Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013519.1

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

11971 .. 13986

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013519.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atggagatttggactcttatcagcactcaggattgttttaaggcttcgtggagcttgcataaatcggtacatttaaaggccaagcagtccaatagggcgggaaatccagagaacgaaggctggcaatattgcatgaagaaaggacagggtcaaactccgaaacttccttattttgattggacagggacattgagaccatatcctatatctagtaagcgtgtggtaccttctcatgttgatctacctgattgggcagctgatggaatcccaaaagaggaacccagttgtgacctgcagcgtgttgttgaggaagagtttctgttaataaagtcaaagggatttatcctgaaaaagttgggagatcagcttggtttagatgcttatggaattcgtgccaatgaagaggattcaagcattaatattgtcagcgacagggaaactcattttccagtccccttaaataaggagcagctgaatgacgtttctccgagcaagaaaaggctcgatgtaaataggaattcttccaaggaaccaaaacgaggtgaagggcaagctgtggctattgtggcagcagtaaccttacatggaaggtgcctgcctttgcttcaaactttggaagaactgatggttgctgaggtctatatagtgaatcattgtgatttggctggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

223

Amino Acids

25.02

Weight (kDa)

6.32

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	2 cut(s)	223, 591
AciI	CCGC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	387, 517
AfaI	GTAC	2 cut(s)	69, 225
AfiI	CCNNNNNNNGG	2 cut(s)	274, 539
AgsI	TTSAA	2 cut(s)	411, 608
AluBI	AGCT	5 cut(s)	54, 257, 367, 472, 554
AluI	AGCT	5 cut(s)	54, 257, 367, 472, 554
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	4 cut(s)	254, 295, 469, 569
ApoI	RAATTY	2 cut(s)	387, 517
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	315
Asp718I	GGTACC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	554
BanI	GGYRCC	2 cut(s)	223, 591
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	4 cut(s)	266, 307, 481, 581
BccI	CCATC	2 cut(s)	254, 619
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	4 cut(s)	255, 296, 470, 570
BlsI	GCNGC	4 cut(s)	256, 297, 471, 571
BmiI	GGNNCC	4 cut(s)	225, 279, 531, 593
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 539
Bse1I	ACTGG	2 cut(s)	282, 449
BseDI	CCNNGG	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	274, 539
BseMII	CTCAG	2 cut(s)	41, 624
BseNI	ACTGG	2 cut(s)	282, 449
BseXI	GCAGC	4 cut(s)	266, 307, 481, 581
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	2 cut(s)	223, 591
BslFI	GGGAC	2 cut(s)	199, 437
BslI	CCNNNNNNNGG	2 cut(s)	274, 539
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	199, 437
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	238, 361
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	40, 625
BspLI	GGNNCC	4 cut(s)	225, 279, 531, 593
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	300
BspT107I	GGYRCC	2 cut(s)	223, 591
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	282, 449
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	238, 361
BssT1I	CCWWGG	1 cut(s)	525
Bst6I	CTCTTC	2 cut(s)	306, 396
BstC8I	GCNNGC	4 cut(s)	56, 122, 552, 596
BstDEI	CTNAG	2 cut(s)	27, 633
BstKTI	GATC	2 cut(s)	241, 364
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	238, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	4 cut(s)	266, 307, 481, 581
BsuRI	GGCC	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	300
Cac8I	GCNNGC	4 cut(s)	56, 122, 552, 596
Csp6I	GTAC	2 cut(s)	68, 224
CviAII	CATG	3 cut(s)	133, 233, 584
CviQI	GTAC	2 cut(s)	68, 224
DdeI	CTNAG	2 cut(s)	27, 633
DpnI	GATC	2 cut(s)	240, 363
DpnII	GATC	2 cut(s)	238, 361
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	306, 396
EarI	CTCTTC	2 cut(s)	306, 396
Eco130I	CCWWGG	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	187
EcoRI	GAATTC	2 cut(s)	387, 517
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	3 cut(s)	136, 236, 587
FaiI	YATR	9 cut(s)	60, 134, 199, 206, 234, 384, 585, 642, 644
FaqI	GGGAC	2 cut(s)	199, 437
FatI	CATG	3 cut(s)	132, 232, 583
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	255, 296, 470, 570
Fsp4HI	GCNGC	4 cut(s)	255, 296, 470, 570
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	4 cut(s)	255, 296, 470, 570
HaeIII	GGCC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	136, 236, 587
HinfI	GANTC	4 cut(s)	13, 264, 407, 649
HphI	GGTGA	1 cut(s)	554
Hpy188I	TCNGA	2 cut(s)	159, 489
Hpy188III	TCNNGA	3 cut(s)	29, 107, 346
HpyAV	CCTTC	4 cut(s)	110, 237, 539, 582
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	58, 132, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	2 cut(s)	27, 633
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	136, 236, 587
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	238, 361
LmnI	GCTCC	2 cut(s)	51, 466
Lsp1109I	GCAGC	4 cut(s)	266, 307, 481, 581
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	287, 574
MalI	GATC	2 cut(s)	240, 363
MboI	GATC	2 cut(s)	238, 361
MboII	GAAGA	5 cut(s)	148, 323, 413, 513, 629
MluCI	AATT	2 cut(s)	387, 517
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	268, 301, 397, 533, 628
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	6 cut(s)	39, 74, 323, 417, 458, 670
MspA1I	CMGCKG	2 cut(s)	257, 472
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	2 cut(s)	238, 361
NlaIII	CATG	3 cut(s)	136, 236, 587
NlaIV	GGNNCC	4 cut(s)	225, 279, 531, 593
NmuCI	GTSAC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	264, 407, 649
PflFI	GACNNNGTC	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	256, 297, 471, 571
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	417
PspN4I	GGNNCC	4 cut(s)	225, 279, 531, 593
PstI	CTGCAG	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	147
PvuII	CAGCTG	2 cut(s)	257, 472
RsaI	GTAC	2 cut(s)	69, 225
RsaNI	GTAC	2 cut(s)	68, 224
SaqAI	TTAA	6 cut(s)	39, 74, 323, 417, 458, 670
SatI	GCNGC	4 cut(s)	255, 296, 470, 570
Sau3AI	GATC	2 cut(s)	238, 361
SchI	GAGTC	1 cut(s)	7
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	387, 517
SsiI	CCGC	1 cut(s)	98
SspI	AATATT	2 cut(s)	128, 421
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	525
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	504
TasI	AATT	2 cut(s)	387, 517
TfiI	GAWTC	3 cut(s)	264, 407, 649
Tru1I	TTAA	6 cut(s)	39, 74, 323, 417, 458, 670
Tru9I	TTAA	6 cut(s)	39, 74, 323, 417, 458, 670
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	254, 295, 469, 569
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	149, 414
Tth111I	GACNNNGTC	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	2 cut(s)	387, 517
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.