Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002392

Physical Location & Seq

Genomic Coordinates Reverse (-)

11915567 .. 11920954

Gene Structure 5388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTTACCCATGTTTTTCTATAATGGTAGGCGGGACTCTGGAGGTAGTGACTTGAGGGATACAATTGATAGAAGCTATTCTCCAAGGCGAGGGTATTCACCAGCAAGAGATGCAAGAGGCCGACATACACTTCGTGACTATAGTCCATCCAGGTCCCTTGAAAACGAAAGTAAGAGAAGGAAGAGACAGCACTTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAATTCCAAACGAGCCTGAAGATGAAGCTAAAGAAGCCAGCAGTGTTATTCAAAAGAAGTTACAGGTAGTACAGTCGGAGCTCAAAATGGTTGAGCAACAGAGATCTCAATTAGAGATCTACCTGGGAGAGAGGTCTAAACAAGTGGATAGTCTTACTTCAAAAATACAAGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGAATGTAAGAGGATCTCCCATAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAGAGATCACAGGTCCGACTAAATAAGTTGGGAGATCAGCTTGGTTTAGATACTTATGGAATTGATGCCAATGAAGTAGATTCAAGCATTAATATTGTCAGCGATGGGGAGACTCATTTTCCAGTCCCCATAAAAAAGGAGAATCTGAATGACGTTTCTCCAAGCAAGAAAAGGCTCGATGTAAATAGGGATTCTGCCAAAGAACCAAAACAAGCTCTTTCAACAAGAGAGTACCTTACCACAACAAGAAGACCTCAGAAGCTCTCTCGGTGGAACATAAACCCTGCGCAACCAAATTTTGTGCATGAAAATGATGCAATGAATAACGGAATTGGGAGTCCAAAGCTCTTAGCAAAGGACGACAAGCATGACAGGAGGAAGGCTGCTTCCTCTAGTGTCGTCTCTGCTGATGTGATAAAGAGTTCGGAGTCAGGACCTGTGGTACCCTCAACCAGCATGGCAGCTCACGCAGTGAATACTGAAAATGACATTGAACTGGACGGTAAAGTTGAGAATGTTGAGAATGCTTCTGGAAGAATCAAGGGGGAACCTATATACGAGAGCGGGATATTTCCATTTCCACTTCCTCCACCACCCCCATTCCCTCCAAAGAACTTTCCACAGCATGAGGGCGATGATGAGATTGTAGATATTGTGGATGGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

392

Amino Acids

44.25

Weight (kDa)

7.81

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21810 AT3G21810
fragaria_vesca	FvH4_6g43530 FvH4_6g43530 FvH4_6g43530 FvH4_6g43530
malus_domestica	MD04G1053400.v1.1 MD04G1053600.v1.1 MD09G1105200.v1.1
prunus_persica	Prupe.3G220100_v2.0.a1 Prupe.3G220100_v2.0.a1
pyrus_communis	pycom05g17840 pycom09g02830
rosa_chinensis	RchiOBHm_Chr2g0160051 RchiOBHm_Chr2g0160061
rosa_laevigata	RLG00000021194
rosa_multiflora	Rmu_sc0002023.1_g000015 Rmu_sc0013519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090060 Rroxscaffold_4G00309610
rosa_rugosa	Rorug01G0120500 Rorug02G0480000 Rorug02G0480000 Rorug02G0480100 Rorug02G0480100 Rorug02G0480200 Rorug03G0356600 Rorug03G0356700 Rorug03G0356800 Rorug06G0182300
rosa_samantha	Rh1AG135100 Rh1BG158100 Rh2AG546600 Rh2BG560000 Rh2CG530000 Rh2DG568700 Rh4CG275700 Rh5AG077800 Rh5AG298500 Rh7BG126200
rosa_wichuraiana	Rw2G012000 Rw2G045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	795
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	949
AccBSI	CCGCTC	1 cut(s)	1071
AciI	CCGC	2 cut(s)	31, 1071
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	228, 802
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	134, 979
AfaI	GTAC	3 cut(s)	297, 740, 951
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	7 cut(s)	161, 278, 387, 489, 591, 729, 1001
AjnI	CCWGG	2 cut(s)	149, 348
AluBI	AGCT	9 cut(s)	75, 254, 307, 400, 547, 722, 769, 853, 971
AluI	AGCT	9 cut(s)	75, 254, 307, 400, 547, 722, 769, 853, 971
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	178, 611, 913
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	944
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	890, 968
ApoI	RAATTY	2 cut(s)	228, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	949
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	3 cut(s)	153, 520, 941
AsuHPI	GGTGA	1 cut(s)	90
AvaII	GGWCC	3 cut(s)	153, 520, 941
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	877, 980
BccI	CCATC	3 cut(s)	154, 605, 1160
BciT130I	CCWGG	2 cut(s)	151, 350
BciVI	GTATCC	2 cut(s)	52, 486
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	178, 611, 913
BfaI	CTAG	1 cut(s)	900
BfmI	CTRYAG	1 cut(s)	139
BfrI	CTTAAG	1 cut(s)	506
BfuI	GTATCC	2 cut(s)	52, 486
BglII	AGATCT	2 cut(s)	329, 342
BisI	GCNGC	2 cut(s)	891, 969
BlsI	GCNGC	2 cut(s)	892, 970
Bme1390I	CCNGG	2 cut(s)	151, 350
Bme18I	GGWCC	3 cut(s)	153, 520, 941
BmgT120I	GGNCC	3 cut(s)	153, 520, 941
BmiI	GGNNCC	3 cut(s)	155, 951, 1056
BmrFI	CCNGG	2 cut(s)	151, 350
BmsI	GCATC	3 cut(s)	100, 562, 811
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	763
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	73, 422
BsaJI	CCNNGG	2 cut(s)	83, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	629, 1008
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	151, 350
BseDI	CCNNGG	2 cut(s)	83, 349
BseGI	GGATG	3 cut(s)	146, 202, 1171
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	2 cut(s)	629, 1008
BseXI	GCAGC	2 cut(s)	877, 980
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	309
BslFI	GGGAC	3 cut(s)	47, 139, 617
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	3 cut(s)	178, 611, 913
BsmBI	CGTCTC	1 cut(s)	913
BsmFI	GGGAC	3 cut(s)	47, 139, 617
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
BspACI	CCGC	2 cut(s)	31, 1071
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	775
BspLI	GGNNCC	3 cut(s)	155, 951, 1056
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	949
BspTI	CTTAAG	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	1071
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	629, 1008
BssECI	CCNNGG	2 cut(s)	83, 349
BssMI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	151, 350
Bst4CI	ACNGT	3 cut(s)	206, 300, 1010
Bst6I	CTCTTC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	762, 856
BstF5I	GGATG	3 cut(s)	146, 202, 1171
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	6 cut(s)	202, 332, 345, 444, 515, 544
BstMAI	GTCTC	3 cut(s)	178, 611, 913
BstMBI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 260, 974
BstNI	CCWGG	2 cut(s)	151, 350
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	149, 348
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	877, 980
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	3 cut(s)	329, 342, 441
BstYI	RGATCY	3 cut(s)	329, 342, 441
BsuI	GTATCC	2 cut(s)	52, 486
BsuRI	GGCC	1 cut(s)	120
BtgZI	GCGATG	2 cut(s)	624, 1155
BtsCI	GGATG	3 cut(s)	146, 202, 1171
BtsI	GCAGTG	2 cut(s)	274, 984
BtsIMutI	CAGTG	3 cut(s)	211, 274, 984
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	3 cut(s)	153, 520, 941
Csp6I	GTAC	3 cut(s)	296, 739, 950
CviAII	CATG	5 cut(s)	10, 812, 875, 964, 1133
CviQI	GTAC	3 cut(s)	296, 739, 950
DdeI	CTNAG	2 cut(s)	762, 856
DpnI	GATC	6 cut(s)	201, 331, 344, 443, 514, 543
DpnII	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
DraIII	CACNNNGTG	2 cut(s)	134, 979
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	3 cut(s)	153, 520, 941
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	2 cut(s)	153, 941
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	149, 348
EcoT14I	CCWWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	913
FaeI	CATG	5 cut(s)	13, 815, 878, 967, 1136
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	3 cut(s)	47, 139, 617
FatI	CATG	5 cut(s)	9, 811, 874, 963, 1132
FauI	CCCGC	2 cut(s)	24, 1064
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	891, 969
FokI	GGATG	2 cut(s)	133, 209
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	891, 969
FspBI	CTAG	1 cut(s)	900
FspI	TGCGCA	1 cut(s)	795
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	2 cut(s)	891, 969
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	5 cut(s)	13, 815, 878, 967, 1136
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	8 cut(s)	35, 587, 619, 649, 698, 844, 935, 1044
HphI	GGTGA	1 cut(s)	90
Hpy188I	TCNGA	5 cut(s)	304, 524, 654, 765, 934
Hpy188III	TCNNGA	5 cut(s)	39, 134, 216, 939, 1038
HpyAV	CCTTC	2 cut(s)	171, 880
HpyCH4III	ACNGT	3 cut(s)	206, 300, 1010
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	3 cut(s)	113, 811, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 260, 974
HpyF3I	CTNAG	2 cut(s)	762, 856
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	5 cut(s)	13, 815, 878, 967, 1136
HspAI	GCGC	1 cut(s)	794
KpnI	GGTACC	1 cut(s)	953
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	2 cut(s)	877, 980
LweI	GCATC	3 cut(s)	100, 562, 811
MaeI	CTAG	1 cut(s)	900
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	4 cut(s)	3, 47, 134, 285
MalI	GATC	6 cut(s)	201, 331, 344, 443, 514, 543
MbiI	CCGCTC	1 cut(s)	1071
MboI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
MboII	GAAGA	4 cut(s)	193, 257, 768, 1053
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	329, 342, 441
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	7 cut(s)	63, 228, 335, 410, 567, 802, 837
MlyI	GAGTC	4 cut(s)	29, 613, 853, 944
MmeI	TCCRAC	2 cut(s)	282, 547
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	3 cut(s)	456, 507, 597
MslI	CAYNNNNRTG	2 cut(s)	195, 816
MspCI	CTTAAG	1 cut(s)	506
MspR9I	CCNGG	2 cut(s)	151, 350
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	2 cut(s)	151, 350
MwoI	GCNNNNNNNGC	3 cut(s)	110, 260, 974
NdeII	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
NlaIII	CATG	5 cut(s)	13, 815, 878, 967, 1136
NlaIV	GGNNCC	3 cut(s)	155, 951, 1056
NmuCI	GTSAC	2 cut(s)	47, 134
NsbI	TGCGCA	1 cut(s)	795
PctI	GAATGC	1 cut(s)	1036
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	587, 649, 698, 1044
PkrI	GCNGC	2 cut(s)	892, 970
PleI	GAGTC	4 cut(s)	29, 613, 852, 943
PpsI	GAGTC	4 cut(s)	29, 613, 852, 943
PpuMI	RGGWCCY	2 cut(s)	153, 941
PshAI	GACNNNNGTC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	2 cut(s)	153, 941
Psp6I	CCWGG	2 cut(s)	149, 348
PspGI	CCWGG	2 cut(s)	149, 348
PspN4I	GGNNCC	3 cut(s)	155, 951, 1056
PspPI	GGNCC	3 cut(s)	153, 520, 941
PspPPI	RGGWCCY	2 cut(s)	153, 941
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	3 cut(s)	329, 342, 441
RsaI	GTAC	3 cut(s)	297, 740, 951
RsaNI	GTAC	3 cut(s)	296, 739, 950
RseI	CAYNNNNRTG	2 cut(s)	195, 816
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	456, 507, 597
SatI	GCNGC	2 cut(s)	891, 969
Sau3AI	GATC	6 cut(s)	199, 329, 342, 441, 512, 541
Sau96I	GGNCC	3 cut(s)	153, 520, 941
SchI	GAGTC	4 cut(s)	29, 613, 853, 944
ScrFI	CCNGG	2 cut(s)	151, 350
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	3 cut(s)	100, 562, 811
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	3 cut(s)	153, 520, 941
SmiMI	CAYNNNNRTG	2 cut(s)	195, 816
SmlI	CTYRAG	3 cut(s)	52, 401, 506
SmoI	CTYRAG	3 cut(s)	52, 401, 506
Sse9I	AATT	7 cut(s)	63, 228, 335, 410, 567, 802, 837
SsiI	CCGC	2 cut(s)	31, 1071
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	1 cut(s)	900
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	149, 348
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	206, 300, 1010
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	1 cut(s)	684
TasI	AATT	7 cut(s)	63, 228, 335, 410, 567, 802, 837
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	4 cut(s)	587, 649, 698, 1044
Tru1I	TTAA	3 cut(s)	456, 507, 597
Tru9I	TTAA	3 cut(s)	456, 507, 597
TscAI	CASTG	3 cut(s)	211, 274, 984
TseFI	GTSAC	2 cut(s)	47, 134
TseI	GCWGC	2 cut(s)	890, 968
Tsp45I	GTSAC	2 cut(s)	47, 134
TspDTI	ATGAA	4 cut(s)	264, 594, 828, 842
TspGWI	ACGGA	1 cut(s)	849
TspRI	CASTG	3 cut(s)	211, 274, 984
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	153, 520, 941
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	228, 802
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.