Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

10027928 .. 10032135

Gene Structure 4208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTCGTCGTCGTCCTTCTCCCCAACTCTCAACCCCACTCACAGACTCACACTCCAAGAAGCCATGCAAAACCCAGACCACCCACCACCGCCGTCGCCATTCCCCTCCAACCCTTCATTCAAAGACCGCTTCTTAGTCTTCCTCCTCATCTTCGCCTCTTCCCTCTTCGCCCTCCTCGTCTTCCTCACCCTCTCTTCCTCCTCCTCCGCCTCCCTCACCTACGCCACTCTCTCCCCACCCTCCTCCTCCTCCTTCTCCCCTCCTTCCTCCCCCCACATCCCACCCGACCCGTTTCTCTTCCCGACCCAGCAGAGCCACCGCGTCGTCTACCACGACAACAACTCCTCCGATCCGACCCCTCCCTCCCTAGCCTACCTCCTCTCCGGGTCTAAAGGCGACTTGGGTCGGATCCTCCGCCTCCTCTACGCCACCTACCACCCCAGAAACCAATACCTCCTCCACCTCGACCGCTTTGCTTCCCAGACTGACCGTGACCAGTTGGCCTTCAAGGTCCAATCCGTCCCCATCTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAAAGCTGACTTTGTCTACCGAAAAGGCTCCTCTTCCATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAGCCAATTGGGACTGGTTCATTAGCCTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATTATGTCGTTTCTGCCCAAAGATCTGAACTTTGTGAACCATTCGAGTTACATTGGCTGGAGAGAGTCGAAGAGGTTGAAACCGGTCATTGTTGATCCGGGGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCAGCACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGGTGCTTCATTTAGTATTCTAAGTCGTAACTTTATGGAGTTTTGTGTTCTTGGTATTGACAACCTCCCACGGACTCTATTGATGTATTTTGCAAACACAGCTTCTTCCCTTTCTGACTACTTTCCTACCGTTATTTGCAACTCCCGGCAGTTCAATAAAACTGTCTTAAACCATAATTTACTATATGCTAATTTTGACACACCCCCAAAAGAGAAGCACCTGCTGCTCAATTCCAGTGATTTTGATGTTATGGTTCGGAATGGAGCTGCCTTTGCCACAGGATTTCGATCAGATGATCCAATACTTGACCGTATAGACAGAGAAATTTTAGAACGCCACTGGGGAAAAGTTGTGCCTGGTGGTTGGTGTTTAGGTGGGTTTGGAAATGACACTTGCTCAGTTTGGGGAGATGCTGATATTTTGAGGCCTAGTCCAAGAGCAAGAGGACTCGAGAAACTTTTAGTTGGTTTGCTCTCGAATGGTACATTTCGTTCTCACCAATGTATATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

469

Amino Acids

52.69

Weight (kDa)

8.83

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	123 - 370	1.7e-55	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1122
Acc36I	ACCTGC	1 cut(s)	1122
AccI	GTMKAC	2 cut(s)	327, 576
AccII	CGCG	2 cut(s)	321, 620
AciI	CCGC	7 cut(s)	89, 127, 207, 319, 415, 469, 537
AclWI	GGATC	5 cut(s)	344, 403, 416, 803, 1184
AcsI	RAATTY	1 cut(s)	1218
AcuI	CTGAAG	1 cut(s)	514
AfaI	GTAC	1 cut(s)	1378
AgeI	ACCGGT	2 cut(s)	796, 882
AgsI	TTSAA	4 cut(s)	121, 508, 793, 1048
AjnI	CCWGG	1 cut(s)	1249
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	3 cut(s)	566, 995, 1160
AluI	AGCT	3 cut(s)	566, 995, 1160
AlwI	GGATC	5 cut(s)	344, 403, 416, 803, 1184
Ama87I	CYCGRG	1 cut(s)	1343
AoxI	GGCC	2 cut(s)	501, 1319
ApeKI	GCWGC	3 cut(s)	851, 1117, 1160
ApoI	RAATTY	1 cut(s)	1218
AsiGI	ACCGGT	2 cut(s)	796, 882
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	3 cut(s)	385, 813, 1039
AsuHPI	GGTGA	3 cut(s)	178, 208, 1382
AvaI	CYCGRG	1 cut(s)	1343
AvaII	GGWCC	1 cut(s)	511
BamHI	GGATCC	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	130, 172
BbvI	GCAGC	3 cut(s)	863, 1104, 1147
BccI	CCATC	3 cut(s)	533, 558, 605
BceAI	ACGGC	2 cut(s)	76, 631
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	1 cut(s)	1251
BcnI	CCSGG	3 cut(s)	385, 813, 1039
BfaI	CTAG	2 cut(s)	368, 1323
BfuAI	ACCTGC	1 cut(s)	1122
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	4 cut(s)	537, 852, 1118, 1161
BlsI	GCNGC	4 cut(s)	538, 853, 1119, 1162
Bme1390I	CCNGG	4 cut(s)	385, 813, 1039, 1251
Bme18I	GGWCC	1 cut(s)	511
BmeT110I	CYCGRG	1 cut(s)	1343
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	410, 589
BmrFI	CCNGG	4 cut(s)	385, 813, 1039, 1251
BmrI	ACTGGG	1 cut(s)	1243
BmsI	GCATC	1 cut(s)	1294
BmuI	ACTGGG	1 cut(s)	1243
BoxI	GACNNNNGTC	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	130, 172
BpmI	CTGGAG	1 cut(s)	793
BpuMI	CCSGG	3 cut(s)	385, 813, 1039
BsaBI	GATNNNNATC	1 cut(s)	1180
BsaJI	CCNNGG	3 cut(s)	613, 812, 962
BsaWI	WCCGGW	3 cut(s)	633, 796, 882
BsaXI	ACNNNNNCTCC	8 cut(s)	36, 66, 326, 329, 356, 359, 365, 395
Bse118I	RCCGGY	2 cut(s)	796, 882
Bse1I	ACTGG	4 cut(s)	496, 659, 1128, 1238
Bse8I	GATNNNNATC	1 cut(s)	1180
BseBI	CCWGG	1 cut(s)	1251
BseDI	CCNNGG	3 cut(s)	613, 812, 962
BseGI	GGATG	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	1180
BseMII	CTCAG	2 cut(s)	819, 1305
BseNI	ACTGG	4 cut(s)	496, 659, 1128, 1238
BseXI	GCAGC	3 cut(s)	863, 1104, 1147
BseYI	CCCAGC	1 cut(s)	306
Bsh1236I	CGCG	2 cut(s)	321, 620
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	503, 1321
BshTI	ACCGGT	2 cut(s)	796, 882
BsiEI	CGRYCG	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	1343
BsiSI	CCGG	6 cut(s)	384, 634, 797, 812, 883, 1039
BslFI	GGGAC	2 cut(s)	506, 665
BsmFI	GGGAC	2 cut(s)	506, 665
BsnI	GGCC	2 cut(s)	503, 1321
BsoBI	CYCGRG	1 cut(s)	1343
Bsp143I	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
BspACI	CCGC	7 cut(s)	89, 127, 207, 319, 415, 469, 537
BspANI	GGCC	2 cut(s)	503, 1321
BspCNI	CTCAG	2 cut(s)	820, 1304
BspFNI	CGCG	2 cut(s)	321, 620
BspLI	GGNNCC	2 cut(s)	410, 589
BspMI	ACCTGC	1 cut(s)	1122
BspPI	GGATC	5 cut(s)	344, 403, 416, 803, 1184
BsrFI	RCCGGY	2 cut(s)	796, 882
BsrI	ACTGG	4 cut(s)	496, 659, 1128, 1238
BssAI	RCCGGY	2 cut(s)	796, 882
BssECI	CCNNGG	3 cut(s)	613, 812, 962
BssMI	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
Bst2UI	CCWGG	1 cut(s)	1251
Bst4CI	ACNGT	5 cut(s)	491, 673, 1024, 1057, 1205
Bst6I	CTCTTC	6 cut(s)	163, 170, 199, 302, 598, 779
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstDEI	CTNAG	4 cut(s)	133, 828, 914, 1291
BstDSI	CCRYGG	2 cut(s)	613, 962
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	321, 620
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	7 cut(s)	352, 411, 706, 739, 811, 1184, 1192
BstMBI	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	3 cut(s)	992, 1117, 1166
BstNI	CCWGG	1 cut(s)	1251
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	4 cut(s)	383, 811, 1037, 1249
BstUI	CGCG	2 cut(s)	321, 620
BstV1I	GCAGC	3 cut(s)	863, 1104, 1147
BstV2I	GAAGAC	2 cut(s)	130, 172
BstX2I	RGATCY	2 cut(s)	408, 736
BstYI	RGATCY	2 cut(s)	408, 736
BsuRI	GGCC	2 cut(s)	503, 1321
BtgI	CCRYGG	2 cut(s)	613, 962
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	669, 1135, 1231
BveI	ACCTGC	1 cut(s)	1122
CfoI	GCGC	1 cut(s)	620
Cfr10I	RCCGGY	2 cut(s)	796, 882
Cfr13I	GGNCC	1 cut(s)	511
CseI	GACGC	2 cut(s)	310, 609
Csp6I	GTAC	1 cut(s)	1377
CspAI	ACCGGT	2 cut(s)	796, 882
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	1377
DdeI	CTNAG	4 cut(s)	133, 828, 914, 1291
DpnI	GATC	7 cut(s)	351, 410, 705, 738, 810, 1183, 1191
DpnII	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
Eam1104I	CTCTTC	6 cut(s)	163, 170, 199, 302, 598, 779
EarI	CTCTTC	6 cut(s)	163, 170, 199, 302, 598, 779
EciI	GGCGGA	2 cut(s)	196, 404
Eco147I	AGGCCT	1 cut(s)	1321
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	514
Eco88I	CYCGRG	1 cut(s)	1343
EcoRII	CCWGG	1 cut(s)	1249
FaeI	CATG	1 cut(s)	67
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	2 cut(s)	506, 665
FatI	CATG	1 cut(s)	63
FblI	GTMKAC	2 cut(s)	327, 576
Fnu4HI	GCNGC	4 cut(s)	537, 852, 1118, 1161
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	537, 852, 1118, 1161
FspBI	CTAG	2 cut(s)	368, 1323
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	4 cut(s)	537, 852, 1118, 1161
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	793
HaeIII	GGCC	2 cut(s)	503, 1321
HapII	CCGG	6 cut(s)	384, 634, 797, 812, 883, 1039
HgaI	GACGC	2 cut(s)	310, 609
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HinfI	GANTC	5 cut(s)	45, 625, 779, 967, 1341
HpaII	CCGG	6 cut(s)	384, 634, 797, 812, 883, 1039
HphI	GGTGA	3 cut(s)	178, 208, 1382
Hpy166II	GTNNAC	5 cut(s)	328, 577, 606, 751, 891
Hpy188I	TCNGA	9 cut(s)	349, 354, 408, 533, 741, 829, 1009, 1152, 1186
Hpy188III	TCNNGA	3 cut(s)	301, 1345, 1369
Hpy8I	GTNNAC	5 cut(s)	328, 577, 606, 751, 891
Hpy99I	CGWCG	5 cut(s)	10, 13, 97, 326, 625
HpyAV	CCTTC	5 cut(s)	25, 123, 262, 273, 514
HpyCH4III	ACNGT	5 cut(s)	491, 673, 1024, 1057, 1205
HpyCH4V	TGCA	4 cut(s)	67, 851, 986, 1032
HpyF10VI	GCNNNNNNNGC	3 cut(s)	992, 1117, 1166
HpyF3I	CTNAG	4 cut(s)	133, 828, 914, 1291
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	618
Kzo9I	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
LmnI	GCTCC	3 cut(s)	593, 636, 1157
Lsp1109I	GCAGC	3 cut(s)	863, 1104, 1147
LweI	GCATC	1 cut(s)	1294
MaeI	CTAG	2 cut(s)	368, 1323
MaeIII	GTNAC	3 cut(s)	491, 761, 920
MalI	GATC	7 cut(s)	351, 410, 705, 738, 810, 1183, 1191
MboI	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
MfeI	CAATTG	1 cut(s)	646
MflI	RGATCY	2 cut(s)	408, 736
MluCI	AATT	5 cut(s)	646, 1069, 1084, 1123, 1218
MlyI	GAGTC	4 cut(s)	39, 788, 961, 1335
MmeI	TCCRAC	3 cut(s)	132, 377, 386
MseI	TTAA	1 cut(s)	1061
MspI	CCGG	6 cut(s)	384, 634, 797, 812, 883, 1039
MspR9I	CCNGG	4 cut(s)	385, 813, 1039, 1251
MunI	CAATTG	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	1251
MvnI	CGCG	2 cut(s)	321, 620
MwoI	GCNNNNNNNGC	3 cut(s)	992, 1117, 1166
NciI	CCSGG	3 cut(s)	385, 813, 1039
NdeII	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	410, 589
NmuCI	GTSAC	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	1343
PaqCI	CACCTGC	1 cut(s)	1122
PceI	AGGCCT	1 cut(s)	1321
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 330
PfeI	GAWTC	1 cut(s)	625
PflFI	GACNNNGTC	1 cut(s)	572
PinAI	ACCGGT	2 cut(s)	796, 882
PkrI	GCNGC	4 cut(s)	538, 853, 1119, 1162
PleI	GAGTC	4 cut(s)	39, 787, 961, 1335
PpsI	GAGTC	4 cut(s)	39, 787, 961, 1335
PshAI	GACNNNNGTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	1249
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	1249
PspN4I	GGNNCC	2 cut(s)	410, 589
PspPI	GGNCC	1 cut(s)	511
PsrI	GAACNNNNNNTAC	2 cut(s)	1369, 1401
PsuI	RGATCY	2 cut(s)	408, 736
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	1 cut(s)	1378
RsaNI	GTAC	1 cut(s)	1377
SaqAI	TTAA	1 cut(s)	1061
SatI	GCNGC	4 cut(s)	537, 852, 1118, 1161
Sau3AI	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	4 cut(s)	39, 788, 961, 1335
ScrFI	CCNGG	4 cut(s)	385, 813, 1039, 1251
SfaNI	GCATC	1 cut(s)	1294
Sfr274I	CTCGAG	1 cut(s)	1343
SinI	GGWCC	1 cut(s)	511
SlaI	CTCGAG	1 cut(s)	1343
SmlI	CTYRAG	1 cut(s)	1343
SmoI	CTYRAG	1 cut(s)	1343
Sse9I	AATT	5 cut(s)	646, 1069, 1084, 1123, 1218
SseBI	AGGCCT	1 cut(s)	1321
SsiI	CCGC	7 cut(s)	89, 127, 207, 319, 415, 469, 537
SspMI	CTAG	2 cut(s)	368, 1323
StuI	AGGCCT	1 cut(s)	1321
StyD4I	CCNGG	4 cut(s)	383, 811, 1037, 1249
TaaI	ACNGT	5 cut(s)	491, 673, 1024, 1057, 1205
TaqI	TCGA	7 cut(s)	465, 623, 758, 782, 1180, 1344, 1370
TasI	AATT	5 cut(s)	646, 1069, 1084, 1123, 1218
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	1 cut(s)	1061
Tru9I	TTAA	1 cut(s)	1061
TscAI	CASTG	3 cut(s)	676, 1135, 1238
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	851, 1117, 1160
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	105, 649, 891
TspGWI	ACGGA	2 cut(s)	508, 979
TspRI	CASTG	3 cut(s)	676, 1135, 1238
Tth111I	GACNNNGTC	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	1218
XhoI	CTCGAG	1 cut(s)	1343
XmiI	GTMKAC	2 cut(s)	327, 576
XspI	CTAG	2 cut(s)	368, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.