Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

35562787 .. 35563835

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG305700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTTCCACCAACAACTTCAACAGGGACCTTTTTCTTCAATCAAAGTGAACGAGGTCTAAAGAGCAATTGTCTTGTTTATGGTAGGGTGTATGCCTTGTTAATTTTTGTCAGATTATATACCTACGGAAGCCTGATGGCCCTAGCTACTTGCCAGTTGCCACACAGGAGCATAGACTCGCTATTACACCTCGGTGATGAATTGATTTGTTACAAGATCAACAGGGAAGAGGCAGATGAGCTATGTCTAACACTAGAGGAGAATGAGGATAAGTCAAGTACTGCCTCAGAGATCGATGGGAGATGTGCTTTATTATTCCATGGTTCTGCTGGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

5.04

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	21, 40
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	146, 241
AluI	AGCT	2 cut(s)	146, 241
AoxI	GGCC	2 cut(s)	138, 331
AspS9I	GGNCC	3 cut(s)	27, 139, 332
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	27
BccI	CCATC	2 cut(s)	130, 290
BfaI	CTAG	2 cut(s)	143, 254
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	27, 139, 332
BmiI	GGNNCC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	190, 319
Bse1I	ACTGG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	190, 319
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	140, 333
BshVI	ATCGAT	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	140, 333
Bsp143I	GATC	2 cut(s)	216, 291
Bsp19I	CCATGG	1 cut(s)	319
BspANI	GGCC	2 cut(s)	140, 333
BspCNI	CTCAG	1 cut(s)	299
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	190, 319
BssMI	GATC	2 cut(s)	216, 291
BssT1I	CCWWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	286, 336
BstDSI	CCRYGG	1 cut(s)	319
BstKTI	GATC	2 cut(s)	219, 294
BstMBI	GATC	2 cut(s)	216, 291
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	140, 333
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	27, 139, 332
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	5 cut(s)	132, 140, 146, 241, 333
CviKI_1	RGCY	5 cut(s)	132, 140, 146, 241, 333
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	286, 336
DpnI	GATC	2 cut(s)	218, 293
DpnII	GATC	2 cut(s)	216, 291
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	323
FaiI	YATR	7 cut(s)	81, 93, 118, 120, 173, 244, 321
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	319
FspBI	CTAG	2 cut(s)	143, 254
HaeIII	GGCC	2 cut(s)	140, 333
Hin1II	CATG	1 cut(s)	323
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	113, 289
Hpy8I	GTNNAC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	286, 336
Hsp92II	CATG	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	216, 291
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	6 cut(s)	9, 146, 151, 167, 208, 315
MaeI	CTAG	2 cut(s)	143, 254
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	218, 293
MboI	GATC	2 cut(s)	216, 291
MboII	GAAGA	2 cut(s)	28, 239
MfeI	CAATTG	1 cut(s)	67
MluCI	AATT	3 cut(s)	67, 102, 200
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	6 cut(s)	47, 200, 223, 250, 259, 295
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	2 cut(s)	216, 291
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	192
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	27, 139, 332
PspPPI	RGGWCCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	216, 291
Sau96I	GGNCC	3 cut(s)	27, 139, 332
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	170
SetI	ASST	6 cut(s)	32, 58, 125, 148, 192, 243
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	67, 102, 200
SspMI	CTAG	2 cut(s)	143, 254
StyI	CCWWGG	1 cut(s)	319
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	67, 102, 200
TatI	WGTACW	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	143, 254
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.