Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

34644452 .. 34654484

Gene Structure 10033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAAGACCGGTCTGGTACGAGTCTGACTGACCGTGACCAGTTAGCCCTCAAGGTCCGATCTGTTCCCATTTTCAGAGCCGCCCAAAATGTCCATCTCATCGGTAAAGCTGACTTTGTCTACCGAAAAGGGTCGAAGAGATTGAAACAGGTCATTGTTGATCTGGAGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCGGTACAGAAAAGGGTGTTGCCTAATGCTTATCGGTTGTTTACAGGAGATCGATGGGAAAAAGCCTTGAGATTGGAGTTTCTGAGAGATGGTGACAAATCTGTGGCAGAGTTGATGGATATTGGGAAACAGTTTCTAGGGAGACTGATGGCTCTATTTTTTCTTGCTGAAAATGGTGCTAGCTTAGGTCTCTCATCTGGTGTTGTGGAAGCTGATGCAAAGCAGATTGCAAATATGGCTCGTCAGACATTTGACAAGGAAGAGGCAGATGAGCTATGTCTAACACTAGAGGAGAATGAGGATAAGTCAAGTATTGCCTCAGAGATCGATGGGAGATGTGCTTTATTATTCCATGGTTCTGCTGGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

190

Amino Acids

21.28

Weight (kDa)

5.81

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	81, 203
AfaI	GTAC	2 cut(s)	19, 207
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	5 cut(s)	110, 169, 384, 413, 475
AluI	AGCT	5 cut(s)	110, 169, 384, 413, 475
Alw26I	GTCTC	2 cut(s)	337, 395
AoxI	GGCC	1 cut(s)	565
AsiGI	ACCGGT	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	55, 566
AsuHPI	GGTGA	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	6 cut(s)	102, 249, 284, 310, 343, 524
BcoDI	GTCTC	2 cut(s)	337, 395
BfaI	CTAG	3 cut(s)	338, 381, 488
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 566
BmsI	GCATC	1 cut(s)	406
BmtI	GCTAGC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	35, 289
Bsa29I	ATCGAT	2 cut(s)	253, 528
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	9
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	40
BseCI	ATCGAT	2 cut(s)	253, 528
BseDI	CCNNGG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	171, 275, 534
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	567
BshTI	ACCGGT	1 cut(s)	9
BshVI	ATCGAT	2 cut(s)	253, 528
BsiSI	CCGG	1 cut(s)	10
BsmAI	GTCTC	2 cut(s)	337, 395
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	59, 160, 250, 525
Bsp19I	CCATGG	1 cut(s)	553
BspACI	CCGC	2 cut(s)	81, 203
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	172, 276, 533
BspDI	ATCGAT	2 cut(s)	253, 528
BspOI	GCTAGC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	4 cut(s)	59, 160, 250, 525
BssT1I	CCWWGG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	35, 333
Bst6I	CTCTTC	2 cut(s)	131, 456
BstC8I	GCNNGC	2 cut(s)	382, 565
BstDEI	CTNAG	5 cut(s)	180, 284, 385, 520, 570
BstDSI	CCRYGG	1 cut(s)	553
BstKTI	GATC	4 cut(s)	62, 163, 253, 528
BstMAI	GTCTC	2 cut(s)	337, 395
BstMBI	GATC	4 cut(s)	59, 160, 250, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	12
Bsu15I	ATCGAT	2 cut(s)	253, 528
BsuRI	GGCC	1 cut(s)	567
BsuTUI	ATCGAT	2 cut(s)	253, 528
BtgI	CCRYGG	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	382, 565
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	55, 566
ClaI	ATCGAT	2 cut(s)	253, 528
Csp6I	GTAC	2 cut(s)	18, 206
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	2 cut(s)	18, 206
DdeI	CTNAG	5 cut(s)	180, 284, 385, 520, 570
DpnI	GATC	4 cut(s)	61, 162, 252, 527
DpnII	GATC	4 cut(s)	59, 160, 250, 525
Eam1104I	CTCTTC	2 cut(s)	131, 456
EarI	CTCTTC	2 cut(s)	131, 456
Eco130I	CCWWGG	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	1 cut(s)	557
FaiI	YATR	4 cut(s)	201, 437, 478, 555
FatI	CATG	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	3 cut(s)	338, 381, 488
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	557
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	121, 243
Hpy188I	TCNGA	7 cut(s)	27, 59, 77, 181, 285, 447, 523
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	121, 243
HpyCH4III	ACNGT	2 cut(s)	35, 333
HpyCH4V	TGCA	2 cut(s)	419, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	5 cut(s)	180, 284, 385, 520, 570
Hsp92II	CATG	1 cut(s)	557
Kzo9I	GATC	4 cut(s)	59, 160, 250, 525
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	23, 53, 134, 149, 231, 384, 549
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	3 cut(s)	338, 381, 488
MaeIII	GTNAC	2 cut(s)	35, 293
MalI	GATC	4 cut(s)	61, 162, 252, 527
MboI	GATC	4 cut(s)	59, 160, 250, 525
MboII	GAAGA	3 cut(s)	17, 148, 473
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	59, 457, 484, 493, 529
MspI	CCGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	437
NcoI	CCATGG	1 cut(s)	553
NdeII	GATC	4 cut(s)	59, 160, 250, 525
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	557
NmuCI	GTSAC	2 cut(s)	35, 293
PflFI	GACNNNGTC	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	55, 566
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	2 cut(s)	19, 207
RsaNI	GTAC	2 cut(s)	18, 206
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	4 cut(s)	59, 160, 250, 525
Sau96I	GGNCC	2 cut(s)	55, 566
SchI	GAGTC	1 cut(s)	31
SetI	ASST	8 cut(s)	57, 112, 153, 171, 386, 391, 415, 477
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	50, 268
SmoI	CTYRAG	2 cut(s)	50, 268
SsiI	CCGC	2 cut(s)	81, 203
SspMI	CTAG	3 cut(s)	338, 381, 488
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	2 cut(s)	35, 333
TaqI	TCGA	3 cut(s)	134, 253, 528
TauI	GCSGC	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	35, 293
Tsp45I	GTSAC	2 cut(s)	35, 293
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	3 cut(s)	338, 381, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.