Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004742.1

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

57271 .. 59230

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004742.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgctctgcacttcgctcctcgcagctcatcgtgatcaagagtttgtctgtgatggcaaagacgattccagtggtgaggaaaacacagagacccagcaaagcttcgtagagaggaagcatcagtttcctggaatgttgagcgttttcttttctcactctagggaagaagcagatgagctatgtctaacactagaggagaatgaggataagtcatgtactgcctcagagatgggagatgtgctttattattccatggttctgccggcccttagagatggaaaaatggaagatgttctagaaattctacgacgtagattacacaaggctaggcatggactgtattctgtcaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

4.95

Isoelectric Point (pI)

69.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	26, 102, 178
AluI	AGCT	3 cut(s)	26, 102, 178
Alw26I	GTCTC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	3 cut(s)	47, 223, 269
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	4 cut(s)	159, 191, 296, 327
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	8, 209
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	223, 269
BstDSI	CCRYGG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	213, 253, 332
CviJI	RGCY	5 cut(s)	26, 102, 178, 266, 326
CviKI_1	RGCY	5 cut(s)	26, 102, 178, 266, 326
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	223, 269
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	3 cut(s)	216, 256, 335
FaiI	YATR	4 cut(s)	181, 214, 254, 333
FatI	CATG	3 cut(s)	212, 252, 331
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	4 cut(s)	159, 191, 296, 327
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	3 cut(s)	216, 256, 335
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	3 cut(s)	32, 38, 296
Hpy99I	CGWCG	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	9
HpyF3I	CTNAG	2 cut(s)	223, 269
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	216, 256, 335
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	5 cut(s)	82, 107, 114, 141, 276
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	4 cut(s)	159, 191, 296, 327
MaeII	ACGT	1 cut(s)	310
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	176, 299
MluCI	AATT	1 cut(s)	300
MnlI	CCTC	6 cut(s)	29, 70, 105, 187, 196, 232
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	291
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NaeI	GCCGGC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	3 cut(s)	216, 256, 335
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	28, 104, 180, 313
SfaNI	GCATC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	300
SspMI	CTAG	4 cut(s)	159, 191, 296, 327
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	313
TasI	AATT	1 cut(s)	300
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	23
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	300
XbaI	TCTAGA	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	4 cut(s)	159, 191, 296, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.