Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

6312456 .. 6315140

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1053400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTATTAGTGATTCTGCCAAAGAATCAAAACAAAGTGGTAGTTTTTATTATGGATACTCACACATTCGAGATGTATACCAGCTCATTGAACAAGAGGACATCTAGCAGTCCAAAGAAGCTCTCTCGGTGCAGCATACACTTTCCTCAATCAAATTTTGACAAGGAGGATCCAGTGAACAATGGAATTGGTGATGATCCAAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

7.83

Weight (kDa)

8.89

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	164, 177, 191
AcsI	RAATTY	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	2 cut(s)	84, 121
AluI	AGCT	2 cut(s)	84, 121
AlwI	GGATC	3 cut(s)	164, 177, 191
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	169, 196
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	3 cut(s)	164, 177, 191
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	169, 196
BssNAI	GTATAC	1 cut(s)	78
Bst1107I	GTATAC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	172, 199
BstMBI	GATC	2 cut(s)	169, 196
BstV1I	GCAGC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	180
CviJI	RGCY	2 cut(s)	84, 121
CviKI_1	RGCY	2 cut(s)	84, 121
DpnI	GATC	2 cut(s)	171, 198
DpnII	GATC	2 cut(s)	169, 196
FaiI	YATR	3 cut(s)	53, 78, 137
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	13, 25
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	78, 178
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	78, 178
HpyCH4V	TGCA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	169, 196
LpnPI	CCDG	2 cut(s)	94, 186
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	105
MalI	GATC	2 cut(s)	171, 198
MboI	GATC	2 cut(s)	169, 196
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	2 cut(s)	154, 186
MnlI	CCTC	3 cut(s)	90, 156, 160
MseI	TTAA	1 cut(s)	208
NdeII	GATC	2 cut(s)	169, 196
NlaIV	GGNNCC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	13, 25
PkrI	GCNGC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	208
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	169, 196
SetI	ASST	2 cut(s)	86, 123
SgeI	CNNG	7 cut(s)	82, 93, 106, 117, 138, 175, 185
Sse9I	AATT	2 cut(s)	154, 186
SspMI	CTAG	1 cut(s)	105
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	154, 186
TfiI	GAWTC	2 cut(s)	13, 25
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	132
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.