Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

53808643 .. 53812184

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAAAACCCAGACCACCCACCACCACCGTCGCCATTCCCCTCCACCCCTTCATTCAAAGACCGCTTCTTAATCTTCCTCACCATCTTCGCCTCTTCCCCCTTCGCCTTCCTCGTCTTCCTCACCCTCTCCTCCTCCTCCTCCTCCTCCGCCTCCCTCACCTACGCAACTCTCTCCCCACCCTCCTCCTCCTCCTTCTCCCCACCTTCCTCCTCCTCACCCCACATCCCACCCGACCCGTTTCTCTTCCCGACCCAGCAGAGCCACCGCGTCGTCTTCCACGACAACAACTCCTCCGATCCGACCCCTCCTTCCTTAGCCTACCTCCTCTCCGGGTCTAGAGGCGACTTGGGTCGGATCCTCCGCCTCCTCTTCGCCACCTACCACCCCAGAAACCAATACCTCCTCCACCTCGACCGCTTTGCTTCCCAGACTGACCGTGACCAACTGGCCCTCAAGGTCCAATCCGTCCCCATCTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAACGCTGACTTTGTCTACCGAAAAGGCTCCTCTTCCATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAGCCAATTGGGACTGGTTCATTAGCCTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATTATGTCGTTTCTGCCCAAAGATCTGAACTTTGTGAACCATTCGAGTTACATTGGCTGGAGAGAGTCGAAGAGGTTGAAACCGGTCATTGTTGATCCGGGGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCGGCACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGGTGCTTCATTTAATATTCTAAGTCGTAACTTTCTGGAGTTTTGTGTTCTTGGTATTGACAACCTCCCACGGACTCTATTGATGTATTTTGCAAACACAGCTTCTTCCCTTTCTGACTACTTTCCTACCGTTATTTGCAACTCCCGGCAGTTCAATAAAACTGTCTTAAACCATAATTTACTATATGCTAATTTTGACACAACCCCAAAAGAGAAGCACCCACTACTCAATTCCAGTGATTTTGATGTTATGGTTCGGAATGGAGCTGCCTTTGCCACAGGATTTCGATCAGATGATCCAATACTGGACCGGATAGACAGAGAAATTTTAAAACGCCGCCGGGGAAAAGTTGTGCCTGGTGGTTGGTGTTTAGGTGGGTTTGGAAATGACACTTGCTCAGTTTGGGGAGATGCTGATATTTTGAGGCCTAGTCCAAGAGCAAGAGAACTCGAGAAACTTTTAGTTGGTTTGCTCTCGAATGGTACATTTCGTTCTCACCAATGTATATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

453

Amino Acids

50.77

Weight (kDa)

9.1

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	106 - 355	4.9e-54	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	2 cut(s)	270, 569
AciI	CCGC	8 cut(s)	64, 150, 268, 364, 418, 486, 800, 1180
AclWI	GGATC	5 cut(s)	293, 352, 365, 752, 1133
AcsI	RAATTY	1 cut(s)	1167
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	1 cut(s)	1327
AgeI	ACCGGT	2 cut(s)	745, 831
AgsI	TTSAA	3 cut(s)	58, 742, 997
AjnI	CCWGG	1 cut(s)	1198
AluBI	AGCT	2 cut(s)	944, 1109
AluI	AGCT	2 cut(s)	944, 1109
AlwI	GGATC	5 cut(s)	293, 352, 365, 752, 1133
Ama87I	CYCGRG	1 cut(s)	1292
AoxI	GGCC	2 cut(s)	450, 1268
ApeKI	GCWGC	1 cut(s)	1109
ApoI	RAATTY	1 cut(s)	1167
AsiGI	ACCGGT	2 cut(s)	745, 831
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	3 cut(s)	451, 460, 1150
AsuC2I	CCSGG	4 cut(s)	334, 762, 988, 1184
AsuHPI	GGTGA	5 cut(s)	73, 115, 151, 210, 1331
AvaI	CYCGRG	1 cut(s)	1292
AvaII	GGWCC	2 cut(s)	460, 1150
BamHI	GGATCC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	109, 268
BbvI	GCAGC	1 cut(s)	1096
BccI	CCATC	4 cut(s)	92, 482, 507, 554
BceAI	ACGGC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	1200
BcnI	CCSGG	4 cut(s)	334, 762, 988, 1184
BfaI	CTAG	2 cut(s)	339, 1272
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	4 cut(s)	486, 801, 1110, 1180
BlsI	GCNGC	4 cut(s)	487, 802, 1111, 1181
Bme1390I	CCNGG	5 cut(s)	334, 762, 988, 1184, 1200
Bme18I	GGWCC	2 cut(s)	460, 1150
BmeT110I	CYCGRG	1 cut(s)	1292
BmgT120I	GGNCC	3 cut(s)	451, 460, 1150
BmiI	GGNNCC	2 cut(s)	359, 538
BmrFI	CCNGG	5 cut(s)	334, 762, 988, 1184, 1200
BmsI	GCATC	1 cut(s)	1243
BoxI	GACNNNNGTC	1 cut(s)	351
BpiI	GAAGAC	2 cut(s)	109, 268
BpmI	CTGGAG	2 cut(s)	742, 899
Bpu10I	CCTNAGC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	4 cut(s)	334, 762, 988, 1184
BsaBI	GATNNNNATC	1 cut(s)	1129
BsaJI	CCNNGG	4 cut(s)	562, 761, 911, 1183
BsaWI	WCCGGW	4 cut(s)	582, 745, 831, 1152
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 278, 305, 308, 314, 344
Bse118I	RCCGGY	2 cut(s)	745, 831
Bse1I	ACTGG	4 cut(s)	453, 608, 1077, 1152
Bse8I	GATNNNNATC	1 cut(s)	1129
BseBI	CCWGG	1 cut(s)	1200
BseDI	CCNNGG	4 cut(s)	562, 761, 911, 1183
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	1129
BseMII	CTCAG	2 cut(s)	768, 1254
BseNI	ACTGG	4 cut(s)	453, 608, 1077, 1152
BseXI	GCAGC	1 cut(s)	1096
BseYI	CCCAGC	1 cut(s)	255
Bsh1236I	CGCG	2 cut(s)	270, 569
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	452, 1270
BshTI	ACCGGT	2 cut(s)	745, 831
BsiEI	CGRYCG	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	1292
BsiSI	CCGG	8 cut(s)	333, 583, 746, 761, 832, 988, 1153, 1183
BslFI	GGGAC	2 cut(s)	455, 614
BsmFI	GGGAC	2 cut(s)	455, 614
BsnI	GGCC	2 cut(s)	452, 1270
BsoBI	CYCGRG	1 cut(s)	1292
Bsp143I	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
BspACI	CCGC	8 cut(s)	64, 150, 268, 364, 418, 486, 800, 1180
BspANI	GGCC	2 cut(s)	452, 1270
BspCNI	CTCAG	2 cut(s)	769, 1253
BspFNI	CGCG	2 cut(s)	270, 569
BspLI	GGNNCC	2 cut(s)	359, 538
BspPI	GGATC	5 cut(s)	293, 352, 365, 752, 1133
BsrFI	RCCGGY	2 cut(s)	745, 831
BsrI	ACTGG	4 cut(s)	453, 608, 1077, 1152
BssAI	RCCGGY	2 cut(s)	745, 831
BssECI	CCNNGG	4 cut(s)	562, 761, 911, 1183
BssMI	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
Bst2UI	CCWGG	1 cut(s)	1200
Bst4CI	ACNGT	5 cut(s)	30, 440, 622, 973, 1006
Bst6I	CTCTTC	5 cut(s)	100, 251, 377, 547, 728
BstDEI	CTNAG	4 cut(s)	316, 777, 863, 1240
BstDSI	CCRYGG	2 cut(s)	562, 911
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	2 cut(s)	270, 569
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	7 cut(s)	301, 360, 655, 688, 760, 1133, 1141
BstMBI	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	941, 1115
BstNI	CCWGG	1 cut(s)	1200
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	5 cut(s)	332, 760, 986, 1182, 1198
BstUI	CGCG	2 cut(s)	270, 569
BstV1I	GCAGC	1 cut(s)	1096
BstV2I	GAAGAC	2 cut(s)	109, 268
BstX2I	RGATCY	2 cut(s)	357, 685
BstYI	RGATCY	2 cut(s)	357, 685
BsuRI	GGCC	2 cut(s)	452, 1270
BtgI	CCRYGG	2 cut(s)	562, 911
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	618, 1084
CfoI	GCGC	1 cut(s)	569
Cfr10I	RCCGGY	2 cut(s)	745, 831
Cfr13I	GGNCC	3 cut(s)	451, 460, 1150
CseI	GACGC	2 cut(s)	259, 558
Csp6I	GTAC	1 cut(s)	1326
CspAI	ACCGGT	2 cut(s)	745, 831
CviQI	GTAC	1 cut(s)	1326
DdeI	CTNAG	4 cut(s)	316, 777, 863, 1240
DpnI	GATC	7 cut(s)	300, 359, 654, 687, 759, 1132, 1140
DpnII	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
DraI	TTTAAA	1 cut(s)	1173
Eam1104I	CTCTTC	5 cut(s)	100, 251, 377, 547, 728
EarI	CTCTTC	5 cut(s)	100, 251, 377, 547, 728
EciI	GGCGGA	2 cut(s)	139, 353
Eco147I	AGGCCT	1 cut(s)	1270
Eco47I	GGWCC	2 cut(s)	460, 1150
Eco57I	CTGAAG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	1292
EcoRII	CCWGG	1 cut(s)	1198
FaiI	YATR	9 cut(s)	668, 798, 1017, 1027, 1029, 1094, 1349, 1351, 1353
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	2 cut(s)	455, 614
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	486, 801, 1110, 1180
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	486, 801, 1110, 1180
FspBI	CTAG	2 cut(s)	339, 1272
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	4 cut(s)	486, 801, 1110, 1180
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	2 cut(s)	742, 899
HaeIII	GGCC	2 cut(s)	452, 1270
HapII	CCGG	8 cut(s)	333, 583, 746, 761, 832, 988, 1153, 1183
HgaI	GACGC	2 cut(s)	259, 558
HhaI	GCGC	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HinfI	GANTC	3 cut(s)	574, 728, 916
HpaII	CCGG	8 cut(s)	333, 583, 746, 761, 832, 988, 1153, 1183
HphI	GGTGA	5 cut(s)	73, 115, 151, 210, 1331
Hpy166II	GTNNAC	4 cut(s)	526, 555, 700, 840
Hpy188I	TCNGA	9 cut(s)	298, 303, 357, 482, 690, 778, 958, 1101, 1135
Hpy188III	TCNNGA	5 cut(s)	250, 339, 878, 1294, 1318
Hpy8I	GTNNAC	4 cut(s)	526, 555, 700, 840
Hpy99I	CGWCG	3 cut(s)	34, 275, 574
HpyAV	CCTTC	6 cut(s)	60, 112, 118, 205, 216, 321
HpyCH4III	ACNGT	5 cut(s)	30, 440, 622, 973, 1006
HpyCH4V	TGCA	3 cut(s)	4, 935, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	941, 1115
HpyF3I	CTNAG	4 cut(s)	316, 777, 863, 1240
HspAI	GCGC	1 cut(s)	567
Kzo9I	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
LmnI	GCTCC	3 cut(s)	542, 585, 1106
Lsp1109I	GCAGC	1 cut(s)	1096
LweI	GCATC	1 cut(s)	1243
MaeI	CTAG	2 cut(s)	339, 1272
MaeIII	GTNAC	4 cut(s)	440, 509, 710, 869
MalI	GATC	7 cut(s)	300, 359, 654, 687, 759, 1132, 1140
MboI	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
MfeI	CAATTG	1 cut(s)	595
MflI	RGATCY	2 cut(s)	357, 685
MluCI	AATT	5 cut(s)	595, 1018, 1033, 1072, 1167
MlyI	GAGTC	2 cut(s)	737, 910
MmeI	TCCRAC	2 cut(s)	326, 335
MseI	TTAA	4 cut(s)	71, 855, 1010, 1172
MspI	CCGG	8 cut(s)	333, 583, 746, 761, 832, 988, 1153, 1183
MspR9I	CCNGG	5 cut(s)	334, 762, 988, 1184, 1200
MunI	CAATTG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	1200
MvnI	CGCG	2 cut(s)	270, 569
MwoI	GCNNNNNNNGC	2 cut(s)	941, 1115
NciI	CCSGG	4 cut(s)	334, 762, 988, 1184
NdeII	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
NlaIV	GGNNCC	2 cut(s)	359, 538
NmuCI	GTSAC	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	1292
PceI	AGGCCT	1 cut(s)	1270
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 279
PfeI	GAWTC	1 cut(s)	574
PflFI	GACNNNGTC	1 cut(s)	521
PinAI	ACCGGT	2 cut(s)	745, 831
PkrI	GCNGC	4 cut(s)	487, 802, 1111, 1181
PleI	GAGTC	2 cut(s)	736, 910
PpsI	GAGTC	2 cut(s)	736, 910
PshAI	GACNNNNGTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	1198
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	1198
PspN4I	GGNNCC	2 cut(s)	359, 538
PspPI	GGNCC	3 cut(s)	451, 460, 1150
PsrI	GAACNNNNNNTAC	2 cut(s)	1318, 1350
PsuI	RGATCY	2 cut(s)	357, 685
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	1 cut(s)	1327
RsaNI	GTAC	1 cut(s)	1326
SaqAI	TTAA	4 cut(s)	71, 855, 1010, 1172
SatI	GCNGC	4 cut(s)	486, 801, 1110, 1180
Sau3AI	GATC	7 cut(s)	298, 357, 652, 685, 757, 1130, 1138
Sau96I	GGNCC	3 cut(s)	451, 460, 1150
SchI	GAGTC	2 cut(s)	737, 910
ScrFI	CCNGG	5 cut(s)	334, 762, 988, 1184, 1200
SfaNI	GCATC	1 cut(s)	1243
Sfr274I	CTCGAG	1 cut(s)	1292
SinI	GGWCC	2 cut(s)	460, 1150
SlaI	CTCGAG	1 cut(s)	1292
SmlI	CTYRAG	2 cut(s)	455, 1292
SmoI	CTYRAG	2 cut(s)	455, 1292
Sse9I	AATT	5 cut(s)	595, 1018, 1033, 1072, 1167
SseBI	AGGCCT	1 cut(s)	1270
SsiI	CCGC	8 cut(s)	64, 150, 268, 364, 418, 486, 800, 1180
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	2 cut(s)	339, 1272
StuI	AGGCCT	1 cut(s)	1270
StyD4I	CCNGG	5 cut(s)	332, 760, 986, 1182, 1198
TaaI	ACNGT	5 cut(s)	30, 440, 622, 973, 1006
TaqI	TCGA	7 cut(s)	414, 572, 707, 731, 1129, 1293, 1319
TasI	AATT	5 cut(s)	595, 1018, 1033, 1072, 1167
TauI	GCSGC	3 cut(s)	488, 803, 1182
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	4 cut(s)	71, 855, 1010, 1172
Tru9I	TTAA	4 cut(s)	71, 855, 1010, 1172
TscAI	CASTG	2 cut(s)	625, 1084
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	1109
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	42, 598, 840
TspGWI	ACGGA	2 cut(s)	457, 928
TspRI	CASTG	2 cut(s)	625, 1084
Tth111I	GACNNNGTC	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	460, 1150
XapI	RAATTY	1 cut(s)	1167
XbaI	TCTAGA	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	1292
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	2 cut(s)	339, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.