAGCATTAATACCAGTGATACTACGCTTACAATATGGGTGATGAATGAATATGGGGTCAAGGCATTGTGGACTAAACTCTTGCACTTCACTTCAAAGATTTCAATTGTTCAAAAATATCCAGCTGGTTTACATGATTGCCTATTTCCTGTACACATTTTAGAAAACGGCGAAGTTTTGATGAGTTGCAATGAACACGAGTTGGTGCTATACAATCCAAAAGAAAAGACGAACAAGACTGTTCTTGTTACTAATTTGTCCTGTGAAGGAATCATGTACGCAGAAACTTTGATTACACCGGTAATTGGTGGTGAAGTAGACGTCTGTAACCAAAAGTGTGGAGAAGCAGAAGCAAGTAAAACACAGATCGACTACTTTGCAACGAGCTGTCTAAGCCTTGACACACCGGTTATGTCTGTTGGCAAGAAGCCTTGGAAGCTTAGGGTTAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

310

Amino Acids

34.76

Weight (kDa)

5.08

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	2 - 225	2.4e-10	F-box associated beta propeller domain
FBA_3	PF08268	3 - 246	3.3e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	801
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	3 cut(s)	357, 465, 795
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	2 cut(s)	402, 415
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	798
AfaI	GTAC	5 cut(s)	77, 178, 442, 630, 755
AfiI	CCNNNNNNNGG	2 cut(s)	435, 782
AgeI	ACCGGT	2 cut(s)	775, 883
AgsI	TTSAA	5 cut(s)	329, 449, 573, 582, 590
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	7 cut(s)	63, 233, 288, 314, 602, 864, 916
AluI	AGCT	7 cut(s)	63, 233, 288, 314, 602, 864, 916
Alw21I	GWGCWC	2 cut(s)	235, 290
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	402, 415
Ama87I	CYCGRG	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AseI	ATTAAT	1 cut(s)	486
AsiGI	ACCGGT	2 cut(s)	775, 883
Asp718I	GGTACC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	3 cut(s)	101, 529, 800
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	235, 290
BauI	CACGAG	1 cut(s)	674
Bbv12I	GWGCWC	2 cut(s)	235, 290
BccI	CCATC	3 cut(s)	80, 238, 328
BceAI	ACGGC	1 cut(s)	661
BcgI	CGANNNNNNTGC	4 cut(s)	407, 441, 836, 870
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	53, 480
BfmI	CTRYAG	2 cut(s)	66, 262
BmcAI	AGTACT	2 cut(s)	77, 442
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	178, 397, 409
Bpu10I	CCTNAGC	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	908
BsaWI	WCCGGW	2 cut(s)	775, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 782
Bse118I	RCCGGY	2 cut(s)	775, 883
Bse1I	ACTGG	2 cut(s)	348, 492
Bse3DI	GCAATG	1 cut(s)	673
BseDI	CCNNGG	1 cut(s)	908
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	435, 782
BseMI	GCAATG	1 cut(s)	673
BseNI	ACTGG	2 cut(s)	348, 492
Bsh1285I	CGRYCG	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	2 cut(s)	775, 883
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	235, 290
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	429, 776, 884
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	435, 782
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	235, 290
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	407, 414, 843
BspACI	CCGC	1 cut(s)	384
BspLI	GGNNCC	3 cut(s)	178, 397, 409
BspPI	GGATC	2 cut(s)	402, 415
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	673
BsrFI	RCCGGY	2 cut(s)	775, 883
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	348, 492
BssAI	RCCGGY	2 cut(s)	775, 883
BssECI	CCNNGG	1 cut(s)	908
BssMI	GATC	3 cut(s)	407, 414, 843
BssNAI	GTATAC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	798
BssSI	CACGAG	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	908
Bst1107I	GTATAC	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	674
Bst4CI	ACNGT	1 cut(s)	718
BstACI	GRCGYC	1 cut(s)	798
BstAUI	TGTACA	1 cut(s)	628
BstDEI	CTNAG	4 cut(s)	400, 869, 917, 930
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	410, 417, 846
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	407, 414, 843
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	2 cut(s)	870, 913
BstSFI	CTRYAG	2 cut(s)	66, 262
BstX2I	RGATCY	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	30, 499
Cfr10I	RCCGGY	2 cut(s)	775, 883
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	5 cut(s)	76, 177, 441, 629, 754
CspAI	ACCGGT	2 cut(s)	775, 883
CviAII	CATG	3 cut(s)	141, 611, 751
CviQI	GTAC	5 cut(s)	76, 177, 441, 629, 754
DdeI	CTNAG	4 cut(s)	400, 869, 917, 930
DpnI	GATC	3 cut(s)	409, 416, 845
DpnII	GATC	3 cut(s)	407, 414, 843
EciI	GGCGGA	1 cut(s)	373
Ecl136II	GAGCTC	2 cut(s)	233, 288
Eco130I	CCWWGG	1 cut(s)	908
Eco24I	GRGCYC	2 cut(s)	235, 290
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	2 cut(s)	233, 288
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	315
EcoICRI	GAGCTC	2 cut(s)	233, 288
EcoT14I	CCWWGG	1 cut(s)	908
EcoT38I	GRGCYC	2 cut(s)	235, 290
ErhI	CCWWGG	1 cut(s)	908
FaeI	CATG	3 cut(s)	144, 614, 754
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	3 cut(s)	140, 610, 750
FblI	GTMKAC	3 cut(s)	357, 465, 795
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	2 cut(s)	235, 290
FspBI	CTAG	2 cut(s)	53, 480
HapII	CCGG	3 cut(s)	429, 776, 884
Hin1I	GRCGYC	1 cut(s)	798
Hin1II	CATG	3 cut(s)	144, 614, 754
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	3 cut(s)	12, 23, 747
HpaII	CCGG	3 cut(s)	429, 776, 884
HphI	GGTGA	3 cut(s)	101, 529, 800
Hpy166II	GTNNAC	6 cut(s)	358, 466, 549, 608, 631, 796
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	2 cut(s)	317, 329
Hpy8I	GTNNAC	6 cut(s)	358, 466, 549, 608, 631, 796
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4IV	ACGT	2 cut(s)	474, 798
HpyCH4V	TGCA	3 cut(s)	562, 666, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	870, 913
HpyF3I	CTNAG	4 cut(s)	400, 869, 917, 930
HpySE526I	ACGT	2 cut(s)	474, 798
Hsp92I	GRCGYC	1 cut(s)	798
Hsp92II	CATG	3 cut(s)	144, 614, 754
KpnI	GGTACC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	407, 414, 843
LmnI	GCTCC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	53, 480
MaeII	ACGT	2 cut(s)	474, 798
MaeIII	GTNAC	3 cut(s)	339, 724, 803
MalI	GATC	3 cut(s)	409, 416, 845
MboI	GATC	3 cut(s)	407, 414, 843
MboII	GAAGA	3 cut(s)	47, 170, 449
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	235, 290
MluCI	AATT	5 cut(s)	323, 432, 582, 730, 780
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	4 cut(s)	138, 159, 397, 421
MseI	TTAA	4 cut(s)	96, 129, 486, 924
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	3 cut(s)	429, 776, 884
MunI	CAATTG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	870, 913
NdeII	GATC	3 cut(s)	407, 414, 843
NlaIII	CATG	3 cut(s)	144, 614, 754
NlaIV	GGNNCC	3 cut(s)	178, 397, 409
NmuCI	GTSAC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	12, 23, 747
PinAI	ACCGGT	2 cut(s)	775, 883
Ple19I	CGATCG	1 cut(s)	417
PshBI	ATTAAT	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	235, 290
PspN4I	GGNNCC	3 cut(s)	178, 397, 409
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	5 cut(s)	77, 178, 442, 630, 755
RsaNI	GTAC	5 cut(s)	76, 177, 441, 629, 754
SacI	GAGCTC	2 cut(s)	235, 290
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	96, 129, 486, 924
Sau3AI	GATC	3 cut(s)	407, 414, 843
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	2 cut(s)	77, 442
SduI	GDGCHC	2 cut(s)	235, 290
SfcI	CTRYAG	2 cut(s)	66, 262
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	5 cut(s)	323, 432, 582, 730, 780
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	2 cut(s)	53, 480
SstI	GAGCTC	2 cut(s)	235, 290
StyI	CCWWGG	1 cut(s)	908
TaaI	ACNGT	1 cut(s)	718
TaiI	ACGT	2 cut(s)	477, 801
TaqI	TCGA	6 cut(s)	258, 284, 357, 413, 417, 846
TasI	AATT	5 cut(s)	323, 432, 582, 730, 780
TatI	WGTACW	3 cut(s)	75, 440, 628
TfiI	GAWTC	3 cut(s)	12, 23, 747
Tru1I	TTAA	4 cut(s)	96, 129, 486, 924
Tru9I	TTAA	4 cut(s)	96, 129, 486, 924
TscAI	CASTG	2 cut(s)	37, 499
TseFI	GTSAC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	6 cut(s)	129, 171, 198, 536, 540, 684
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	37, 499
VpaK11BI	GGWCC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	1 cut(s)	323
XmiI	GTMKAC	3 cut(s)	357, 465, 795
XspI	CTAG	2 cut(s)	53, 480
ZraI	GACGTC	1 cut(s)	799
ZrmI	AGTACT	2 cut(s)	77, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.