Rorug03G0356600

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
44226207 .. 44227320
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0356600.1

Sequence Viewer

Length: 789 bp
ATGATGGCTACTCAGAATCTGAATGGGCGGGTGGCAATTGTCACCGGCGGTTCTCGTGGCATCGGCCGTGAAATTGCTGTCCACCTCCACTCCCTGGGCGCAAGACTTGTCATCAACTACGCTTCCAGTTCCAAGCAGGCAGACGAATTGGCCTCCCACCTCAACAGCAACAGCAACAACAACAAGAGCTCACAGTTGGCGGCCATTGCAGTAAAAGCAGATGTTTCAGATCCAGATCAGGTGAAGCTCCTCTTCGACAAAGCCGAGCAAGAATTGGGTGCCCAGGTCCACATCCTGGTCAACTGCGCCGGCGTCTTGGATTCCAAGTACCCGTCTCTGGCCGACACCTTTGTCCAGGATTGGGATAACATATTCAATGTCAACACCAAAGGGGCCTTCTTGGCTTGCAGAGAGGCCGCCAACAGACTCCCACGCGGCGCCGGCGGAAGAATTATAATGATTACCACCTCCGTTGTTGGGGGACTGATGCCCGGATACGCCGCCTATGCTGCCTCCAAGGCCGCCGTGGAGACCATGACCAAAATTGTCGCCAAGGAGCTCAAGGGCACCGGCATCACTGCCAACTGTGTTGCTCCCGGCCCTGTTGCCACCGACCTCTTCTTCGCCGGTAAAAGTGAGGAGACCATCAACAGGATCAAGGATGCTTGCCCTCTTGGCCGCCTTGGTCAGCCCCACGATGTGTCCCAGGTTGTCGGATTTTTAGCCGGCGATGCAGGGGAGTGGATCAACGGTCAGGTCATTAGGGTTAATGGTGGATTTGTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

262

Amino Acids

27.47

Weight (kDa)

7.69

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 10 - 207 1.6e-46 short chain dehydrogenase
SDR PF23441 10 - 260 5e-11 SDR-like rossmann domain
KR PF08659 13 - 191 2e-12 KR domain
adh_short_C2 PF13561 19 - 260 9.2e-54 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AasI GACNNNNNNGTC 1 cut(s) 350
AccB1I GGYRCC 3 cut(s) 278, 437, 566
AccB7I CCANNNNNTGG 2 cut(s) 94, 295
AccII CGCG 1 cut(s) 435
AciI CCGC 9 cut(s) 28, 48, 200, 417, 435, 444, 501, 522, 679
AclWI GGATC 3 cut(s) 224, 662, 752
AcoI YGGCCR 4 cut(s) 64, 201, 339, 676
AcyI GRCGYC 2 cut(s) 312, 438
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 6 cut(s) 94, 295, 337, 361, 477, 651
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 5 cut(s) 93, 282, 294, 354, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 3 cut(s) 189, 247, 559
AluI AGCT 3 cut(s) 189, 247, 559
Alw21I GWGCWC 2 cut(s) 191, 561
Alw26I GTCTC 3 cut(s) 339, 524, 635
AlwI GGATC 3 cut(s) 224, 662, 752
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 9 cut(s) 64, 150, 201, 339, 393, 414, 519, 598, 676
ApeKI GCWGC 1 cut(s) 509
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AspLEI GCGC 3 cut(s) 101, 308, 440
AspS9I GGNCC 3 cut(s) 286, 393, 599
AsuC2I CCSGG 2 cut(s) 492, 597
AsuHPI GGTGA 2 cut(s) 34, 253
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 2 cut(s) 283, 569
BanI GGYRCC 3 cut(s) 278, 437, 566
BanII GRGCYC 2 cut(s) 191, 561
BauI CACGAG 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 191, 561
BbvI GCAGC 1 cut(s) 496
BccI CCATC 1 cut(s) 653
BceAI ACGGC 2 cut(s) 51, 509
BciT130I CCWGG 5 cut(s) 95, 284, 296, 356, 707
BciVI GTATCC 1 cut(s) 488
BcnI CCSGG 2 cut(s) 492, 597
BcoDI GTCTC 3 cut(s) 339, 524, 635
BfoI RGCGCY 1 cut(s) 441
BfuI GTATCC 1 cut(s) 488
BglI GCCNNNNNGGC 3 cut(s) 401, 518, 675
BisI GCNGC 7 cut(s) 201, 417, 436, 501, 510, 522, 679
BlsI GCNGC 7 cut(s) 202, 418, 437, 502, 511, 523, 680
Bme1390I CCNGG 7 cut(s) 95, 284, 296, 356, 492, 597, 707
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 3 cut(s) 286, 393, 599
BmiI GGNNCC 4 cut(s) 280, 394, 439, 568
BmrFI CCNGG 7 cut(s) 95, 284, 296, 356, 492, 597, 707
BmsI GCATC 5 cut(s) 69, 477, 582, 652, 721
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 492, 597
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 312, 438
BsaI GGTCTC 2 cut(s) 524, 635
BsaJI CCNNGG 8 cut(s) 93, 94, 282, 516, 525, 552, 682, 705
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 295, 337, 361, 477, 651
Bse118I RCCGGY 6 cut(s) 44, 308, 440, 569, 626, 725
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 5 cut(s) 95, 284, 296, 356, 707
BseDI CCNNGG 8 cut(s) 93, 94, 282, 516, 525, 552, 682, 705
BseGI GGATG 2 cut(s) 291, 667
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 6 cut(s) 94, 295, 337, 361, 477, 651
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 239, 653
BseSI GKGCMC 2 cut(s) 283, 569
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 435
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 9 cut(s) 66, 152, 203, 341, 395, 416, 521, 600, 678
BshNI GGYRCC 3 cut(s) 278, 437, 566
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 191, 561
BsiSI CCGG 8 cut(s) 45, 309, 441, 492, 570, 597, 627, 726
BslFI GGGAC 2 cut(s) 495, 688
BslI CCNNNNNNNGG 6 cut(s) 94, 295, 337, 361, 477, 651
BsmAI GTCTC 3 cut(s) 339, 524, 635
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 495, 688
BsnI GGCC 9 cut(s) 66, 152, 203, 341, 395, 416, 521, 600, 678
Bso31I GGTCTC 2 cut(s) 524, 635
Bsp1286I GDGCHC 4 cut(s) 191, 283, 561, 569
Bsp143I GATC 4 cut(s) 229, 235, 654, 744
BspACI CCGC 9 cut(s) 28, 48, 200, 417, 435, 444, 501, 522, 679
BspANI GGCC 9 cut(s) 66, 152, 203, 341, 395, 416, 521, 600, 678
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 435
BspLI GGNNCC 4 cut(s) 280, 394, 439, 568
BspPI GGATC 3 cut(s) 224, 662, 752
BspT107I GGYRCC 3 cut(s) 278, 437, 566
BspTNI GGTCTC 2 cut(s) 524, 635
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 6 cut(s) 44, 308, 440, 569, 626, 725
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 6 cut(s) 44, 308, 440, 569, 626, 725
BssECI CCNNGG 8 cut(s) 93, 94, 282, 516, 525, 552, 682, 705
BssMI GATC 4 cut(s) 229, 235, 654, 744
BssNI GRCGYC 2 cut(s) 312, 438
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 3 cut(s) 516, 552, 682
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 5 cut(s) 95, 284, 296, 356, 707
Bst4CI ACNGT 3 cut(s) 195, 587, 752
Bst6I CTCTTC 2 cut(s) 257, 623
BstACI GRCGYC 2 cut(s) 312, 438
BstC8I GCNNGC 6 cut(s) 138, 310, 406, 442, 667, 727
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 291, 667
BstFNI CGCG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 3 cut(s) 101, 308, 440
BstKTI GATC 4 cut(s) 232, 238, 657, 747
BstMAI GTCTC 3 cut(s) 339, 524, 635
BstMBI GATC 4 cut(s) 229, 235, 654, 744
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 9 cut(s) 206, 215, 401, 441, 506, 509, 518, 675, 731
BstNI CCWGG 5 cut(s) 95, 284, 296, 356, 707
BstSCI CCNGG 7 cut(s) 93, 282, 294, 354, 490, 595, 705
BstSLI GKGCMC 2 cut(s) 283, 569
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 496
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BstZI CGGCCG 1 cut(s) 64
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 9 cut(s) 66, 152, 203, 341, 395, 416, 521, 600, 678
BtgI CCRYGG 1 cut(s) 525
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 2 cut(s) 291, 667
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 6 cut(s) 138, 310, 406, 442, 667, 727
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 3 cut(s) 101, 308, 440
Cfr10I RCCGGY 6 cut(s) 44, 308, 440, 569, 626, 725
Cfr13I GGNCC 3 cut(s) 286, 393, 599
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 328
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 1 cut(s) 535
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 439
DpnI GATC 4 cut(s) 231, 237, 656, 746
DpnII GATC 4 cut(s) 229, 235, 654, 744
DraIII CACNNNGTG 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 4 cut(s) 64, 201, 339, 676
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 257, 623
EarI CTCTTC 2 cut(s) 257, 623
EciI GGCGGA 1 cut(s) 459
Ecl136II GAGCTC 2 cut(s) 189, 559
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 516, 552, 682
Eco24I GRGCYC 2 cut(s) 191, 561
Eco31I GGTCTC 2 cut(s) 524, 635
Eco47I GGWCC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 64
Eco53kI GAGCTC 2 cut(s) 189, 559
EcoICRI GAGCTC 2 cut(s) 189, 559
EcoO109I RGGNCCY 1 cut(s) 393
EcoRII CCWGG 5 cut(s) 93, 282, 294, 354, 705
EcoT14I CCWWGG 3 cut(s) 516, 552, 682
EcoT38I GRGCYC 2 cut(s) 191, 561
EgeI GGCGCC 1 cut(s) 439
EheI GGCGCC 1 cut(s) 439
ErhI CCWWGG 3 cut(s) 516, 552, 682
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 1 cut(s) 538
FaiI YATR 4 cut(s) 371, 455, 507, 536
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 495, 688
FatI CATG 1 cut(s) 534
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 7 cut(s) 201, 417, 436, 501, 510, 522, 679
FokI GGATG 2 cut(s) 278, 674
FriOI GRGCYC 2 cut(s) 191, 561
Fsp4HI GCNGC 7 cut(s) 201, 417, 436, 501, 510, 522, 679
GlaI GCGC 3 cut(s) 100, 307, 439
GluI GCNGC 7 cut(s) 201, 417, 436, 501, 510, 522, 679
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 9 cut(s) 66, 152, 203, 341, 395, 416, 521, 600, 678
HapII CCGG 8 cut(s) 45, 309, 441, 492, 570, 597, 627, 726
HgaI GACGC 1 cut(s) 301
HhaI GCGC 3 cut(s) 101, 308, 440
Hin1I GRCGYC 2 cut(s) 312, 438
Hin1II CATG 1 cut(s) 538
Hin6I GCGC 3 cut(s) 99, 306, 438
HinP1I GCGC 3 cut(s) 99, 306, 438
HincII GTYRAC 2 cut(s) 301, 382
HindII GTYRAC 2 cut(s) 301, 382
HinfI GANTC 3 cut(s) 16, 320, 426
HpaII CCGG 8 cut(s) 45, 309, 441, 492, 570, 597, 627, 726
HphI GGTGA 2 cut(s) 34, 253
Hpy166II GTNNAC 4 cut(s) 82, 289, 301, 382
Hpy188I TCNGA 5 cut(s) 15, 21, 229, 716, 788
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 4 cut(s) 82, 289, 301, 382
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 3 cut(s) 195, 587, 752
HpyCH4V TGCA 3 cut(s) 209, 408, 734
HpyF10VI GCNNNNNNNGC 9 cut(s) 206, 215, 401, 441, 506, 509, 518, 675, 731
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 2 cut(s) 312, 438
Hsp92II CATG 1 cut(s) 538
HspAI GCGC 3 cut(s) 99, 306, 438
KasI GGCGCC 1 cut(s) 437
KroI GCCGGC 3 cut(s) 308, 440, 725
KroNI GCCGGC 3 cut(s) 310, 442, 727
Kzo9I GATC 4 cut(s) 229, 235, 654, 744
LmnI GCTCC 3 cut(s) 252, 556, 598
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 5 cut(s) 69, 477, 582, 652, 721
MaeIII GTNAC 1 cut(s) 40
MalI GATC 4 cut(s) 231, 237, 656, 746
MboI GATC 4 cut(s) 229, 235, 654, 744
MboII GAAGA 4 cut(s) 244, 459, 610, 613
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 4 cut(s) 191, 283, 561, 569
MluCI AATT 6 cut(s) 36, 72, 146, 272, 450, 543
Mly113I GGCGCC 1 cut(s) 438
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 694
MreI CGCCGGCG 2 cut(s) 308, 440
MroNI GCCGGC 3 cut(s) 308, 440, 725
MseI TTAA 1 cut(s) 768
MspI CCGG 8 cut(s) 45, 309, 441, 492, 570, 597, 627, 726
MspR9I CCNGG 7 cut(s) 95, 284, 296, 356, 492, 597, 707
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 5 cut(s) 95, 284, 296, 356, 707
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 9 cut(s) 206, 215, 401, 441, 506, 509, 518, 675, 731
NaeI GCCGGC 3 cut(s) 310, 442, 727
NarI GGCGCC 1 cut(s) 438
NciI CCSGG 2 cut(s) 492, 597
NdeII GATC 4 cut(s) 229, 235, 654, 744
NgoMIV GCCGGC 3 cut(s) 308, 440, 725
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 4 cut(s) 280, 394, 439, 568
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 40
PasI CCCWGGG 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 3 cut(s) 310, 442, 727
PfeI GAWTC 2 cut(s) 16, 320
PflMI CCANNNNNTGG 2 cut(s) 94, 295
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 7 cut(s) 202, 418, 437, 502, 511, 523, 680
PleI GAGTC 1 cut(s) 420
PluTI GGCGCC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 420
PsiI TTATAA 1 cut(s) 455
Psp124BI GAGCTC 2 cut(s) 191, 561
Psp6I CCWGG 5 cut(s) 93, 282, 294, 354, 705
PspGI CCWGG 5 cut(s) 93, 282, 294, 354, 705
PspN4I GGNNCC 4 cut(s) 280, 394, 439, 568
PspPI GGNCC 3 cut(s) 286, 393, 599
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 2 cut(s) 191, 561
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 7 cut(s) 201, 417, 436, 501, 510, 522, 679
Sau3AI GATC 4 cut(s) 229, 235, 654, 744
Sau96I GGNCC 3 cut(s) 286, 393, 599
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 7 cut(s) 95, 284, 296, 356, 492, 597, 707
SduI GDGCHC 4 cut(s) 191, 283, 561, 569
SfaNI GCATC 5 cut(s) 69, 477, 582, 652, 721
SfoI GGCGCC 1 cut(s) 439
SgrAI CRCCGGYG 3 cut(s) 44, 308, 440
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 6 cut(s) 36, 72, 146, 272, 450, 543
SsiI CCGC 9 cut(s) 28, 48, 200, 417, 435, 444, 501, 522, 679
SspDI GGCGCC 1 cut(s) 437
SstI GAGCTC 2 cut(s) 191, 561
StyD4I CCNGG 7 cut(s) 93, 282, 294, 354, 490, 595, 705
StyI CCWWGG 3 cut(s) 516, 552, 682
TaaI ACNGT 3 cut(s) 195, 587, 752
TaqI TCGA 1 cut(s) 255
TasI AATT 6 cut(s) 36, 72, 146, 272, 450, 543
TauI GCSGC 6 cut(s) 203, 419, 438, 503, 524, 681
TfiI GAWTC 2 cut(s) 16, 320
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 1 cut(s) 583
Van91I CCANNNNNTGG 2 cut(s) 94, 295
VpaK11BI GGWCC 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.