Rh5AG298500

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002392
Physical Location & Seq
Reverse (-)
41680992 .. 41684710
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG298500.1

Sequence Viewer

Length: 390 bp
ATGCGAGAAACTTGTCGATTGGGAGATCAGCTTGGTTTAGATGCTTATGGAATTCGTGCCAATGAAGAGGATTCAAGCATTAATATTGTCAGCGACAGGGAAACTCATTTTCCAGTCCCCTTAAATAAGGAGCAGCTGAATGACGTTTCTCCGAGCAAGAAAAGGCTCGATGTAAATAGGAATTCTTCCAATGAACCAAAACGAGGTGAAGGGCAAGCTGTGGCTATTGTGGCAGCAGTAACCTTACATGGAAGGTGCCTGCCTTTGCTTCAAACTTTGGAAGAACTGATGGTTGCTGAGGTCTATATAGTGAATCATTGTGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

129

Amino Acids

14.29

Weight (kDa)

5.38

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AcsI RAATTY 2 cut(s) 51, 181
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 75, 272
AluBI AGCT 4 cut(s) 31, 136, 218, 370
AluI AGCT 4 cut(s) 31, 136, 218, 370
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 133, 233, 353
ApoI RAATTY 2 cut(s) 51, 181
AseI ATTAAT 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 218
BanI GGYRCC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 3 cut(s) 145, 245, 340
BccI CCATC 1 cut(s) 283
BfaI CTAG 1 cut(s) 371
BisI GCNGC 3 cut(s) 134, 234, 354
BlsI GCNGC 3 cut(s) 135, 235, 355
BmiI GGNNCC 1 cut(s) 257
BmsI GCATC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 145, 245, 340
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 325
Bst6I CTCTTC 2 cut(s) 60, 360
BstC8I GCNNGC 2 cut(s) 216, 260
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 145, 245, 340
BsuRI GGCC 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 216, 260
CviAII CATG 1 cut(s) 248
CviJI RGCY 8 cut(s) 31, 136, 166, 218, 224, 324, 353, 370
CviKI_1 RGCY 8 cut(s) 31, 136, 166, 218, 224, 324, 353, 370
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 60, 360
EarI CTCTTC 2 cut(s) 60, 360
Eco130I CCWWGG 1 cut(s) 325
EcoRI GAATTC 2 cut(s) 51, 181
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 1 cut(s) 251
FaiI YATR 5 cut(s) 48, 249, 306, 308, 363
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 134, 234, 354
Fsp4HI GCNGC 3 cut(s) 134, 234, 354
FspBI CTAG 1 cut(s) 371
GluI GCNGC 3 cut(s) 134, 234, 354
HaeIII GGCC 1 cut(s) 324
Hin1II CATG 1 cut(s) 251
HinfI GANTC 2 cut(s) 71, 313
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 153
HpyAV CCTTC 2 cut(s) 203, 246
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 25
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 82, 126, 272
Lsp1109I GCAGC 3 cut(s) 145, 245, 340
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 4 cut(s) 77, 177, 293, 377
MluCI AATT 2 cut(s) 51, 181
MnlI CCTC 3 cut(s) 61, 197, 292
MseI TTAA 2 cut(s) 81, 122
MspA1I CMGCKG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 71, 313
PkrI GCNGC 3 cut(s) 135, 235, 355
PshBI ATTAAT 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 81, 122
SatI GCNGC 3 cut(s) 134, 234, 354
Sau3AI GATC 1 cut(s) 25
SetI ASST 9 cut(s) 33, 138, 147, 208, 220, 245, 257, 303, 372
SfaNI GCATC 1 cut(s) 31
Sse9I AATT 2 cut(s) 51, 181
SspI AATATT 2 cut(s) 85, 347
SspMI CTAG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 325
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 16, 168
TasI AATT 2 cut(s) 51, 181
TfiI GAWTC 2 cut(s) 71, 313
Tru1I TTAA 2 cut(s) 81, 122
Tru9I TTAA 2 cut(s) 81, 122
TseI GCWGC 3 cut(s) 133, 233, 353
TspDTI ATGAA 3 cut(s) 78, 207, 378
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 2 cut(s) 51, 181
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.