Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Forward (+)

77033890 .. 77039323

Gene Structure 5434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG560000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGGAGCAGAGGAAGCTTTTCAAGACGAAGCTGTGCGCTTTGTATGAGAGAGGGCGGTGTTCGCGCCAGAGCTGCTCTTTTGCTCATGGCGAGGTTGAGCTACGTCGTTTTCAAGGCCCTTTTCACGGTAGGCGGGACTCTGGAGTTAGTGACTTGAGGGATACAATTGATAGAAGCTATTCTCCAAGGCGAGGGTATTCACCAGCTAGAGATGCAAGAGGCCGACATACACTTCGTGACTATAGTCCATCCAGGTCCCTTGAAAATGAAAGTAAGAGTAGGAAGAGACAACACTTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAATTCCAAACGAGCCTGAAGATGAAGCTAAAGAAGCCAGCAGTATTATTCAAAAGAAGTTACAGGTAGTACAGTCGGAGCTCAAAATGGTTGAGCACCGGAGATCTCAATTAGAGATCTACCTGGGAGAGAGGTCTAAAGAAGTGGATAGTCTTACTTCAAAAATACAAGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGAATGTAAGAGGATCTCCCATAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAGAGATCACAGGTCCGACTAAATAAGTTGGGAGATCAGCTTGGTTTAGATACTTATGGAATTGATGCCAATGAAGAGGATTCAAGCATTAATATTGTCAGTGATGGGGAGACTCATTTTCCAGTCCCCATAAATAAGGAGCGGCTGAATGATGTTTCTCCAAGCAAGAAAAGGCTCGATGTAAATAGGGATTCTGCCAAAGAACCAAAACAAGCTTTTCCAACAAGAGAGTACCTTACCACAACAAGAAGACCTCAGAAGCTCTCTCGGTGGAACATAAACCCTGCGCAATCAAATTTTGTGCATGAAAATGATGCAATGAATAACGGAATTGGGAGTCCAAAGCTCTTAGCAAAGGACGACAAGCATGACAGGAGCAAGGCTGCTTCCTCTAGCGTCGTCTCTGCTGATGTGATAAAGAGTTCAGAGTCAGGACCTGTGGTACCCTCAACCAGCATGGCAGCTCACGCAGTGGATACTGAAAATGACATTGAACTGGACGTTAAAGTTGAGAATGTTGAGAATGCTTCTAGAAGAATCGAGGGGGAACCTACATATGAGAGCGGGATCTTTCCATTTCCACTTCCTCCACCACCCCCATTCCCTCCGAAGAACTTTCCACAGCATGAGGGCAATGATGAGATTGTAGATATTGTGGATGGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

427

Amino Acids

48.45

Weight (kDa)

8.18

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	900
Acc65I	GGTACC	1 cut(s)	1054
AccB1I	GGYRCC	1 cut(s)	1054
AccBSI	CCGCTC	2 cut(s)	754, 1176
AccII	CGCG	1 cut(s)	67
AciI	CCGC	4 cut(s)	58, 136, 754, 1176
AclWI	GGATC	2 cut(s)	554, 1187
AcsI	RAATTY	2 cut(s)	333, 907
AcuI	CTGAAG	1 cut(s)	369
AdeI	CACNNNGTG	2 cut(s)	239, 1084
AfaI	GTAC	3 cut(s)	402, 845, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	128, 194
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	8 cut(s)	25, 116, 266, 383, 492, 594, 696, 1106
AjnI	CCWGG	2 cut(s)	254, 453
Alw21I	GWGCWC	2 cut(s)	414, 429
Alw26I	GTCTC	3 cut(s)	283, 716, 1018
AlwI	GGATC	2 cut(s)	554, 1187
AlwNI	CAGNNNCTG	1 cut(s)	1049
AoxI	GGCC	2 cut(s)	118, 223
ApeKI	GCWGC	3 cut(s)	75, 995, 1073
ApoI	RAATTY	2 cut(s)	333, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AseI	ATTAAT	1 cut(s)	702
Asp700I	GAANNNNTTC	2 cut(s)	20, 181
Asp718I	GGTACC	1 cut(s)	1054
AspLEI	GCGC	3 cut(s)	41, 69, 901
AspS9I	GGNCC	4 cut(s)	119, 258, 625, 1046
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	258, 625, 1046
BanI	GGYRCC	1 cut(s)	1054
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	868
Bbv12I	GWGCWC	2 cut(s)	414, 429
BbvI	GCAGC	3 cut(s)	62, 982, 1085
BccI	CCATC	3 cut(s)	259, 710, 1265
BciT130I	CCWGG	2 cut(s)	256, 455
BciVI	GTATCC	3 cut(s)	157, 591, 1081
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	3 cut(s)	283, 716, 1018
BfaI	CTAG	3 cut(s)	210, 1005, 1143
BfmI	CTRYAG	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	611
BfuI	GTATCC	3 cut(s)	157, 591, 1081
BglII	AGATCT	2 cut(s)	434, 447
BisI	GCNGC	4 cut(s)	76, 755, 996, 1074
BlsI	GCNGC	4 cut(s)	77, 756, 997, 1075
Bme1390I	CCNGG	2 cut(s)	256, 455
Bme18I	GGWCC	3 cut(s)	258, 625, 1046
BmgT120I	GGNCC	4 cut(s)	119, 258, 625, 1046
BmiI	GGNNCC	3 cut(s)	260, 1056, 1161
BmrFI	CCNGG	2 cut(s)	256, 455
BmsI	GCATC	3 cut(s)	205, 667, 916
BoxI	GACNNNNGTC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	868
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	178, 527
BsaJI	CCNNGG	2 cut(s)	188, 454
BsaWI	WCCGGW	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 194
Bse1I	ACTGG	2 cut(s)	734, 1113
Bse3DI	GCAATG	2 cut(s)	936, 1252
BseBI	CCWGG	2 cut(s)	256, 455
BseDI	CCNNGG	2 cut(s)	188, 454
BseGI	GGATG	3 cut(s)	251, 307, 1276
BseLI	CCNNNNNNNGG	2 cut(s)	128, 194
BseMI	GCAATG	2 cut(s)	936, 1252
BseMII	CTCAG	1 cut(s)	881
BseNI	ACTGG	2 cut(s)	734, 1113
BseXI	GCAGC	3 cut(s)	62, 982, 1085
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	120, 225
BshNI	GGYRCC	1 cut(s)	1054
BsiHKAI	GWGCWC	2 cut(s)	414, 429
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	3 cut(s)	152, 244, 722
BslI	CCNNNNNNNGG	2 cut(s)	128, 194
BsmAI	GTCTC	3 cut(s)	283, 716, 1018
BsmBI	CGTCTC	1 cut(s)	1018
BsmFI	GGGAC	3 cut(s)	152, 244, 722
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	2 cut(s)	120, 225
Bsp1286I	GDGCHC	2 cut(s)	414, 429
Bsp143I	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
BspACI	CCGC	4 cut(s)	58, 136, 754, 1176
BspANI	GGCC	2 cut(s)	120, 225
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	260, 1056, 1161
BspPI	GGATC	2 cut(s)	554, 1187
BspT107I	GGYRCC	1 cut(s)	1054
BspTI	CTTAAG	1 cut(s)	611
BsrBI	CCGCTC	2 cut(s)	754, 1176
BsrDI	GCAATG	2 cut(s)	936, 1252
BsrI	ACTGG	2 cut(s)	734, 1113
BssECI	CCNNGG	2 cut(s)	188, 454
BssMI	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	256, 455
Bst4CI	ACNGT	3 cut(s)	131, 311, 405
Bst6I	CTCTTC	2 cut(s)	281, 681
BstAFI	CTTAAG	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	867, 961
BstF5I	GGATG	3 cut(s)	251, 307, 1276
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	3 cut(s)	41, 69, 901
BstKTI	GATC	7 cut(s)	307, 437, 450, 549, 620, 649, 1182
BstMAI	GTCTC	3 cut(s)	283, 716, 1018
BstMBI	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 64, 75, 215, 365, 1079
BstNI	CCWGG	2 cut(s)	256, 455
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	254, 453
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	62, 982, 1085
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	4 cut(s)	434, 447, 546, 1179
BstYI	RGATCY	4 cut(s)	434, 447, 546, 1179
BsuI	GTATCC	3 cut(s)	157, 591, 1081
BsuRI	GGCC	2 cut(s)	120, 225
BtsCI	GGATG	3 cut(s)	251, 307, 1276
BtsI	GCAGTG	1 cut(s)	1089
BtsIMutI	CAGTG	3 cut(s)	316, 718, 1089
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	1049
CfoI	GCGC	3 cut(s)	41, 69, 901
Cfr13I	GGNCC	4 cut(s)	119, 258, 625, 1046
CseI	GACGC	1 cut(s)	997
Csp6I	GTAC	3 cut(s)	401, 844, 1055
CviAII	CATG	5 cut(s)	89, 917, 980, 1069, 1238
CviQI	GTAC	3 cut(s)	401, 844, 1055
DdeI	CTNAG	2 cut(s)	867, 961
DpnI	GATC	7 cut(s)	306, 436, 449, 548, 619, 648, 1181
DpnII	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
DraIII	CACNNNGTG	2 cut(s)	239, 1084
Eam1104I	CTCTTC	2 cut(s)	281, 681
EarI	CTCTTC	2 cut(s)	281, 681
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	3 cut(s)	258, 625, 1046
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	3 cut(s)	119, 258, 1046
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	254, 453
EcoT14I	CCWWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	1018
FaeI	CATG	5 cut(s)	92, 920, 983, 1072, 1241
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	3 cut(s)	152, 244, 722
FatI	CATG	5 cut(s)	88, 916, 979, 1068, 1237
FauI	CCCGC	2 cut(s)	129, 1169
FauNDI	CATATG	1 cut(s)	1168
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	4 cut(s)	76, 755, 996, 1074
FokI	GGATG	2 cut(s)	238, 314
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	76, 755, 996, 1074
FspBI	CTAG	3 cut(s)	210, 1005, 1143
FspI	TGCGCA	1 cut(s)	900
GlaI	GCGC	3 cut(s)	40, 68, 900
GluI	GCNGC	4 cut(s)	76, 755, 996, 1074
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	120, 225
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	1 cut(s)	997
HhaI	GCGC	3 cut(s)	41, 69, 901
Hin1II	CATG	5 cut(s)	92, 920, 983, 1072, 1241
Hin6I	GCGC	3 cut(s)	39, 67, 899
HinP1I	GCGC	3 cut(s)	39, 67, 899
HindIII	AAGCTT	2 cut(s)	17, 825
HinfI	GANTC	7 cut(s)	140, 692, 724, 803, 949, 1040, 1149
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	1 cut(s)	195
Hpy188I	TCNGA	5 cut(s)	409, 629, 870, 1039, 1221
Hpy188III	TCNNGA	6 cut(s)	25, 144, 239, 321, 1044, 1143
Hpy99I	CGWCG	2 cut(s)	111, 1013
HpyCH4III	ACNGT	3 cut(s)	131, 311, 405
HpyCH4IV	ACGT	2 cut(s)	106, 1113
HpyCH4V	TGCA	3 cut(s)	218, 916, 929
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 64, 75, 215, 365, 1079
HpyF3I	CTNAG	2 cut(s)	867, 961
HpySE526I	ACGT	2 cut(s)	106, 1113
Hsp92II	CATG	5 cut(s)	92, 920, 983, 1072, 1241
HspAI	GCGC	3 cut(s)	39, 67, 899
KpnI	GGTACC	1 cut(s)	1058
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
LmnI	GCTCC	4 cut(s)	7, 409, 751, 987
Lsp1109I	GCAGC	3 cut(s)	62, 982, 1085
LweI	GCATC	3 cut(s)	205, 667, 916
MaeI	CTAG	3 cut(s)	210, 1005, 1143
MaeII	ACGT	2 cut(s)	106, 1113
MaeIII	GTNAC	3 cut(s)	152, 239, 390
MalI	GATC	7 cut(s)	306, 436, 449, 548, 619, 648, 1181
MbiI	CCGCTC	2 cut(s)	754, 1176
MboI	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
MboII	GAAGA	6 cut(s)	298, 362, 698, 873, 1158, 1234
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	4 cut(s)	434, 447, 546, 1179
MhlI	GDGCHC	2 cut(s)	414, 429
MluCI	AATT	7 cut(s)	168, 333, 440, 515, 672, 907, 942
MlyI	GAGTC	4 cut(s)	134, 718, 958, 1049
MmeI	TCCRAC	3 cut(s)	387, 652, 857
MroXI	GAANNNNTTC	2 cut(s)	20, 181
MseI	TTAA	4 cut(s)	561, 612, 702, 1116
MslI	CAYNNNNRTG	2 cut(s)	300, 921
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	256, 455
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	2 cut(s)	256, 455
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	6 cut(s)	16, 64, 75, 215, 365, 1079
NdeI	CATATG	1 cut(s)	1168
NdeII	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
NlaIII	CATG	5 cut(s)	92, 920, 983, 1072, 1241
NlaIV	GGNNCC	3 cut(s)	260, 1056, 1161
NmuCI	GTSAC	2 cut(s)	152, 239
NsbI	TGCGCA	1 cut(s)	900
PctI	GAATGC	1 cut(s)	1141
PdmI	GAANNNNTTC	2 cut(s)	20, 181
PfeI	GAWTC	3 cut(s)	692, 803, 1149
PkrI	GCNGC	4 cut(s)	77, 756, 997, 1075
PleI	GAGTC	4 cut(s)	134, 718, 957, 1048
PpsI	GAGTC	4 cut(s)	134, 718, 957, 1048
PpuMI	RGGWCCY	2 cut(s)	258, 1046
PshAI	GACNNNNGTC	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	2 cut(s)	258, 1046
Psp6I	CCWGG	2 cut(s)	254, 453
PspGI	CCWGG	2 cut(s)	254, 453
PspN4I	GGNNCC	3 cut(s)	260, 1056, 1161
PspPI	GGNCC	4 cut(s)	119, 258, 625, 1046
PspPPI	RGGWCCY	2 cut(s)	258, 1046
PstNI	CAGNNNCTG	1 cut(s)	1049
PsuI	RGATCY	4 cut(s)	434, 447, 546, 1179
RsaI	GTAC	3 cut(s)	402, 845, 1056
RsaNI	GTAC	3 cut(s)	401, 844, 1055
RseI	CAYNNNNRTG	2 cut(s)	300, 921
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	561, 612, 702, 1116
SatI	GCNGC	4 cut(s)	76, 755, 996, 1074
Sau3AI	GATC	7 cut(s)	304, 434, 447, 546, 617, 646, 1179
Sau96I	GGNCC	4 cut(s)	119, 258, 625, 1046
SchI	GAGTC	4 cut(s)	134, 718, 958, 1049
ScrFI	CCNGG	2 cut(s)	256, 455
SduI	GDGCHC	2 cut(s)	414, 429
SfaNI	GCATC	3 cut(s)	205, 667, 916
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	3 cut(s)	258, 625, 1046
SmiMI	CAYNNNNRTG	2 cut(s)	300, 921
SmlI	CTYRAG	3 cut(s)	157, 506, 611
SmoI	CTYRAG	3 cut(s)	157, 506, 611
Sse9I	AATT	7 cut(s)	168, 333, 440, 515, 672, 907, 942
SsiI	CCGC	4 cut(s)	58, 136, 754, 1176
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	3 cut(s)	210, 1005, 1143
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	254, 453
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	131, 311, 405
TaiI	ACGT	2 cut(s)	109, 1116
TaqI	TCGA	2 cut(s)	789, 1152
TasI	AATT	7 cut(s)	168, 333, 440, 515, 672, 907, 942
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	3 cut(s)	692, 803, 1149
Tru1I	TTAA	4 cut(s)	561, 612, 702, 1116
Tru9I	TTAA	4 cut(s)	561, 612, 702, 1116
TscAI	CASTG	3 cut(s)	316, 718, 1089
TseFI	GTSAC	2 cut(s)	152, 239
TseI	GCWGC	3 cut(s)	75, 995, 1073
Tsp45I	GTSAC	2 cut(s)	152, 239
TspDTI	ATGAA	5 cut(s)	285, 369, 699, 933, 947
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	3 cut(s)	316, 718, 1089
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	3 cut(s)	258, 625, 1046
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	2 cut(s)	333, 907
XbaI	TCTAGA	1 cut(s)	1142
XmnI	GAANNNNTTC	2 cut(s)	20, 181
XspI	CTAG	3 cut(s)	210, 1005, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.