Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

12263778 .. 12267919

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGTCGTCGTCCTCCCCAACCCTCAACCCCACTCACAGACTCACACTCCAAGAAGCCATGCAAAACCCAGACCACCCACCACCGCCGTCGCCATTCCCCTCCAACCCTTCATTCAAAGACCGCTTCTTAGTCTTCCTCATCATCTTCGCCTCTTCCCTCTTCGCCCTCCTCGTCTTCCTCACCCTCTCCTCCTCCTCCTCCGCCTCCCTCACCTACGCCACTCTCTCCCCACCCTCCTCCTCCTTCTCCTTCTCCCCTCCTTCCTCCCCCCACATCCCACCCGACCCGTTTCTCTTCCCGACCCAGCAGAGCCACCGTGTCATCTACCACGACAACAACTCCTCCGATCCGACCCCTCCCTCCCTGGCCTACCTCCTCTCCGGGTCTAAAGGCGACTTGGGTCGGATCCTCCGCCTCCTCCACGCCACCTACCACCCCAGAAACCAATACCTCCTCCACCTCGACCGCTTTGCTTCCCAGACTGACCGTGACCAGTTGGCCCTCAAGGTCCAATCCGTCCCCATCTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAAAGCTGACTTTGTGTACCGAAAAGGCTCCTCTTCCATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAGCCAATTGGGACTGGTTCATTAGCCTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATCTTGTCGTTTCTGCCCAAAGATCTGAACTTTGTGAACCATTCGAGTTACATTGGCTGGAGAGAGTCGAAGAGATTGAAACCGGTCATTGTTGATCCGGGGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCAGCACAGAAAAGGGTGTTACCTAATGCTTACCGGTTGTTTACAGGTGCTCCATTTAATATTCTAAGTCGTAACTTTATGGAGTTTTGTGTTCTTGGTATTGACAACCTCCCACGTACTCTATTGATGTACTTTGCAAACACAGCTTCTTCCCTTTCTGACTACTTTCCTACTGTTATTTGCAACTCCCGGCAGTTCAATAAAACTGTCTTAAACCATAATTTACTATATGCTAATTTTGACACACCCCCAAAAGAGAAGCACCTGCTGCTCAATTCCAGTGATTTTGATGTTATGGTTCGGAATGGAGCTGCCTTTGCCACAGGATTTCGATCAGATGATCCAATACTTGACCGTATAGACAGAGAAATTTTAGAACGCCGCCGGGGAAAAGTTGTGCCTGGTGGTTGGTGTTTAGGTGGGTTTGGAAATGACACTTGCTCAATTTGGGGAGATGCTGATATTTTGAGGCCTAGTCCAAGAGCAAGAGGACTCGAGAAACTTTTAGTTGGTTTGCTCTCGAATGGTACATTTCGTTCTCACCAATGTATATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

468

Amino Acids

52.58

Weight (kDa)

9.07

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	122 - 369	6.3e-55	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1119
Acc36I	ACCTGC	1 cut(s)	1119
AccII	CGCG	1 cut(s)	617
AciI	CCGC	7 cut(s)	83, 121, 201, 412, 466, 534, 1228
AclWI	GGATC	5 cut(s)	341, 400, 413, 800, 1181
AcsI	RAATTY	1 cut(s)	1215
AcuI	CTGAAG	1 cut(s)	511
AfaI	GTAC	4 cut(s)	575, 964, 977, 1375
AgeI	ACCGGT	2 cut(s)	793, 879
AgsI	TTSAA	3 cut(s)	115, 790, 1045
AjnI	CCWGG	2 cut(s)	363, 1246
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	563, 992, 1157
AluI	AGCT	3 cut(s)	563, 992, 1157
Alw21I	GWGCWC	1 cut(s)	898
AlwI	GGATC	5 cut(s)	341, 400, 413, 800, 1181
Ama87I	CYCGRG	1 cut(s)	1340
AoxI	GGCC	3 cut(s)	366, 498, 1316
ApeKI	GCWGC	3 cut(s)	848, 1114, 1157
ApoI	RAATTY	1 cut(s)	1215
AsiGI	ACCGGT	2 cut(s)	793, 879
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	2 cut(s)	499, 508
AsuC2I	CCSGG	4 cut(s)	382, 810, 1036, 1232
AsuHPI	GGTGA	3 cut(s)	172, 202, 1379
AvaI	CYCGRG	1 cut(s)	1340
AvaII	GGWCC	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	405
BbsI	GAAGAC	2 cut(s)	124, 166
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	3 cut(s)	860, 1101, 1144
BccI	CCATC	3 cut(s)	530, 555, 602
BceAI	ACGGC	2 cut(s)	70, 628
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	2 cut(s)	365, 1248
BcnI	CCSGG	4 cut(s)	382, 810, 1036, 1232
BfaI	CTAG	1 cut(s)	1320
BfuAI	ACCTGC	1 cut(s)	1119
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	5 cut(s)	534, 849, 1115, 1158, 1228
BlsI	GCNGC	5 cut(s)	535, 850, 1116, 1159, 1229
Bme1390I	CCNGG	6 cut(s)	365, 382, 810, 1036, 1232, 1248
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	1340
BmgT120I	GGNCC	2 cut(s)	499, 508
BmiI	GGNNCC	2 cut(s)	407, 586
BmrFI	CCNGG	6 cut(s)	365, 382, 810, 1036, 1232, 1248
BmsI	GCATC	1 cut(s)	1291
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	124, 166
BpmI	CTGGAG	1 cut(s)	790
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	4 cut(s)	382, 810, 1036, 1232
BsaAI	YACGTR	1 cut(s)	962
BsaBI	GATNNNNATC	1 cut(s)	1177
BsaJI	CCNNGG	4 cut(s)	363, 610, 809, 1231
BsaWI	WCCGGW	3 cut(s)	630, 793, 879
Bse118I	RCCGGY	2 cut(s)	793, 879
Bse1I	ACTGG	3 cut(s)	493, 656, 1125
Bse8I	GATNNNNATC	1 cut(s)	1177
BseBI	CCWGG	2 cut(s)	365, 1248
BseDI	CCNNGG	4 cut(s)	363, 610, 809, 1231
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	1177
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	3 cut(s)	493, 656, 1125
BseXI	GCAGC	3 cut(s)	860, 1101, 1144
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	3 cut(s)	368, 500, 1318
BshTI	ACCGGT	2 cut(s)	793, 879
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	898
BsiHKCI	CYCGRG	1 cut(s)	1340
BsiSI	CCGG	7 cut(s)	381, 631, 794, 809, 880, 1036, 1231
BslFI	GGGAC	2 cut(s)	503, 662
BsmFI	GGGAC	2 cut(s)	503, 662
BsnI	GGCC	3 cut(s)	368, 500, 1318
BsoBI	CYCGRG	1 cut(s)	1340
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp143I	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
BspACI	CCGC	7 cut(s)	83, 121, 201, 412, 466, 534, 1228
BspANI	GGCC	3 cut(s)	368, 500, 1318
BspCNI	CTCAG	1 cut(s)	817
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	2 cut(s)	407, 586
BspMI	ACCTGC	1 cut(s)	1119
BspPI	GGATC	5 cut(s)	341, 400, 413, 800, 1181
BsrFI	RCCGGY	2 cut(s)	793, 879
BsrI	ACTGG	3 cut(s)	493, 656, 1125
BssAI	RCCGGY	2 cut(s)	793, 879
BssECI	CCNNGG	4 cut(s)	363, 610, 809, 1231
BssMI	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
Bst2UI	CCWGG	2 cut(s)	365, 1248
Bst4CI	ACNGT	6 cut(s)	317, 488, 670, 1021, 1054, 1202
Bst6I	CTCTTC	5 cut(s)	157, 164, 299, 595, 776
BstAPI	GCANNNNNTGC	1 cut(s)	1114
BstBAI	YACGTR	1 cut(s)	962
BstDEI	CTNAG	3 cut(s)	127, 825, 911
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	7 cut(s)	349, 408, 703, 736, 808, 1181, 1189
BstMBI	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	3 cut(s)	989, 1114, 1163
BstNI	CCWGG	2 cut(s)	365, 1248
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	6 cut(s)	363, 380, 808, 1034, 1230, 1246
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	3 cut(s)	860, 1101, 1144
BstV2I	GAAGAC	2 cut(s)	124, 166
BstX2I	RGATCY	2 cut(s)	405, 733
BstYI	RGATCY	2 cut(s)	405, 733
BsuRI	GGCC	3 cut(s)	368, 500, 1318
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	2 cut(s)	666, 1132
BveI	ACCTGC	1 cut(s)	1119
CfoI	GCGC	1 cut(s)	617
Cfr10I	RCCGGY	2 cut(s)	793, 879
Cfr13I	GGNCC	2 cut(s)	499, 508
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	4 cut(s)	574, 963, 976, 1374
CspAI	ACCGGT	2 cut(s)	793, 879
CviAII	CATG	1 cut(s)	58
CviQI	GTAC	4 cut(s)	574, 963, 976, 1374
DdeI	CTNAG	3 cut(s)	127, 825, 911
DpnI	GATC	7 cut(s)	348, 407, 702, 735, 807, 1180, 1188
DpnII	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
Eam1104I	CTCTTC	5 cut(s)	157, 164, 299, 595, 776
EarI	CTCTTC	5 cut(s)	157, 164, 299, 595, 776
EciI	GGCGGA	2 cut(s)	190, 401
Eco147I	AGGCCT	1 cut(s)	1318
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	1340
EcoRII	CCWGG	2 cut(s)	363, 1246
FaeI	CATG	1 cut(s)	61
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	2 cut(s)	503, 662
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	534, 849, 1115, 1158, 1228
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	5 cut(s)	534, 849, 1115, 1158, 1228
FspBI	CTAG	1 cut(s)	1320
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	5 cut(s)	534, 849, 1115, 1158, 1228
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	790
HaeIII	GGCC	3 cut(s)	368, 500, 1318
HapII	CCGG	7 cut(s)	381, 631, 794, 809, 880, 1036, 1231
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HinfI	GANTC	4 cut(s)	39, 622, 776, 1338
HpaII	CCGG	7 cut(s)	381, 631, 794, 809, 880, 1036, 1231
HphI	GGTGA	3 cut(s)	172, 202, 1379
Hpy166II	GTNNAC	4 cut(s)	574, 603, 748, 888
Hpy188I	TCNGA	9 cut(s)	346, 351, 405, 530, 738, 826, 1006, 1149, 1183
Hpy188III	TCNNGA	3 cut(s)	298, 1342, 1366
Hpy8I	GTNNAC	4 cut(s)	574, 603, 748, 888
Hpy99I	CGWCG	3 cut(s)	10, 91, 622
HpyAV	CCTTC	4 cut(s)	117, 253, 259, 270
HpyCH4III	ACNGT	6 cut(s)	317, 488, 670, 1021, 1054, 1202
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	4 cut(s)	61, 848, 983, 1029
HpyF10VI	GCNNNNNNNGC	3 cut(s)	989, 1114, 1163
HpyF3I	CTNAG	3 cut(s)	127, 825, 911
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	615
Kzo9I	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
LmnI	GCTCC	4 cut(s)	590, 633, 901, 1154
Lsp1109I	GCAGC	3 cut(s)	860, 1101, 1144
LweI	GCATC	1 cut(s)	1291
MaeI	CTAG	1 cut(s)	1320
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	4 cut(s)	488, 758, 864, 917
MalI	GATC	7 cut(s)	348, 407, 702, 735, 807, 1180, 1188
MboI	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
MfeI	CAATTG	1 cut(s)	643
MflI	RGATCY	2 cut(s)	405, 733
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	6 cut(s)	643, 1066, 1081, 1120, 1215, 1290
MlyI	GAGTC	3 cut(s)	33, 785, 1332
MmeI	TCCRAC	3 cut(s)	126, 374, 383
MseI	TTAA	2 cut(s)	903, 1058
MspI	CCGG	7 cut(s)	381, 631, 794, 809, 880, 1036, 1231
MspR9I	CCNGG	6 cut(s)	365, 382, 810, 1036, 1232, 1248
MunI	CAATTG	1 cut(s)	643
MvaI	CCWGG	2 cut(s)	365, 1248
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	3 cut(s)	989, 1114, 1163
NciI	CCSGG	4 cut(s)	382, 810, 1036, 1232
NdeII	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	407, 586
NmuCI	GTSAC	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	1340
PaqCI	CACCTGC	1 cut(s)	1119
PceI	AGGCCT	1 cut(s)	1318
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	622
PinAI	ACCGGT	2 cut(s)	793, 879
PkrI	GCNGC	5 cut(s)	535, 850, 1116, 1159, 1229
PleI	GAGTC	3 cut(s)	33, 784, 1332
PpsI	GAGTC	3 cut(s)	33, 784, 1332
Ppu21I	YACGTR	1 cut(s)	962
PshAI	GACNNNNGTC	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	363, 1246
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	363, 1246
PspN4I	GGNNCC	2 cut(s)	407, 586
PspPI	GGNCC	2 cut(s)	499, 508
PsrI	GAACNNNNNNTAC	2 cut(s)	1366, 1398
PsuI	RGATCY	2 cut(s)	405, 733
RsaI	GTAC	4 cut(s)	575, 964, 977, 1375
RsaNI	GTAC	4 cut(s)	574, 963, 976, 1374
SaqAI	TTAA	2 cut(s)	903, 1058
SatI	GCNGC	5 cut(s)	534, 849, 1115, 1158, 1228
Sau3AI	GATC	7 cut(s)	346, 405, 700, 733, 805, 1178, 1186
Sau96I	GGNCC	2 cut(s)	499, 508
SchI	GAGTC	3 cut(s)	33, 785, 1332
ScrFI	CCNGG	6 cut(s)	365, 382, 810, 1036, 1232, 1248
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	1 cut(s)	1291
Sfr274I	CTCGAG	1 cut(s)	1340
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	1340
SmlI	CTYRAG	2 cut(s)	503, 1340
SmoI	CTYRAG	2 cut(s)	503, 1340
Sse9I	AATT	6 cut(s)	643, 1066, 1081, 1120, 1215, 1290
SseBI	AGGCCT	1 cut(s)	1318
SsiI	CCGC	7 cut(s)	83, 121, 201, 412, 466, 534, 1228
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	1 cut(s)	1320
StuI	AGGCCT	1 cut(s)	1318
StyD4I	CCNGG	6 cut(s)	363, 380, 808, 1034, 1230, 1246
TaaI	ACNGT	6 cut(s)	317, 488, 670, 1021, 1054, 1202
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	7 cut(s)	462, 620, 755, 779, 1177, 1341, 1367
TasI	AATT	6 cut(s)	643, 1066, 1081, 1120, 1215, 1290
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	2 cut(s)	536, 1230
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	2 cut(s)	903, 1058
Tru9I	TTAA	2 cut(s)	903, 1058
TscAI	CASTG	2 cut(s)	673, 1132
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	3 cut(s)	848, 1114, 1157
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	99, 646
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	673, 1132
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	1215
XhoI	CTCGAG	1 cut(s)	1340
XspI	CTAG	1 cut(s)	1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.