AT3G24040

Core-2/I-Branching enzyme

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8680877 .. 8683289
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24040.1

Sequence Viewer

Length: 1254 bp
ATGCAGCACACACCGGAGCAACCGAGAGTCACTCTTTACATAATCCTCACCACCGCGTTTCTCTCTCTATGTTTCCTCCTCTCTCTCTCTTCCTCTTCCCAGTACTCTTCATCTTCCTACACCGGACGACCCGATGATCTACGACCCGACCCGAGACTCTTTCCTTCTTCCTCCAAAATCGCCGCCGATACAGCTCCTCCTTCAATCGCTTACCTAATTTCCGGATCTTCTGGTGACACGCGACGAATCCTTCGACTTCTCTACGCTACTTACCATCCTCGAAATCGATATCTTCTTCATCTCGATAGCTTAGCGACACAATCTGAACGAGATCGGCTCGCTGTTGATGTACAAGATGTACCGATTTTTAGAGCTGCAAGGAATGTTGATGTTATTGGGAAGCCTGATTTCGCGTATCAGAGAGGATCGTCTCCGATGGCTTCTACGCTTCATGGTGCTTCGATTCTTCTTAGATTGTCAGGAACTTGGGATTGGTTTGTTAGTATTAGTGTTGATGATTATCCTCTCGTTACTCAAGATGAGCTTCTTCATATTATGTCACATTTGCCTAAGGACTTGAATTTTGTGAACCACACTAGCTACATTGGTTGGAAAGAGTCCAGGAAGTTGAAGCCAGTTATTGTTGATCCAGGGCTCTATCTTGTGGAGAAAACCGATATGTTTTTCGCTTCGCAGAAACGAGAGTTGCCTAAGGCTTTCAAGTTATTCTCAGGTCCATCTTTCTCCATCTTAAGCCGGAATTTCATGGAGCACTGTGTCTTAGGCACTGACAACTTCCCTCGGACTCTACTCATGTACTTGTCCAACACACCTGATTCTCTTTCCAACTACTTCCCAACTATCCTCTGCAACACGGATACCTTCAAAAAGACCATCATGAACAACAACTTACTCTACCTAGCTTCTAACGACACTTCTAAAGAAAGATACCATCAGCTTGATCACAAAGAGTTCACAGAAATGGTTGACTCCGGAGCAGCTTTTGCAAGAGGATTCAGGTACGACGACACTGTCCTTGATCGCATCGATCATGAACTTCTGGGACGCAAACCTGGTGAAGTTGTGCCTGGTGGTTGGTGTTTAGGAGATTCTAGTAAAAACCGTAGCTCGTGTTCCGTCTGGGGTGACTCGGGTATCCTTCGGCCCGGTTCTGGTTCCGATAGGCTCGAGAGACGAATTGTTGAGTTACTATCAAACGATTGGTTCAGATTGCACCAATGCGTACCTGAATGA

Protein Analysis

417

Amino Acids

47.19

Weight (kDa)

6.87

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 69 - 328 8.8e-65 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1031
AccII CGCG 3 cut(s) 56, 241, 413
AccIII TCCGGA 2 cut(s) 221, 992
AciI CCGC 2 cut(s) 54, 183
AclWI GGATC 3 cut(s) 232, 433, 641
AcsI RAATTY 2 cut(s) 580, 760
AfaI GTAC 6 cut(s) 104, 351, 360, 818, 1022, 1245
AfiI CCNNNNNNNGG 1 cut(s) 1172
AflII CTTAAG 1 cut(s) 751
AgsI TTSAA 5 cut(s) 204, 580, 631, 721, 886
AjnI CCWGG 4 cut(s) 620, 649, 1072, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AluBI AGCT 9 cut(s) 194, 309, 374, 544, 600, 923, 958, 1001, 1128
AluI AGCT 9 cut(s) 194, 309, 374, 544, 600, 923, 958, 1001, 1128
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 3 cut(s) 148, 435, 1186
AlwI GGATC 3 cut(s) 232, 433, 641
Ama87I CYCGRG 3 cut(s) 151, 1150, 1187
Aor13HI TCCGGA 2 cut(s) 221, 992
AoxI GGCC 1 cut(s) 1163
ApeKI GCWGC 3 cut(s) 4, 374, 998
ApoI RAATTY 2 cut(s) 580, 760
ArsI GACNNNNNNTTYG 4 cut(s) 234, 266, 566, 598
AspS9I GGNCC 2 cut(s) 734, 1164
AsuC2I CCSGG 1 cut(s) 1167
AsuHPI GGTGA 4 cut(s) 40, 245, 1088, 1157
AvaI CYCGRG 3 cut(s) 151, 1150, 1187
AvaII GGWCC 1 cut(s) 734
AxyI CCTNAGG 2 cut(s) 570, 711
BaeI ACNNNNGTAYC 2 cut(s) 1138, 1171
BanII GRGCYC 1 cut(s) 657
BauI CACGAG 1 cut(s) 1129
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 16, 361, 1010
BccI CCATC 6 cut(s) 282, 430, 745, 755, 902, 960
BciT130I CCWGG 4 cut(s) 622, 651, 1074, 1089
BciVI GTATCC 2 cut(s) 871, 1166
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 1 cut(s) 1167
BcoDI GTCTC 3 cut(s) 148, 435, 1186
BfaI CTAG 3 cut(s) 597, 920, 1113
BfrI CTTAAG 1 cut(s) 751
BfuI GTATCC 2 cut(s) 871, 1166
BisI GCNGC 4 cut(s) 5, 183, 375, 999
BlpI GCTNAGC 1 cut(s) 310
BlsI GCNGC 4 cut(s) 6, 184, 376, 1000
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 5 cut(s) 622, 651, 1074, 1089, 1167
Bme18I GGWCC 1 cut(s) 734
BmeT110I CYCGRG 3 cut(s) 151, 1150, 1187
BmgT120I GGNCC 2 cut(s) 734, 1164
BmiI GGNNCC 1 cut(s) 1177
BmrFI CCNGG 5 cut(s) 622, 651, 1074, 1089, 1167
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 1053
BmuI ACTGGG 1 cut(s) 94
BplI GAGNNNNNCTC 4 cut(s) 16, 48, 321, 353
Bpu1102I GCTNAGC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 1167
Bsa29I ATCGAT 2 cut(s) 286, 1047
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 650, 800
BsaWI WCCGGW 4 cut(s) 13, 122, 221, 992
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 1172
Bse1I ACTGG 2 cut(s) 100, 635
Bse21I CCTNAGG 2 cut(s) 570, 711
Bse8I GATNNNNATC 1 cut(s) 519
BseAI TCCGGA 2 cut(s) 221, 992
BseBI CCWGG 4 cut(s) 622, 651, 1074, 1089
BseCI ATCGAT 2 cut(s) 286, 1047
BseDI CCNNGG 2 cut(s) 650, 800
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 1172
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 2 cut(s) 100, 635
BseRI GAGGAG 2 cut(s) 68, 186
BseXI GCAGC 3 cut(s) 16, 361, 1010
Bsh1236I CGCG 3 cut(s) 56, 241, 413
BshFI GGCC 1 cut(s) 1165
BshVI ATCGAT 2 cut(s) 286, 1047
BsiHKAI GWGCWC 1 cut(s) 774
BsiHKCI CYCGRG 3 cut(s) 151, 1150, 1187
BsiSI CCGG 6 cut(s) 14, 123, 222, 757, 993, 1167
BslFI GGGAC 1 cut(s) 1077
BslI CCNNNNNNNGG 1 cut(s) 1172
BsmAI GTCTC 3 cut(s) 148, 435, 1186
BsmBI CGTCTC 2 cut(s) 435, 1186
BsmFI GGGAC 1 cut(s) 1077
BsnI GGCC 1 cut(s) 1165
BsoBI CYCGRG 3 cut(s) 151, 1150, 1187
Bsp1286I GDGCHC 2 cut(s) 657, 774
Bsp13I TCCGGA 2 cut(s) 221, 992
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
Bsp1720I GCTNAGC 1 cut(s) 310
BspACI CCGC 2 cut(s) 54, 183
BspANI GGCC 1 cut(s) 1165
BspCNI CTCAG 1 cut(s) 743
BspDI ATCGAT 2 cut(s) 286, 1047
BspEI TCCGGA 2 cut(s) 221, 992
BspFNI CGCG 3 cut(s) 56, 241, 413
BspHI TCATGA 2 cut(s) 897, 1051
BspLI GGNNCC 1 cut(s) 1177
BspPI GGATC 3 cut(s) 232, 433, 641
BspTI CTTAAG 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 2 cut(s) 100, 635
BssECI CCNNGG 2 cut(s) 650, 800
BssMI GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
BssSI CACGAG 1 cut(s) 1129
Bst2BI CACGAG 1 cut(s) 1129
Bst2UI CCWGG 4 cut(s) 622, 651, 1074, 1089
Bst4CI ACNGT 3 cut(s) 776, 1033, 1124
Bst6I CTCTTC 3 cut(s) 94, 100, 112
BstAFI CTTAAG 1 cut(s) 751
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 6 cut(s) 310, 470, 570, 711, 730, 781
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 3 cut(s) 56, 241, 413
BstKTI GATC 8 cut(s) 139, 227, 334, 428, 649, 964, 1042, 1051
BstMAI GTCTC 3 cut(s) 148, 435, 1186
BstMBI GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 191, 1004
BstNI CCWGG 4 cut(s) 622, 651, 1074, 1089
BstSCI CCNGG 5 cut(s) 620, 649, 1072, 1087, 1165
BstUI CGCG 3 cut(s) 56, 241, 413
BstV1I GCAGC 3 cut(s) 16, 361, 1010
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 2 cut(s) 286, 1047
Bsu36I CCTNAGG 2 cut(s) 570, 711
BsuI GTATCC 2 cut(s) 871, 1166
BsuRI GGCC 1 cut(s) 1165
BsuTUI ATCGAT 2 cut(s) 286, 1047
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 3 cut(s) 772, 786, 1029
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 2 cut(s) 897, 1051
Cfr13I GGNCC 2 cut(s) 734, 1164
ClaI ATCGAT 2 cut(s) 286, 1047
CseI GACGC 1 cut(s) 1074
CsiI ACCWGGT 1 cut(s) 1072
Csp6I GTAC 6 cut(s) 103, 350, 359, 817, 1021, 1244
CviAII CATG 5 cut(s) 452, 766, 814, 898, 1052
CviQI GTAC 6 cut(s) 103, 350, 359, 817, 1021, 1244
DdeI CTNAG 6 cut(s) 310, 470, 570, 711, 730, 781
DpnI GATC 8 cut(s) 138, 226, 333, 427, 648, 963, 1041, 1050
DpnII GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
DrdI GACNNNNNNGTC 1 cut(s) 1031
DseDI GACNNNNNNGTC 1 cut(s) 1031
Eam1104I CTCTTC 3 cut(s) 94, 100, 112
EarI CTCTTC 3 cut(s) 94, 100, 112
Eco24I GRGCYC 1 cut(s) 657
Eco32I GATATC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 734
Eco81I CCTNAGG 2 cut(s) 570, 711
Eco88I CYCGRG 3 cut(s) 151, 1150, 1187
EcoRII CCWGG 4 cut(s) 620, 649, 1072, 1087
EcoRV GATATC 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 657
Esp3I CGTCTC 2 cut(s) 435, 1186
FaeI CATG 5 cut(s) 455, 769, 817, 901, 1055
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 1 cut(s) 1077
FatI CATG 5 cut(s) 451, 765, 813, 897, 1051
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 4 cut(s) 5, 183, 375, 999
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 4 cut(s) 5, 183, 375, 999
FspBI CTAG 3 cut(s) 597, 920, 1113
GluI GCNGC 4 cut(s) 5, 183, 375, 999
HaeIII GGCC 1 cut(s) 1165
HapII CCGG 6 cut(s) 14, 123, 222, 757, 993, 1167
HgaI GACGC 1 cut(s) 1074
Hin1II CATG 5 cut(s) 455, 769, 817, 901, 1055
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HpaII CCGG 6 cut(s) 14, 123, 222, 757, 993, 1167
HphI GGTGA 4 cut(s) 40, 245, 1088, 1157
Hpy166II GTNNAC 3 cut(s) 589, 975, 988
Hpy188I TCNGA 6 cut(s) 325, 420, 435, 804, 1180, 1229
Hpy188III TCNNGA 8 cut(s) 222, 302, 480, 536, 898, 993, 1052, 1189
Hpy8I GTNNAC 3 cut(s) 589, 975, 988
Hpy99I CGWCG 2 cut(s) 246, 1028
HpyAV CCTTC 5 cut(s) 174, 210, 260, 892, 1169
HpyCH4III ACNGT 3 cut(s) 776, 1033, 1124
HpyCH4V TGCA 5 cut(s) 4, 377, 870, 1007, 1234
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 1004
HpyF3I CTNAG 6 cut(s) 310, 470, 570, 711, 730, 781
Hsp92II CATG 5 cut(s) 455, 769, 817, 901, 1055
Kpn2I TCCGGA 2 cut(s) 221, 992
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
LmnI GCTCC 4 cut(s) 16, 199, 769, 995
Lsp1109I GCAGC 3 cut(s) 16, 361, 1010
LweI GCATC 1 cut(s) 1053
MabI ACCWGGT 1 cut(s) 1072
MaeI CTAG 3 cut(s) 597, 920, 1113
MaeIII GTNAC 6 cut(s) 28, 233, 529, 558, 1145, 1206
MalI GATC 8 cut(s) 138, 226, 333, 427, 648, 963, 1041, 1050
MboI GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 657, 774
MluCI AATT 4 cut(s) 216, 580, 760, 1197
MlyI GAGTC 6 cut(s) 36, 150, 626, 799, 983, 1142
MmeI TCCRAC 3 cut(s) 590, 849, 870
MroI TCCGGA 2 cut(s) 221, 992
MseI TTAA 1 cut(s) 752
MslI CAYNNNNRTG 1 cut(s) 980
MspCI CTTAAG 1 cut(s) 751
MspI CCGG 6 cut(s) 14, 123, 222, 757, 993, 1167
MspR9I CCNGG 5 cut(s) 622, 651, 1074, 1089, 1167
MvaI CCWGG 4 cut(s) 622, 651, 1074, 1089
MvnI CGCG 3 cut(s) 56, 241, 413
MwoI GCNNNNNNNGC 2 cut(s) 191, 1004
NciI CCSGG 1 cut(s) 1167
NdeII GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
NlaIII CATG 5 cut(s) 455, 769, 817, 901, 1055
NlaIV GGNNCC 1 cut(s) 1177
NmuCI GTSAC 4 cut(s) 28, 233, 558, 1145
PaeR7I CTCGAG 1 cut(s) 1187
PagI TCATGA 2 cut(s) 897, 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PfeI GAWTC 5 cut(s) 246, 463, 836, 1014, 1109
PflFI GACNNNGTC 1 cut(s) 1031
PfoI TCCNGGA 1 cut(s) 620
PkrI GCNGC 4 cut(s) 6, 184, 376, 1000
PleI GAGTC 6 cut(s) 35, 150, 625, 799, 983, 1142
PpsI GAGTC 6 cut(s) 35, 150, 625, 799, 983, 1142
Psp6I CCWGG 4 cut(s) 620, 649, 1072, 1087
PspGI CCWGG 4 cut(s) 620, 649, 1072, 1087
PspN4I GGNNCC 1 cut(s) 1177
PspPI GGNCC 2 cut(s) 734, 1164
PsrI GAACNNNNNNTAC 2 cut(s) 1117, 1149
PsuI RGATCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 1031
RsaI GTAC 6 cut(s) 104, 351, 360, 818, 1022, 1245
RsaNI GTAC 6 cut(s) 103, 350, 359, 817, 1021, 1244
RseI CAYNNNNRTG 1 cut(s) 980
SaqAI TTAA 1 cut(s) 752
SatI GCNGC 4 cut(s) 5, 183, 375, 999
Sau3AI GATC 8 cut(s) 136, 224, 331, 425, 646, 961, 1039, 1048
Sau96I GGNCC 2 cut(s) 734, 1164
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 6 cut(s) 36, 150, 626, 799, 983, 1142
ScrFI CCNGG 5 cut(s) 622, 651, 1074, 1089, 1167
SduI GDGCHC 2 cut(s) 657, 774
SexAI ACCWGGT 1 cut(s) 1072
SfaNI GCATC 1 cut(s) 1053
Sfr274I CTCGAG 1 cut(s) 1187
SinI GGWCC 1 cut(s) 734
SlaI CTCGAG 1 cut(s) 1187
SmiMI CAYNNNNRTG 1 cut(s) 980
SmlI CTYRAG 3 cut(s) 534, 751, 1187
SmoI CTYRAG 3 cut(s) 534, 751, 1187
Sse9I AATT 4 cut(s) 216, 580, 760, 1197
SsiI CCGC 2 cut(s) 54, 183
SspMI CTAG 3 cut(s) 597, 920, 1113
StyD4I CCNGG 5 cut(s) 620, 649, 1072, 1087, 1165
TaaI ACNGT 3 cut(s) 776, 1033, 1124
TaqI TCGA 7 cut(s) 253, 280, 286, 303, 461, 1047, 1188
TasI AATT 4 cut(s) 216, 580, 760, 1197
TatI WGTACW 3 cut(s) 102, 349, 816
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 5 cut(s) 246, 463, 836, 1014, 1109
Tru1I TTAA 1 cut(s) 752
Tru9I TTAA 1 cut(s) 752
TscAI CASTG 3 cut(s) 779, 793, 1036
TseFI GTSAC 4 cut(s) 28, 233, 558, 1145
TseI GCWGC 3 cut(s) 4, 374, 998
Tsp45I GTSAC 4 cut(s) 28, 233, 558, 1145
TspDTI ATGAA 7 cut(s) 99, 287, 440, 539, 754, 914, 1068
TspGWI ACGGA 2 cut(s) 890, 1126
TspRI CASTG 3 cut(s) 779, 793, 1036
Tth111I GACNNNGTC 1 cut(s) 1031
Vha464I CTTAAG 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 2 cut(s) 580, 760
XhoI CTCGAG 1 cut(s) 1187
XspI CTAG 3 cut(s) 597, 920, 1113
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.