Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

9927040 .. 9927522

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGTTTTGTGTTCTTGGTATTGACAACCTCCCACGGACTCTATTGATGTATTTTGCAAACACAGCTTCTTCCCTTTCTGACTACTTTCCTACCGTTATTTGCAACTCCCGGCAGTTCAATAAAACTGTCTTAAACCATAATTTACTATATGCTAATTTTGACACACCCCCAAAAGAGAAGCACCCGCTGCTCAATTCCAGTGATTTTGATGTTATGGTTCGGAATGGAGCTGCCTTTGCCACAGGATTTCGATCAGATGATCCAATACTTGACCGTATAGACAGAGAAATTTTAAAACGCCGCCGGGGAAAAGTTGTGCCTGGTGGTTGGTGTTTAGGTGGGTTTGGAAATGACACTTGCTCAGTTTGGGGAGATGCTGATATTTTGAGGCCTAGTCCAAGAGCAAGAGGACTCGAGAAACTTTTAGTTGGTTTGCTCTCGAATGGTACATTTCGTTCTCACCAATGTATATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

160

Amino Acids

17.96

Weight (kDa)

8.32

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	2 - 61	1.1e-08	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	188, 304
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	68, 233
AluI	AGCT	2 cut(s)	68, 233
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	190, 233
ApoI	RAATTY	1 cut(s)	291
AsuC2I	CCSGG	2 cut(s)	112, 308
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	177, 220
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	2 cut(s)	112, 308
BfaI	CTAG	1 cut(s)	396
BisI	GCNGC	3 cut(s)	191, 234, 304
BlsI	GCNGC	3 cut(s)	192, 235, 305
Bme1390I	CCNGG	3 cut(s)	112, 308, 324
BmeT110I	CYCGRG	1 cut(s)	416
BmrFI	CCNGG	3 cut(s)	112, 308, 324
BmsI	GCATC	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	112, 308
BsaBI	GATNNNNATC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	35, 307
Bse1I	ACTGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	35, 307
BseJI	GATNNNNATC	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	177, 220
BshFI	GGCC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	112, 307
BsnI	GGCC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	254, 262
BspACI	CCGC	2 cut(s)	188, 304
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	377
BspPI	GGATC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	35, 307
BssMI	GATC	2 cut(s)	254, 262
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	97, 130, 278
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	364
BstDSI	CCRYGG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	257, 265
BstMBI	GATC	2 cut(s)	254, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 190, 239
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	110, 306, 322
BstV1I	GCAGC	2 cut(s)	177, 220
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	450
CviJI	RGCY	3 cut(s)	68, 233, 394
CviKI_1	RGCY	3 cut(s)	68, 233, 394
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	2 cut(s)	256, 264
DpnII	GATC	2 cut(s)	254, 262
DraI	TTTAAA	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	322
FaiI	YATR	8 cut(s)	141, 151, 153, 218, 281, 473, 475, 477
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	191, 234, 304
Fsp4HI	GCNGC	3 cut(s)	191, 234, 304
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	3 cut(s)	191, 234, 304
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	112, 307
HinfI	GANTC	2 cut(s)	40, 414
HpaII	CCGG	2 cut(s)	112, 307
HphI	GGTGA	1 cut(s)	455
Hpy188I	TCNGA	3 cut(s)	82, 225, 259
Hpy188III	TCNNGA	2 cut(s)	418, 442
HpyCH4III	ACNGT	3 cut(s)	97, 130, 278
HpyCH4V	TGCA	2 cut(s)	59, 105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 190, 239
HpyF3I	CTNAG	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	254, 262
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	6 cut(s)	125, 214, 231, 309, 320, 336
Lsp1109I	GCAGC	2 cut(s)	177, 220
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	396
MalI	GATC	2 cut(s)	256, 264
MboI	GATC	2 cut(s)	254, 262
MboII	GAAGA	1 cut(s)	63
MluCI	AATT	4 cut(s)	142, 157, 196, 291
MlyI	GAGTC	2 cut(s)	34, 408
MnlI	CCTC	3 cut(s)	41, 384, 404
MseI	TTAA	2 cut(s)	134, 296
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	2 cut(s)	112, 307
MspR9I	CCNGG	3 cut(s)	112, 308, 324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	65, 190, 239
NciI	CCSGG	2 cut(s)	112, 308
NdeII	GATC	2 cut(s)	254, 262
PaeR7I	CTCGAG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	394
PkrI	GCNGC	3 cut(s)	192, 235, 305
PleI	GAGTC	2 cut(s)	34, 408
PpsI	GAGTC	2 cut(s)	34, 408
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	134, 296
SatI	GCNGC	3 cut(s)	191, 234, 304
Sau3AI	GATC	2 cut(s)	254, 262
SchI	GAGTC	2 cut(s)	34, 408
ScrFI	CCNGG	3 cut(s)	112, 308, 324
SetI	ASST	4 cut(s)	33, 70, 235, 343
SfaNI	GCATC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	4 cut(s)	142, 157, 196, 291
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	2 cut(s)	188, 304
SspMI	CTAG	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	3 cut(s)	110, 306, 322
TaaI	ACNGT	3 cut(s)	97, 130, 278
TaqI	TCGA	3 cut(s)	253, 417, 443
TasI	AATT	4 cut(s)	142, 157, 196, 291
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	134, 296
Tru9I	TTAA	2 cut(s)	134, 296
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	2 cut(s)	190, 233
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.