Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

12289826 .. 12306479

Gene Structure 16654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG128700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGTATGAGAGGCCTGAGACGCAAAGCAGCACCACCGGGTCTAAAGGCAAGTTGGGCCGGATCCTCTGCCTCCTCTACGCCACCTACCACCCCAGAAATCAATACCTCCTCCACCTCGACCGCTTTGCTTCCCAGACTGACCGTGACCAGTTAGCCCTCAAGGTCAGATCTGTTCCCATTTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAAAGCTGACTTTGTCTACCGAAAAGGGTTGTCTTCGATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAACCAATTGGGACTGGTTCATAAGCTTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTCCTGCCCAAAGATCTGAACTTTGTGAATCATTCGAGTTACATTGGCTGGAAAGAGTCGAAGAGATTGAAACAGGTCATTGTTGATCTGGAGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCGGTACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGTGAGAAAACTGGCAACTCAAGTGGAGAAGCTATCCCATCTGGTCTGCCAGGAGGACTTGAACAACTTTGAAAGTGATCCGGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCTGAAGATGGTATGGGCTGGAACATGGAGAAGAGGACATTGTTTCGTAGATGGACTAGAACATGGAGAAAAGATCAGTGCATACCACACTGTTTCTTATTCTACAGATGCACAATTCCAGAAATCTACATTGCTATGAGAACCTTGGTGTTTCTCTCTCGAATCCAAGCTCATCAGCCCTCAAACTTTGTTGCTGTCACTCCCGCTGTCGTCAGATGGGCTCTGGCCGTAGGCGACAATGGTAGATGGGAGGAGGAAGGAAAGTTCAGGGGCGCTGAGGGGTGGGGTTTCGGATCTTGCAGACCTAGAGGGGTTGGGATTTGGAACTTGGTTGCTGGTTTGGGGTCGGAGGAGATTGAAACGGATCTCGACCTTCAGTTTGGGGGAGTCGGCGCGATCTGGGCGGTGGTGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

364

Amino Acids

41.88

Weight (kDa)

8.1

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	13 - 181	1e-29	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	2 cut(s)	275, 1070
AccIII	TCCGGA	1 cut(s)	628
AciI	CCGC	5 cut(s)	124, 192, 506, 879, 1079
AclWI	GGATC	5 cut(s)	58, 71, 620, 976, 1047
AcoI	YGGCCR	1 cut(s)	900
AcuI	CTGAAG	2 cut(s)	699, 1034
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	683
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	448, 610, 620, 1034
AjnI	CCWGG	1 cut(s)	597
AloI	GAACNNNNNNTCC	2 cut(s)	923, 955
AluBI	AGCT	5 cut(s)	221, 321, 472, 580, 845
AluI	AGCT	5 cut(s)	221, 321, 472, 580, 845
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	5 cut(s)	58, 71, 620, 976, 1047
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	3 cut(s)	14, 58, 900
ApeKI	GCWGC	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
AsiGI	ACCGGT	1 cut(s)	537
AspLEI	GCGC	3 cut(s)	275, 950, 1070
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	898
BbsI	GAAGAC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	951
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	6 cut(s)	213, 594, 677, 720, 885, 915
BceAI	ACGGC	2 cut(s)	286, 887
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	732, 981
BfmI	CTRYAG	1 cut(s)	778
BfoI	RGCGCY	1 cut(s)	951
BglII	AGATCT	2 cut(s)	170, 391
BisI	GCNGC	2 cut(s)	31, 192
BlsI	GCNGC	2 cut(s)	32, 193
Bme1390I	CCNGG	2 cut(s)	40, 599
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	40, 599
BmsI	GCATC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	2 cut(s)	146, 552
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	268, 819
BsaWI	WCCGGW	3 cut(s)	288, 537, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	3 cut(s)	151, 314, 564
Bse3DI	GCAATG	1 cut(s)	804
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	268, 819
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	9, 474, 942
BseNI	ACTGG	3 cut(s)	151, 314, 564
BseRI	GAGGAG	5 cut(s)	65, 101, 647, 941, 1040
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	2 cut(s)	275, 1070
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	16, 60, 902
BshTI	ACCGGT	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	5 cut(s)	39, 61, 289, 538, 629
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	16, 60, 902
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp13I	TCCGGA	1 cut(s)	628
BspACI	CCGC	5 cut(s)	124, 192, 506, 879, 1079
BspANI	GGCC	3 cut(s)	16, 60, 902
BspCNI	CTCAG	3 cut(s)	10, 475, 943
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	275, 1070
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	65
BspPI	GGATC	5 cut(s)	58, 71, 620, 976, 1047
BsrDI	GCAATG	1 cut(s)	804
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	151, 314, 564
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	268, 819
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	146, 328, 550, 767
Bst6I	CTCTTC	2 cut(s)	434, 701
BstDEI	CTNAG	3 cut(s)	18, 483, 951
BstDSI	CCRYGG	1 cut(s)	268
BstFNI	CGCG	2 cut(s)	275, 1070
BstH2I	RGCGCY	1 cut(s)	951
BstHHI	GCGC	3 cut(s)	275, 950, 1070
BstMAI	GTCTC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 57, 1076
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	38, 597
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	2 cut(s)	275, 1070
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	5 cut(s)	63, 170, 391, 968, 1039
BstYI	RGATCY	5 cut(s)	63, 170, 391, 968, 1039
BsuRI	GGCC	3 cut(s)	16, 60, 902
BtgI	CCRYGG	1 cut(s)	268
BtsIMutI	CAGTG	4 cut(s)	324, 555, 758, 763
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	3 cut(s)	275, 950, 1070
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	2 cut(s)	31, 264
Csp6I	GTAC	1 cut(s)	509
CspAI	ACCGGT	1 cut(s)	537
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	3 cut(s)	671, 700, 738
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	3 cut(s)	18, 483, 951
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	2 cut(s)	434, 701
EarI	CTCTTC	2 cut(s)	434, 701
Eco130I	CCWWGG	1 cut(s)	819
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	699, 1034
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	819
EcoT38I	GRGCYC	1 cut(s)	898
ErhI	CCWWGG	1 cut(s)	819
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	674, 703, 741
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	670, 699, 737
FauI	CCCGC	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	31, 192
FriOI	GRGCYC	1 cut(s)	898
Fsp4HI	GCNGC	2 cut(s)	31, 192
FspBI	CTAG	2 cut(s)	732, 981
GlaI	GCGC	3 cut(s)	274, 949, 1069
GluI	GCNGC	2 cut(s)	31, 192
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	951
HaeIII	GGCC	3 cut(s)	16, 60, 902
HapII	CCGG	5 cut(s)	39, 61, 289, 538, 629
HgaI	GACGC	2 cut(s)	31, 264
HhaI	GCGC	3 cut(s)	275, 950, 1070
Hin1II	CATG	3 cut(s)	674, 703, 741
Hin6I	GCGC	3 cut(s)	273, 948, 1068
HinP1I	GCGC	3 cut(s)	273, 948, 1068
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	5 cut(s)	280, 406, 434, 837, 1062
HpaII	CCGG	5 cut(s)	39, 61, 289, 538, 629
Hpy166II	GTNNAC	4 cut(s)	232, 261, 297, 546
Hpy188I	TCNGA	7 cut(s)	170, 188, 396, 484, 890, 968, 1024
Hpy188III	TCNNGA	6 cut(s)	467, 629, 671, 794, 834, 1043
Hpy8I	GTNNAC	4 cut(s)	232, 261, 297, 546
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	926, 1058
HpyCH4III	ACNGT	4 cut(s)	146, 328, 550, 767
HpyCH4V	TGCA	4 cut(s)	656, 756, 786, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 57, 1076
HpyF3I	CTNAG	3 cut(s)	18, 483, 951
Hsp92II	CATG	3 cut(s)	674, 703, 741
HspAI	GCGC	3 cut(s)	273, 948, 1068
Kpn2I	TCCGGA	1 cut(s)	628
LmnI	GCTCC	2 cut(s)	291, 469
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	773
MaeI	CTAG	2 cut(s)	732, 981
MaeIII	GTNAC	3 cut(s)	146, 416, 871
MboII	GAAGA	6 cut(s)	240, 353, 356, 451, 692, 718
MfeI	CAATTG	1 cut(s)	301
MflI	RGATCY	5 cut(s)	63, 170, 391, 968, 1039
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	2 cut(s)	301, 789
MlyI	GAGTC	2 cut(s)	443, 1071
MmeI	TCCRAC	1 cut(s)	1002
MroI	TCCGGA	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	5 cut(s)	39, 61, 289, 538, 629
MspR9I	CCNGG	2 cut(s)	40, 599
MunI	CAATTG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	275, 1070
MwoI	GCNNNNNNNGC	3 cut(s)	22, 57, 1076
NciI	CCSGG	1 cut(s)	40
NlaIII	CATG	3 cut(s)	674, 703, 741
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	146, 871
PagI	TCATGA	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	280, 406, 837
PflFI	GACNNNGTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	32, 193
PleI	GAGTC	2 cut(s)	442, 1070
PpsI	GAGTC	2 cut(s)	442, 1070
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	5 cut(s)	63, 170, 391, 968, 1039
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	809
SatI	GCNGC	2 cut(s)	31, 192
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	2 cut(s)	443, 1071
ScrFI	CCNGG	2 cut(s)	40, 599
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	1 cut(s)	773
SfcI	CTRYAG	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	2 cut(s)	161, 567
SmoI	CTYRAG	2 cut(s)	161, 567
Sse9I	AATT	2 cut(s)	301, 789
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	5 cut(s)	124, 192, 506, 879, 1079
SspMI	CTAG	2 cut(s)	732, 981
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	38, 597
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	4 cut(s)	146, 328, 550, 767
TaqI	TCGA	7 cut(s)	120, 251, 278, 413, 437, 835, 1044
TasI	AATT	2 cut(s)	301, 789
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	280, 406, 837
TscAI	CASTG	4 cut(s)	331, 555, 758, 770
TseFI	GTSAC	2 cut(s)	146, 871
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	2 cut(s)	146, 871
TspDTI	ATGAA	2 cut(s)	304, 659
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	4 cut(s)	331, 555, 758, 770
Tth111I	GACNNNGTC	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	732, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.