Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

64724628 .. 64729822

Gene Structure 5195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51673

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAAAGCAGCACCACCGGGTCTAAAGGCGAGTTGGGCCGGATCATCTGCCTCCTCTACGCCACCTACCACCCCAGAAATCAATACCTCCTCCACCTCGACCGCTTTGCTTCCCAGACTGACCGTGACCAGTTAGCCCTCAAGGTCCAATTTGTTCCCATTTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAAAGCTGACTTTGTCTACCGAAAAGGGTCGTCTTCGATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAACCAATTGGGACTGGTTCATAAGCTTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTCATGCCCAAAGATCTGAACTTTGTGAATCATTCGAGTTACATTGGCTGGAAAGAGTCGAAGAGATTGAAACAGGTCATTGTTGATCTGGAGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCGGTACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGTTGCCTGCCACAAAGCTGGAATACTGGACTGTTCAAAAGCAAAAGCATGTGAATTTGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

197

Amino Acids

22.66

Weight (kDa)

9.13

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	6 - 172	1.1e-29	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	254
AciI	CCGC	3 cut(s)	103, 171, 485
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	581
AfaI	GTAC	1 cut(s)	489
AgeI	ACCGGT	1 cut(s)	516
AgsI	TTSAA	2 cut(s)	427, 564
AluBI	AGCT	4 cut(s)	200, 300, 451, 545
AluI	AGCT	4 cut(s)	200, 300, 451, 545
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	581
AsiGI	ACCGGT	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	37, 145
AsuC2I	CCSGG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcnI	CCSGG	1 cut(s)	19
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	2 cut(s)	10, 171
BlsI	GCNGC	2 cut(s)	11, 172
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	37, 145
BmrFI	CCNGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	2 cut(s)	267, 516
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	3 cut(s)	130, 293, 558
BseDI	CCNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	130, 293, 558
BseRI	GAGGAG	2 cut(s)	44, 80
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	4 cut(s)	18, 40, 268, 517
BslFI	GGGAC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	5 cut(s)	42, 231, 337, 370, 442
BspACI	CCGC	3 cut(s)	103, 171, 485
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	590
BspPI	GGATC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	130, 293, 558
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	42, 231, 337, 370, 442
Bst4CI	ACNGT	4 cut(s)	125, 307, 529, 560
Bst6I	CTCTTC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	1 cut(s)	462
BstDSI	CCRYGG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	5 cut(s)	45, 234, 340, 373, 445
BstMBI	GATC	5 cut(s)	42, 231, 337, 370, 442
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	590
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	516
Cfr13I	GGNCC	2 cut(s)	37, 145
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	488
CspAI	ACCGGT	1 cut(s)	516
CviAII	CATG	3 cut(s)	361, 576, 591
CviJI	RGCY	8 cut(s)	39, 137, 170, 200, 300, 405, 451, 545
CviKI_1	RGCY	8 cut(s)	39, 137, 170, 200, 300, 405, 451, 545
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	5 cut(s)	44, 233, 339, 372, 444
DpnII	GATC	5 cut(s)	42, 231, 337, 370, 442
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	145
FaeI	CATG	3 cut(s)	364, 579, 594
FaiI	YATR	6 cut(s)	296, 353, 362, 483, 577, 592
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	360, 575, 590
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	10, 171
Fsp4HI	GCNGC	2 cut(s)	10, 171
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	2 cut(s)	10, 171
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	4 cut(s)	18, 40, 268, 517
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	364, 579, 594
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	4 cut(s)	259, 385, 413, 587
HpaII	CCGG	4 cut(s)	18, 40, 268, 517
Hpy166II	GTNNAC	4 cut(s)	211, 240, 276, 525
Hpy188I	TCNGA	3 cut(s)	167, 375, 463
Hpy188III	TCNNGA	2 cut(s)	446, 591
Hpy8I	GTNNAC	4 cut(s)	211, 240, 276, 525
Hpy99I	CGWCG	1 cut(s)	259
HpyCH4III	ACNGT	4 cut(s)	125, 307, 529, 560
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	364, 579, 594
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	42, 231, 337, 370, 442
LmnI	GCTCC	2 cut(s)	270, 448
Lsp1109I	GCAGC	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	125, 395
MalI	GATC	5 cut(s)	44, 233, 339, 372, 444
MboI	GATC	5 cut(s)	42, 231, 337, 370, 442
MboII	GAAGA	4 cut(s)	219, 332, 335, 430
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	3 cut(s)	149, 280, 581
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	6 cut(s)	62, 65, 98, 101, 107, 149
MspI	CCGG	4 cut(s)	18, 40, 268, 517
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	5 cut(s)	42, 231, 337, 370, 442
NlaIII	CATG	3 cut(s)	364, 579, 594
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	579
PagI	TCATGA	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	259, 385, 587
PflFI	GACNNNGTC	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	516
PkrI	GCNGC	2 cut(s)	11, 172
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	37, 145
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SatI	GCNGC	2 cut(s)	10, 171
Sau3AI	GATC	5 cut(s)	42, 231, 337, 370, 442
Sau96I	GGNCC	2 cut(s)	37, 145
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	9 cut(s)	68, 90, 99, 147, 202, 302, 435, 453, 547
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	149, 280, 581
SsiI	CCGC	3 cut(s)	103, 171, 485
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	4 cut(s)	125, 307, 529, 560
TaqI	TCGA	5 cut(s)	99, 230, 257, 392, 416
TasI	AATT	3 cut(s)	149, 280, 581
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	259, 385, 587
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	283, 349, 579
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.