MD13G1229300.v1.1

Xylosyltransferase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
22474171 .. 22477592
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1229300.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGTCATCGGATCGTCCTCCATCCACCACACTCTCAGAGTACCTAGCAATGCAAAACTCTACCCCATCGCCACCACCACAAACACCGTCTCCATTTCTCTCCTCCACACCCACCACCGCCTCCTCCGCTGCCATTCCCATCCTCTCAATCAAAGACCCCAAAACCCTCCTCTCAATCATCATCGTCTTTTCCATTTTCGCCCTCCTCCTCTTCCTCTCCTCCTCCTCCTCCTCCTCGTCATTCTCCTCCTCCGCTGCCTCCCGCCATTATCGACCCGACCCATTTCTCTTTCCCAACCAGCAAGCCCACCGCATCATCTACCACGACAACAACTCCTCAGATCCCACGCCTCCCTCCATCGCCTACCTCTTATCCGGGTCAAAAGGGGACTTGGGTCGGATCCTGAGACTTCTCCACGCCGCCTACCACCCCAGAAACCAGTATCTCCTCCACCTCGACCGCTCTGCCTCCGATTCCGAGAGGGAAAAGTTGGCTCTCAGAGTCCAATCACTGCCCATTTTCAGAGCTGCCCAGAATGTCCATGTCATTGGTAATGCCGATTTTGTGTACCCAACTGGCTCTTCTGCTATCTCCTTTACGCTCCATGGCGCCTCGATACTGCTGCGTCTTTCGCCCAATTGGGATTGGTTTATCAGCCTCAGTGTTCGTGATTACCCACTAATCACACAAGATGATCTTCTTCACATTATGTCATTCCTGCCGAAAGATCTAAACTTTGTGAACCATTCAAGTTATATCGGCTGGAGAGAGTCTAGGAGATTGAGACCGATAATTGTTGACCCGGGGCTTTATCTTTCGGAGAAAACTGACATGTTTTATGCTACACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTCACAGGTTCTTCTTTTACGATTCTAAGTCGTAATTTCATTGAATTTTGTGTTGTTGGTATTGAAAACCTGCCAAGGACTTTGTTTGATGTACTTCTCTCAAACACACCTTCTGCTCTTTCGAATTACTTCCCCACCATTCTTTGCAACTCCCAGCAGTTCAATAAGACTATCATAAACCACAACTTGGTATATGCTAATTCCGACACACCCCCTAGAGAGAAGCCCCAGCCAATCAGTTCCACTGGTTATGATGCTATGATTCAGCATGGAGCTGCCTTTGCCACTGGACTTCAGTTAGACGATCCAATCCTTGACCGAGTGGACAGAGAAGTTTTAAAACGCAGACGAGGAAAAGTTGTTCCTGGAGGCTGGTGTTTAGGTGGGTTTGCAAATGACACATGTTCAGTGTGGGGGATGCTGATATTTTGA

Protein Analysis

437

Amino Acids

48.57

Weight (kDa)

8.95

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 120 - 369 1.7e-56 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 1066
AccBSI CCGCTC 1 cut(s) 462
AciI CCGC 7 cut(s) 117, 126, 252, 262, 310, 420, 460
AclWI GGATC 5 cut(s) 18, 335, 394, 407, 1178
AcsI RAATTY 1 cut(s) 923
AcuI CTGAAG 1 cut(s) 1157
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 3 cut(s) 41, 569, 972
AfiI CCNNNNNNNGG 1 cut(s) 1066
AflIII ACRYGT 2 cut(s) 831, 1280
AgeI ACCGGT 1 cut(s) 873
AgsI TTSAA 4 cut(s) 750, 923, 944, 1042
AjnI CCWGG 1 cut(s) 1243
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AloI GAACNNNNNNTCC 2 cut(s) 1224, 1256
AluBI AGCT 2 cut(s) 527, 1154
AluI AGCT 2 cut(s) 527, 1154
Alw26I GTCTC 3 cut(s) 93, 400, 778
AlwI GGATC 5 cut(s) 18, 335, 394, 407, 1178
Ama87I CYCGRG 1 cut(s) 802
ApeKI GCWGC 5 cut(s) 128, 254, 527, 622, 1154
ApoI RAATTY 1 cut(s) 923
AsiGI ACCGGT 1 cut(s) 873
Asp700I GAANNNNTTC 1 cut(s) 1007
AspLEI GCGC 1 cut(s) 611
AsuC2I CCSGG 3 cut(s) 376, 803, 804
AsuII TTCGAA 1 cut(s) 1001
AvaI CYCGRG 1 cut(s) 802
BamHI GGATCC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 608
BbvI GCAGC 5 cut(s) 115, 241, 514, 609, 1141
BccI CCATC 4 cut(s) 28, 73, 146, 365
BcgI CGANNNNNNTGC 4 cut(s) 446, 480, 604, 638
BciT130I CCWGG 1 cut(s) 1245
BcnI CCSGG 3 cut(s) 376, 803, 804
BcoDI GTCTC 3 cut(s) 93, 400, 778
BfaI CTAG 3 cut(s) 44, 774, 1095
BfoI RGCGCY 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 957
BglII AGATCT 1 cut(s) 727
BisI GCNGC 6 cut(s) 129, 255, 420, 528, 623, 1155
BlsI GCNGC 6 cut(s) 130, 256, 421, 529, 624, 1156
Bme1390I CCNGG 4 cut(s) 376, 803, 804, 1245
BmeT110I CYCGRG 1 cut(s) 802
BmiI GGNNCC 2 cut(s) 401, 610
BmrFI CCNGG 4 cut(s) 376, 803, 804, 1245
BmsI GCATC 3 cut(s) 321, 1123, 1287
BoxI GACNNNNGTC 1 cut(s) 393
BpmI CTGGAG 2 cut(s) 784, 1266
Bpu14I TTCGAA 1 cut(s) 1001
BpuMI CCSGG 3 cut(s) 376, 803, 804
BsaHI GRCGYC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 4 cut(s) 604, 802, 803, 953
BsaWI WCCGGW 1 cut(s) 873
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 1066
Bse118I RCCGGY 1 cut(s) 873
Bse1I ACTGG 4 cut(s) 439, 580, 1129, 1171
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 1245
BseDI CCNNGG 4 cut(s) 604, 802, 803, 953
BseGI GGATG 3 cut(s) 20, 138, 1302
BseLI CCNNNNNNNGG 1 cut(s) 1066
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 5 cut(s) 48, 351, 395, 511, 673
BseNI ACTGG 4 cut(s) 439, 580, 1129, 1171
BseXI GCAGC 5 cut(s) 115, 241, 514, 609, 1141
BseYI CCCAGC 2 cut(s) 1032, 1107
Bsh1285I CGRYCG 1 cut(s) 460
BshNI GGYRCC 1 cut(s) 608
BshTI ACCGGT 1 cut(s) 873
BsiEI CGRYCG 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 3 cut(s) 375, 803, 874
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 1066
BsmAI GTCTC 3 cut(s) 93, 400, 778
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 1001
Bsp143I GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 7 cut(s) 117, 126, 252, 262, 310, 420, 460
BspCNI CTCAG 5 cut(s) 47, 350, 396, 510, 672
BspLI GGNNCC 2 cut(s) 401, 610
BspMI ACCTGC 1 cut(s) 957
BspPI GGATC 5 cut(s) 18, 335, 394, 407, 1178
BspQI GCTCTTC 1 cut(s) 586
BspT104I TTCGAA 1 cut(s) 1001
BspT107I GGYRCC 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 873
BsrI ACTGG 4 cut(s) 439, 580, 1129, 1171
BssAI RCCGGY 1 cut(s) 873
BssECI CCNNGG 4 cut(s) 604, 802, 803, 953
BssMI GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
BssNI GRCGYC 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 604, 953
Bst2UI CCWGG 1 cut(s) 1245
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 215, 586
BstACI GRCGYC 1 cut(s) 609
BstBI TTCGAA 1 cut(s) 1001
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 6 cut(s) 34, 337, 404, 497, 659, 905
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 3 cut(s) 20, 138, 1302
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 6 cut(s) 13, 343, 402, 697, 730, 1186
BstMAI GTCTC 3 cut(s) 93, 400, 778
BstMBI GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 3 cut(s) 125, 631, 1160
BstNI CCWGG 1 cut(s) 1245
BstNSI RCATGY 2 cut(s) 835, 1284
BstPAI GACNNNNGTC 1 cut(s) 393
BstSCI CCNGG 4 cut(s) 374, 801, 802, 1243
BstV1I GCAGC 5 cut(s) 115, 241, 514, 609, 1141
BstX2I RGATCY 3 cut(s) 340, 399, 727
BstXI CCANNNNNNTGG 1 cut(s) 548
BstYI RGATCY 3 cut(s) 340, 399, 727
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 2 cut(s) 51, 343
BtsCI GGATG 3 cut(s) 20, 138, 1302
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 5 cut(s) 509, 667, 1122, 1164, 1293
BveI ACCTGC 1 cut(s) 957
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 873
Cfr9I CCCGGG 1 cut(s) 802
CseI GACGC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 40, 568, 971
CspAI ACCGGT 1 cut(s) 873
CviAII CATG 5 cut(s) 542, 605, 832, 1148, 1281
CviQI GTAC 3 cut(s) 40, 568, 971
DdeI CTNAG 6 cut(s) 34, 337, 404, 497, 659, 905
DinI GGCGCC 1 cut(s) 610
DpnI GATC 6 cut(s) 12, 342, 401, 696, 729, 1185
DpnII GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
DraI TTTAAA 1 cut(s) 1218
Eam1104I CTCTTC 2 cut(s) 215, 586
EarI CTCTTC 2 cut(s) 215, 586
Eco130I CCWWGG 2 cut(s) 604, 953
Eco31I GGTCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 1157
Eco88I CYCGRG 1 cut(s) 802
EcoRII CCWGG 1 cut(s) 1243
EcoT14I CCWWGG 2 cut(s) 604, 953
EgeI GGCGCC 1 cut(s) 610
EheI GGCGCC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 604, 953
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 5 cut(s) 545, 608, 835, 1151, 1284
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 541, 604, 831, 1147, 1280
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 6 cut(s) 129, 255, 420, 528, 623, 1155
FokI GGATG 2 cut(s) 7, 125
Fsp4HI GCNGC 6 cut(s) 129, 255, 420, 528, 623, 1155
FspBI CTAG 3 cut(s) 44, 774, 1095
GlaI GCGC 1 cut(s) 610
GluI GCNGC 6 cut(s) 129, 255, 420, 528, 623, 1155
GsaI CCCAGC 2 cut(s) 1036, 1111
GsuI CTGGAG 2 cut(s) 784, 1266
HaeII RGCGCY 1 cut(s) 612
HapII CCGG 3 cut(s) 375, 803, 874
HgaI GACGC 1 cut(s) 614
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 5 cut(s) 545, 608, 835, 1151, 1284
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 5 cut(s) 473, 501, 770, 901, 1141
HpaII CCGG 3 cut(s) 375, 803, 874
Hpy166II GTNNAC 5 cut(s) 568, 742, 799, 882, 1204
Hpy188III TCNNGA 2 cut(s) 403, 668
Hpy8I GTNNAC 5 cut(s) 568, 742, 799, 882, 1204
HpyAV CCTTC 1 cut(s) 999
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 52, 1026, 1271
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 631, 1160
HpyF3I CTNAG 6 cut(s) 34, 337, 404, 497, 659, 905
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 5 cut(s) 545, 608, 835, 1151, 1284
HspAI GCGC 1 cut(s) 609
KasI GGCGCC 1 cut(s) 608
Kzo9I GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
LguI GCTCTTC 1 cut(s) 586
LmnI GCTCC 2 cut(s) 606, 1151
Lsp1109I GCAGC 5 cut(s) 115, 241, 514, 609, 1141
LweI GCATC 3 cut(s) 321, 1123, 1287
MaeI CTAG 3 cut(s) 44, 774, 1095
MalI GATC 6 cut(s) 12, 342, 401, 696, 729, 1185
MbiI CCGCTC 1 cut(s) 462
MboI GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
MboII GAAGA 5 cut(s) 202, 573, 689, 692, 882
MfeI CAATTG 1 cut(s) 637
MflI RGATCY 3 cut(s) 340, 399, 727
MluCI AATT 6 cut(s) 637, 792, 913, 923, 1003, 1078
Mly113I GGCGCC 1 cut(s) 609
MlyI GAGTC 2 cut(s) 510, 779
MmeI TCCRAC 2 cut(s) 377, 1107
MroXI GAANNNNTTC 1 cut(s) 1007
MseI TTAA 1 cut(s) 1217
MspA1I CMGCKG 2 cut(s) 128, 254
MspI CCGG 3 cut(s) 375, 803, 874
MspR9I CCNGG 4 cut(s) 376, 803, 804, 1245
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 1245
MwoI GCNNNNNNNGC 3 cut(s) 125, 631, 1160
NarI GGCGCC 1 cut(s) 609
NciI CCSGG 3 cut(s) 376, 803, 804
NcoI CCATGG 1 cut(s) 604
NdeII GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
NlaIII CATG 5 cut(s) 545, 608, 835, 1151, 1284
NlaIV GGNNCC 2 cut(s) 401, 610
NspI RCATGY 2 cut(s) 835, 1284
NspV TTCGAA 1 cut(s) 1001
PciI ACATGT 2 cut(s) 831, 1280
PciSI GCTCTTC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 3 cut(s) 473, 901, 1141
PflMI CCANNNNNTGG 1 cut(s) 1066
PfoI TCCNGGA 1 cut(s) 1243
PinAI ACCGGT 1 cut(s) 873
PkrI GCNGC 6 cut(s) 130, 256, 421, 529, 624, 1156
PleI GAGTC 2 cut(s) 509, 778
PluTI GGCGCC 1 cut(s) 612
PpsI GAGTC 2 cut(s) 509, 778
PscI ACATGT 2 cut(s) 831, 1280
PshAI GACNNNNGTC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 1243
PspFI CCCAGC 2 cut(s) 1032, 1107
PspGI CCWGG 1 cut(s) 1243
PspN4I GGNNCC 2 cut(s) 401, 610
PsuI RGATCY 3 cut(s) 340, 399, 727
RsaI GTAC 3 cut(s) 41, 569, 972
RsaNI GTAC 3 cut(s) 40, 568, 971
SapI GCTCTTC 1 cut(s) 586
SaqAI TTAA 1 cut(s) 1217
SatI GCNGC 6 cut(s) 129, 255, 420, 528, 623, 1155
Sau3AI GATC 6 cut(s) 10, 340, 399, 694, 727, 1183
SchI GAGTC 2 cut(s) 510, 779
ScrFI CCNGG 4 cut(s) 376, 803, 804, 1245
SetI ASST 9 cut(s) 45, 369, 456, 529, 889, 951, 991, 1156, 1264
SfaNI GCATC 3 cut(s) 321, 1123, 1287
SfoI GGCGCC 1 cut(s) 610
SfuI TTCGAA 1 cut(s) 1001
SmaI CCCGGG 1 cut(s) 804
Sse9I AATT 6 cut(s) 637, 792, 913, 923, 1003, 1078
SsiI CCGC 7 cut(s) 117, 126, 252, 262, 310, 420, 460
SspDI GGCGCC 1 cut(s) 608
SspMI CTAG 3 cut(s) 44, 774, 1095
StyD4I CCNGG 4 cut(s) 374, 801, 802, 1243
StyI CCWWGG 2 cut(s) 604, 953
TaaI ACNGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 271, 456, 614, 1001
TaqII GACCGA 2 cut(s) 802, 1212
TasI AATT 6 cut(s) 637, 792, 913, 923, 1003, 1078
TatI WGTACW 1 cut(s) 970
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 3 cut(s) 473, 901, 1141
Tru1I TTAA 1 cut(s) 1217
Tru9I TTAA 1 cut(s) 1217
TscAI CASTG 5 cut(s) 516, 667, 1129, 1171, 1293
TseI GCWGC 5 cut(s) 128, 254, 527, 622, 1154
TspDTI ATGAA 1 cut(s) 907
TspMI CCCGGG 1 cut(s) 802
TspRI CASTG 5 cut(s) 516, 667, 1129, 1171, 1293
Van91I CCANNNNNTGG 1 cut(s) 1066
XapI RAATTY 1 cut(s) 923
XceI RCATGY 2 cut(s) 835, 1284
XmaI CCCGGG 1 cut(s) 802
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 3 cut(s) 44, 774, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.