Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

4081134 .. 4084613

Gene Structure 3480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCAAAACTCAAGCCCATCGCCACCGCCATTATCACCACCTTCATTTCTCTCCACACCCACCGCCCTCTCAGTCAAAGACCCCAAAGCTCTCCTCTCAATCATCCTAGTCTCTTCCCTTTTTGCTCTCCTCCTCTTCCTCTCTTCCTCTTCCTCATCCTCATTCTCATCCTCCTCTTCTTCTCCGCATTCTATACCCGACCCGTATCTCTTCCCGACCCGACAAGCCCACCGCATCGTTTACCACGACAACAACTCCTCAGATCCCATCCCTCCCTCCATAGCCTACCTCTTGTCCGGGTCAAAAGGCGACTTGGGTCGGATCCTCAGACTCCTTTACGCCACTTACCACCCCAGAAACCAATATCTTCTCCACCTTGACCGCTCTGCTTCTGATTCTGAGCGTGAAAAGTTGGCTCTCAAAGTCCAGTCACTCCCCATTTTCAGAGCTGCCCAGAATGTCCATGTCATTGGAAAGGCTGATTTTGTGTACCCAACAGGATCTTCTGGTATCTCCTTTACGCTTCATGGCGCGTCGATTCTGCTTCGCTTGTCGCCCATTTGGGATTGGTTTATCAGCCTCAGTGTTAGTGATTATCCACTTGTTACACAAGACGATCTAAACTTTGTGAACCATTCAAGTTATATTGGTTGGAGAGAGTCTAGGAGATTGAAACCGATAATTGTTGATCCGGGGCTTTATCTTTCTCAGAAAACTGAGATGTTCTATGCTGCACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTCACAGGTTCTTCTTTTGCGATTCTAAGTCGTAATTTTATTGAGTTTTGTGTTGTTGGTACTGATAACCTGCCAAGGACTGTATTGATGTATTTTTCTAACACACCTTCAGCCCTTTCCAACTACTTCCCTACCATTCTTTGCAACTCCTATCAGTTCAATAAAACTGTCATAAACCACAACTTGCTATATGCTAATTTCGACACACCCTCCCGAAAGAAGCCCCAGCCAATCAGTTCCGATGATTATGATGTTATGATTCATCATGGGGCTGCCTTTGCCACAGGATTCCGGTTAGATGATCCAATGCTTGACCGTATAGATAGAGATGTATTAAAGCGCGGTCGAGGAAAAGTTGTGCCTGGTGGCTGGTGTTTAGGCGGGTTTGGAAATGACACGTGCTCAGTCTGGGGAGATGCTGATATTTTGCGGCCTGGTCCAGGTGTAAGAGGACTTGAGAAACTTATGGTTGGATTGCTCTCAAATGGCTCATTTCGATCTCATCAATGTATATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

430

Amino Acids

47.62

Weight (kDa)

9.05

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	846
AccBSI	CCGCTC	1 cut(s)	384
AccII	CGCG	2 cut(s)	533, 1110
AciI	CCGC	8 cut(s)	26, 63, 185, 232, 382, 1110, 1149, 1198
AclWI	GGATC	6 cut(s)	257, 316, 329, 508, 683, 1064
AcuI	CTGAAG	1 cut(s)	861
AcvI	CACGTG	1 cut(s)	1167
AfaI	GTAC	2 cut(s)	491, 829
AfiI	CCNNNNNNNGG	1 cut(s)	1208
AflIII	ACRYGT	1 cut(s)	1164
AgeI	ACCGGT	1 cut(s)	762
AgsI	TTSAA	3 cut(s)	639, 673, 928
AjnI	CCWGG	3 cut(s)	1129, 1201, 1207
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	2 cut(s)	89, 449
AluI	AGCT	2 cut(s)	89, 449
Alw21I	GWGCWC	1 cut(s)	1172
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	6 cut(s)	257, 316, 329, 508, 683, 1064
AoxI	GGCC	1 cut(s)	1199
ApeKI	GCWGC	3 cut(s)	449, 731, 1040
AsiGI	ACCGGT	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	533, 1110
AspS9I	GGNCC	1 cut(s)	1205
AsuC2I	CCSGG	2 cut(s)	298, 693
AsuHPI	GGTGA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	1205
BamHI	GGATCC	1 cut(s)	321
BbrPI	CACGTG	1 cut(s)	1167
Bbv12I	GWGCWC	1 cut(s)	1172
BbvI	GCAGC	3 cut(s)	436, 718, 1027
BccI	CCATC	2 cut(s)	25, 275
BciT130I	CCWGG	3 cut(s)	1131, 1203, 1209
BcnI	CCSGG	2 cut(s)	298, 693
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	107, 663
BfuAI	ACCTGC	1 cut(s)	846
BisI	GCNGC	4 cut(s)	450, 732, 1041, 1199
BlsI	GCNGC	4 cut(s)	451, 733, 1042, 1200
Bme1390I	CCNGG	5 cut(s)	298, 693, 1131, 1203, 1209
Bme18I	GGWCC	1 cut(s)	1205
BmgT120I	GGNCC	1 cut(s)	1205
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	5 cut(s)	298, 693, 1131, 1203, 1209
BmsI	GCATC	2 cut(s)	243, 1174
BoxI	GACNNNNGTC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	1244
BpuMI	CCSGG	2 cut(s)	298, 693
BsaAI	YACGTR	1 cut(s)	1167
BsaJI	CCNNGG	2 cut(s)	692, 842
BsaWI	WCCGGW	2 cut(s)	762, 1059
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 962, 992
Bsc4I	CCNNNNNNNGG	1 cut(s)	1208
Bse118I	RCCGGY	1 cut(s)	762
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	3 cut(s)	1131, 1203, 1209
BseDI	CCNNGG	2 cut(s)	692, 842
BseGI	GGATG	4 cut(s)	102, 155, 167, 267
BseLI	CCNNNNNNNGG	1 cut(s)	1208
BseMII	CTCAG	8 cut(s)	84, 273, 340, 390, 595, 708, 722, 1185
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	5 cut(s)	83, 119, 122, 163, 247
BseXI	GCAGC	3 cut(s)	436, 718, 1027
BseYI	CCCAGC	1 cut(s)	993
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	533, 1110
Bsh1285I	CGRYCG	1 cut(s)	1114
BshFI	GGCC	1 cut(s)	1201
BshTI	ACCGGT	1 cut(s)	762
BsiEI	CGRYCG	1 cut(s)	1114
BsiHKAI	GWGCWC	1 cut(s)	1172
BsiSI	CCGG	4 cut(s)	297, 692, 763, 1060
BslI	CCNNNNNNNGG	1 cut(s)	1208
BsmAI	GTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	1201
Bsp1286I	GDGCHC	1 cut(s)	1172
Bsp143I	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
BspACI	CCGC	8 cut(s)	26, 63, 185, 232, 382, 1110, 1149, 1198
BspANI	GGCC	1 cut(s)	1201
BspCNI	CTCAG	8 cut(s)	83, 272, 339, 391, 594, 709, 721, 1184
BspFNI	CGCG	2 cut(s)	533, 1110
BspLI	GGNNCC	1 cut(s)	323
BspMI	ACCTGC	1 cut(s)	846
BspPI	GGATC	6 cut(s)	257, 316, 329, 508, 683, 1064
BsrBI	CCGCTC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	762
BssECI	CCNNGG	2 cut(s)	692, 842
BssMI	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
BssT1I	CCWWGG	1 cut(s)	842
Bst2UI	CCWGG	3 cut(s)	1131, 1203, 1209
Bst4CI	ACNGT	3 cut(s)	850, 937, 1085
Bst6I	CTCTTC	6 cut(s)	118, 140, 148, 154, 181, 215
BstBAI	YACGTR	1 cut(s)	1167
BstDEI	CTNAG	9 cut(s)	70, 259, 326, 399, 581, 708, 717, 794, 1171
BstENI	CCTNNNNNAGG	1 cut(s)	1206
BstF5I	GGATG	4 cut(s)	102, 155, 167, 267
BstFNI	CGCG	2 cut(s)	533, 1110
BstHHI	GCGC	2 cut(s)	533, 1110
BstKTI	GATC	7 cut(s)	265, 324, 503, 619, 691, 1072, 1268
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
BstMCI	CGRYCG	1 cut(s)	1114
BstMWI	GCNNNNNNNGC	1 cut(s)	1046
BstNI	CCWGG	3 cut(s)	1131, 1203, 1209
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	5 cut(s)	296, 691, 1129, 1201, 1207
BstUI	CGCG	2 cut(s)	533, 1110
BstV1I	GCAGC	3 cut(s)	436, 718, 1027
BstX2I	RGATCY	3 cut(s)	262, 321, 500
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	3 cut(s)	262, 321, 500
BsuRI	GGCC	1 cut(s)	1201
BtgZI	GCGATG	1 cut(s)	3
BtsCI	GGATG	4 cut(s)	102, 155, 167, 267
BtsIMutI	CAGTG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	846
CfoI	GCGC	2 cut(s)	533, 1110
Cfr10I	RCCGGY	1 cut(s)	762
Cfr13I	GGNCC	1 cut(s)	1205
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	2 cut(s)	490, 828
CspAI	ACCGGT	1 cut(s)	762
CviAII	CATG	3 cut(s)	464, 527, 1034
CviQI	GTAC	2 cut(s)	490, 828
DdeI	CTNAG	9 cut(s)	70, 259, 326, 399, 581, 708, 717, 794, 1171
DpnI	GATC	7 cut(s)	264, 323, 502, 618, 690, 1071, 1267
DpnII	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
Eam1104I	CTCTTC	6 cut(s)	118, 140, 148, 154, 181, 215
EarI	CTCTTC	6 cut(s)	118, 140, 148, 154, 181, 215
Eco130I	CCWWGG	1 cut(s)	842
Eco47I	GGWCC	1 cut(s)	1205
Eco57I	CTGAAG	1 cut(s)	861
Eco72I	CACGTG	1 cut(s)	1167
EcoNI	CCTNNNNNAGG	1 cut(s)	1206
EcoRII	CCWGG	3 cut(s)	1129, 1201, 1207
EcoT14I	CCWWGG	1 cut(s)	842
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	3 cut(s)	467, 530, 1037
FatI	CATG	3 cut(s)	463, 526, 1033
FauI	CCCGC	1 cut(s)	1142
Fnu4HI	GCNGC	4 cut(s)	450, 732, 1041, 1199
FokI	GGATG	4 cut(s)	89, 142, 154, 254
Fsp4HI	GCNGC	4 cut(s)	450, 732, 1041, 1199
FspBI	CTAG	2 cut(s)	107, 663
GlaI	GCGC	2 cut(s)	532, 1109
GluI	GCNGC	4 cut(s)	450, 732, 1041, 1199
GsaI	CCCAGC	1 cut(s)	997
HaeIII	GGCC	1 cut(s)	1201
HapII	CCGG	4 cut(s)	297, 692, 763, 1060
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	2 cut(s)	533, 1110
Hin1II	CATG	3 cut(s)	467, 530, 1037
Hin6I	GCGC	2 cut(s)	531, 1108
HinP1I	GCGC	2 cut(s)	531, 1108
HinfI	GANTC	7 cut(s)	330, 395, 538, 659, 790, 1027, 1056
HpaII	CCGG	4 cut(s)	297, 692, 763, 1060
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	4 cut(s)	241, 490, 631, 771
Hpy188I	TCNGA	8 cut(s)	262, 321, 329, 394, 400, 446, 711, 1009
Hpy188III	TCNNGA	2 cut(s)	214, 981
Hpy8I	GTNNAC	4 cut(s)	241, 490, 631, 771
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	2 cut(s)	51, 885
HpyCH4III	ACNGT	3 cut(s)	850, 937, 1085
HpyCH4IV	ACGT	1 cut(s)	1166
HpyCH4V	TGCA	3 cut(s)	4, 734, 912
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1046
HpyF3I	CTNAG	9 cut(s)	70, 259, 326, 399, 581, 708, 717, 794, 1171
HpySE526I	ACGT	1 cut(s)	1166
Hsp92II	CATG	3 cut(s)	467, 530, 1037
HspAI	GCGC	2 cut(s)	531, 1108
Kzo9I	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
Lsp1109I	GCAGC	3 cut(s)	436, 718, 1027
LweI	GCATC	2 cut(s)	243, 1174
MaeI	CTAG	2 cut(s)	107, 663
MaeII	ACGT	1 cut(s)	1166
MaeIII	GTNAC	2 cut(s)	429, 604
MalI	GATC	7 cut(s)	264, 323, 502, 618, 690, 1071, 1267
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
MflI	RGATCY	3 cut(s)	262, 321, 500
MhlI	GDGCHC	1 cut(s)	1172
MluCI	AATT	3 cut(s)	681, 802, 964
MlyI	GAGTC	2 cut(s)	324, 668
MmeI	TCCRAC	4 cut(s)	299, 632, 912, 1219
MseI	TTAA	1 cut(s)	1103
MspI	CCGG	4 cut(s)	297, 692, 763, 1060
MspR9I	CCNGG	5 cut(s)	298, 693, 1131, 1203, 1209
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	3 cut(s)	1131, 1203, 1209
MvnI	CGCG	2 cut(s)	533, 1110
MwoI	GCNNNNNNNGC	1 cut(s)	1046
NciI	CCSGG	2 cut(s)	298, 693
NdeII	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
NlaIII	CATG	3 cut(s)	467, 530, 1037
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	5 cut(s)	395, 538, 790, 1027, 1056
PinAI	ACCGGT	1 cut(s)	762
PkrI	GCNGC	4 cut(s)	451, 733, 1042, 1200
PleI	GAGTC	2 cut(s)	324, 667
PmaCI	CACGTG	1 cut(s)	1167
PmlI	CACGTG	1 cut(s)	1167
PpsI	GAGTC	2 cut(s)	324, 667
Ppu21I	YACGTR	1 cut(s)	1167
PshAI	GACNNNNGTC	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	1129, 1201, 1207
PspCI	CACGTG	1 cut(s)	1167
PspFI	CCCAGC	1 cut(s)	993
PspGI	CCWGG	3 cut(s)	1129, 1201, 1207
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	1205
PsuI	RGATCY	3 cut(s)	262, 321, 500
RsaI	GTAC	2 cut(s)	491, 829
RsaNI	GTAC	2 cut(s)	490, 828
SaqAI	TTAA	1 cut(s)	1103
SatI	GCNGC	4 cut(s)	450, 732, 1041, 1199
Sau3AI	GATC	7 cut(s)	262, 321, 500, 616, 688, 1069, 1265
Sau96I	GGNCC	1 cut(s)	1205
SchI	GAGTC	2 cut(s)	324, 668
ScrFI	CCNGG	5 cut(s)	298, 693, 1131, 1203, 1209
SduI	GDGCHC	1 cut(s)	1172
SfaNI	GCATC	2 cut(s)	243, 1174
SinI	GGWCC	1 cut(s)	1205
SmlI	CTYRAG	2 cut(s)	10, 1223
SmoI	CTYRAG	2 cut(s)	10, 1223
Sse9I	AATT	3 cut(s)	681, 802, 964
SsiI	CCGC	8 cut(s)	26, 63, 185, 232, 382, 1110, 1149, 1198
SspMI	CTAG	2 cut(s)	107, 663
StyD4I	CCNGG	5 cut(s)	296, 691, 1129, 1201, 1207
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	3 cut(s)	850, 937, 1085
TaiI	ACGT	1 cut(s)	1169
TaqI	TCGA	4 cut(s)	536, 969, 1114, 1264
TasI	AATT	3 cut(s)	681, 802, 964
TauI	GCSGC	1 cut(s)	1201
TfiI	GAWTC	5 cut(s)	395, 538, 790, 1027, 1056
Tru1I	TTAA	1 cut(s)	1103
Tru9I	TTAA	1 cut(s)	1103
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	3 cut(s)	449, 731, 1040
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	3 cut(s)	33, 515, 1019
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	1205
XagI	CCTNNNNNAGG	1 cut(s)	1206
XspI	CTAG	2 cut(s)	107, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.