pycom13g20230

Xylosyltransferase 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
16243863 .. 16247405
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20230.4

Sequence Viewer

Length: 1416 bp
ATGTCATCGGATCCTCCTCCATCCACCACACTCTCACAGTACCTAGCAATGCAAAACTCCACCCCATCGCCACCACCACAAACACCGTCTCCATTTCTCTCCTCCACACCCACCACCGCCTCCTCCGCTGCTATCCCCATCCTCTCAATCAAAGACCCCAAAGCCCTCCTCTCAATCATCATCGTCTTTTCCATTTTCGCCCTCCTCATCCTCCTCCTCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCGTCATTCTCCTCGTCCGCTGCCTCCCGCCATTATCGACCCGACCCATTTCTCTTCCCCAACCAGCAAGCCCACCGCATCATCTACCACGACAACAACTCCTCAGATCCCACGCCTCCCTCCATCGCCTACCTCCTGTCCGGGTCAAAAGGGGACTTGGGTCGGATCCTGAGACTTCTCCACGCCGCCTACCACCCCAGAAACCAGTATCTCCTCCACCTCGACCGCTCTGCCTCCGATTCCGAGAGGGAAAAGTTGGCTCTCAGAGTCCAATCACTGCCCATTTTCAGAGCTGCCCAGAATGTCCATGTCATTGGTAAGGCCGATTTTGTGTACCCAACTGGCTCTTCTGCTATCTCCTTTACGCTCCATGGCGCCTCGATACTGCTGCGTCTGTCGCCCAATTGGGATTGGTTTATCAGCCTCAGTGTTCGTGATTACCCACTAATCACACAAGATGATCTTCTTCACATTATGTCATTCCTACCGAAAGATCTAAACTTTGTGAACCATTCAAGTTATATCGGCTGGAGAGAGTCTAGGAGATTGAGACCGATAATTGTTGACCCGGGGCTTTATCTTTCGGAGAAAACTGACATGTTCTATGCTACACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTCACAGGTTCTTCTTTTACGATTCTAAGTCGTAATTTCATTGAATTTTGTGTTGTTGGTATTGAAAACCTGCCAAGGACTTTGTTGATGTACTTCTCAAACACACCTTCTGCTCTTTCGAATTACTTCCCCACCATTCTTTGCAACTCCCAGCAGTTCAATAAGACTATCATAAACCACAACTTAGTATATGCTAATTCCGACACACCCCCTAGAGAGAAGCCCCAGCCAATCAGTTCCACGGGTTATGATGCTATGATTCAGCATGGAGCGGCCTTTGCCACTGGACTTCAGTTAGACGATCCAATCCTTGACCGAGTGGATAGAGAAATTTTAAAACGCAGACGAGGAAAAATTGTTCCTGGAGGCTGGTGTTTAGGTGGGTTTGCAAATGACACATGTTCAGTGTGGGGGGATGCTGATATTTTGAGGCCTAGTCCACGAGCAAGAATACTTGAGAGACTTTTAGTCAGATTGCTCTCAAATGGCACATTCCGGTCTCATCAATGCATATACGAGTGA

Protein Analysis

472

Amino Acids

52.5

Weight (kDa)

9.28

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 972
AccB1I GGYRCC 1 cut(s) 623
AccBSI CCGCTC 2 cut(s) 477, 1166
AciI CCGC 8 cut(s) 117, 126, 267, 277, 325, 435, 475, 1166
AclWI GGATC 6 cut(s) 5, 18, 350, 409, 422, 1190
AcsI RAATTY 2 cut(s) 938, 1224
AcuI CTGAAG 1 cut(s) 1169
AcyI GRCGYC 1 cut(s) 624
AfaI GTAC 3 cut(s) 41, 584, 986
AflIII ACRYGT 2 cut(s) 846, 1292
AgeI ACCGGT 1 cut(s) 888
AgsI TTSAA 4 cut(s) 765, 938, 959, 1054
AhdI GACNNNNNGTC 1 cut(s) 1361
AjnI CCWGG 1 cut(s) 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AloI GAACNNNNNNTCC 2 cut(s) 1236, 1268
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw26I GTCTC 5 cut(s) 93, 415, 793, 1348, 1398
AlwI GGATC 6 cut(s) 5, 18, 350, 409, 422, 1190
Ama87I CYCGRG 1 cut(s) 817
AoxI GGCC 3 cut(s) 570, 1167, 1325
ApeKI GCWGC 4 cut(s) 128, 269, 542, 637
ApoI RAATTY 2 cut(s) 938, 1224
AsiGI ACCGGT 1 cut(s) 888
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 626
AsuC2I CCSGG 3 cut(s) 391, 818, 819
AsuII TTCGAA 1 cut(s) 1013
AvaI CYCGRG 1 cut(s) 817
BamHI GGATCC 2 cut(s) 10, 414
BanI GGYRCC 1 cut(s) 623
BauI CACGAG 1 cut(s) 1335
BbvI GCAGC 4 cut(s) 115, 256, 529, 624
BccI CCATC 4 cut(s) 28, 73, 146, 380
BcgI CGANNNNNNTGC 4 cut(s) 461, 495, 619, 653
BciT130I CCWGG 1 cut(s) 1257
BcnI CCSGG 3 cut(s) 391, 818, 819
BcoDI GTCTC 5 cut(s) 93, 415, 793, 1348, 1398
BfaI CTAG 4 cut(s) 44, 789, 1107, 1329
BfoI RGCGCY 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 972
BglII AGATCT 1 cut(s) 742
BisI GCNGC 6 cut(s) 129, 270, 435, 543, 638, 1167
BlsI GCNGC 6 cut(s) 130, 271, 436, 544, 639, 1168
Bme1390I CCNGG 4 cut(s) 391, 818, 819, 1257
BmeRI GACNNNNNGTC 1 cut(s) 1361
BmeT110I CYCGRG 1 cut(s) 817
BmiI GGNNCC 3 cut(s) 12, 416, 625
BmrFI CCNGG 4 cut(s) 391, 818, 819, 1257
BmsI GCATC 3 cut(s) 336, 1135, 1300
BoxI GACNNNNGTC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 799, 1278
Bpu14I TTCGAA 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 1370
BpuMI CCSGG 3 cut(s) 391, 818, 819
BsaHI GRCGYC 1 cut(s) 624
BsaI GGTCTC 2 cut(s) 793, 1398
BsaJI CCNNGG 5 cut(s) 619, 817, 818, 968, 1134
BsaWI WCCGGW 2 cut(s) 888, 1389
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 332, 362
Bse118I RCCGGY 1 cut(s) 888
Bse1I ACTGG 3 cut(s) 454, 595, 1183
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 1257
BseDI CCNNGG 5 cut(s) 619, 817, 818, 968, 1134
BseGI GGATG 5 cut(s) 20, 138, 207, 227, 1315
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 4 cut(s) 366, 410, 526, 688
BseNI ACTGG 3 cut(s) 454, 595, 1183
BseXI GCAGC 4 cut(s) 115, 256, 529, 624
BseYI CCCAGC 2 cut(s) 1044, 1119
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 3 cut(s) 572, 1169, 1327
BshNI GGYRCC 1 cut(s) 623
BshTI ACCGGT 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 817
BsiSI CCGG 4 cut(s) 390, 818, 889, 1390
BslFI GGGAC 1 cut(s) 416
BsmAI GTCTC 5 cut(s) 93, 415, 793, 1348, 1398
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 3 cut(s) 572, 1169, 1327
Bso31I GGTCTC 2 cut(s) 793, 1398
BsoBI CYCGRG 1 cut(s) 817
Bsp119I TTCGAA 1 cut(s) 1013
Bsp143I GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 8 cut(s) 117, 126, 267, 277, 325, 435, 475, 1166
BspANI GGCC 3 cut(s) 572, 1169, 1327
BspCNI CTCAG 4 cut(s) 365, 411, 525, 687
BspLI GGNNCC 3 cut(s) 12, 416, 625
BspMI ACCTGC 1 cut(s) 972
BspPI GGATC 6 cut(s) 5, 18, 350, 409, 422, 1190
BspQI GCTCTTC 1 cut(s) 601
BspT104I TTCGAA 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 2 cut(s) 793, 1398
BsrBI CCGCTC 2 cut(s) 477, 1166
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 888
BsrI ACTGG 3 cut(s) 454, 595, 1183
BssAI RCCGGY 1 cut(s) 888
BssECI CCNNGG 5 cut(s) 619, 817, 818, 968, 1134
BssMI GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
BssNI GRCGYC 1 cut(s) 624
BssSI CACGAG 1 cut(s) 1335
BssT1I CCWWGG 2 cut(s) 619, 968
Bst2BI CACGAG 1 cut(s) 1335
Bst2UI CCWGG 1 cut(s) 1257
Bst4CI ACNGT 2 cut(s) 39, 87
Bst6I CTCTTC 2 cut(s) 308, 601
BstACI GRCGYC 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 1013
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 6 cut(s) 352, 419, 512, 674, 920, 1078
BstDSI CCRYGG 2 cut(s) 619, 1134
BstF5I GGATG 5 cut(s) 20, 138, 207, 227, 1315
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 6 cut(s) 13, 358, 417, 712, 745, 1198
BstMAI GTCTC 5 cut(s) 93, 415, 793, 1348, 1398
BstMBI GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 3 cut(s) 125, 646, 1172
BstNI CCWGG 1 cut(s) 1257
BstNSI RCATGY 2 cut(s) 850, 1296
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 4 cut(s) 389, 816, 817, 1255
BstV1I GCAGC 4 cut(s) 115, 256, 529, 624
BstX2I RGATCY 4 cut(s) 10, 355, 414, 742
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 4 cut(s) 10, 355, 414, 742
BsuRI GGCC 3 cut(s) 572, 1169, 1327
BtgI CCRYGG 2 cut(s) 619, 1134
BtgZI GCGATG 2 cut(s) 51, 358
BtsCI GGATG 5 cut(s) 20, 138, 207, 227, 1315
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 4 cut(s) 524, 682, 1176, 1305
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 626
Cfr10I RCCGGY 1 cut(s) 888
Cfr9I CCCGGG 1 cut(s) 817
CseI GACGC 1 cut(s) 629
Csp6I GTAC 3 cut(s) 40, 583, 985
CspAI ACCGGT 1 cut(s) 888
CviAII CATG 5 cut(s) 557, 620, 847, 1160, 1293
CviQI GTAC 3 cut(s) 40, 583, 985
DdeI CTNAG 6 cut(s) 352, 419, 512, 674, 920, 1078
DinI GGCGCC 1 cut(s) 625
DpnI GATC 6 cut(s) 12, 357, 416, 711, 744, 1197
DpnII GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
DraI TTTAAA 1 cut(s) 1230
DriI GACNNNNNGTC 1 cut(s) 1361
Eam1104I CTCTTC 2 cut(s) 308, 601
Eam1105I GACNNNNNGTC 1 cut(s) 1361
EarI CTCTTC 2 cut(s) 308, 601
Eco130I CCWWGG 2 cut(s) 619, 968
Eco147I AGGCCT 1 cut(s) 1327
Eco31I GGTCTC 2 cut(s) 793, 1398
Eco57I CTGAAG 1 cut(s) 1169
Eco88I CYCGRG 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 1255
EcoT14I CCWWGG 2 cut(s) 619, 968
EcoT22I ATGCAT 1 cut(s) 1406
EgeI GGCGCC 1 cut(s) 625
EheI GGCGCC 1 cut(s) 625
ErhI CCWWGG 2 cut(s) 619, 968
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 5 cut(s) 560, 623, 850, 1163, 1296
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 416
FatI CATG 5 cut(s) 556, 619, 846, 1159, 1292
FauI CCCGC 1 cut(s) 284
Fnu4HI GCNGC 6 cut(s) 129, 270, 435, 543, 638, 1167
FokI GGATG 5 cut(s) 7, 125, 194, 214, 1322
Fsp4HI GCNGC 6 cut(s) 129, 270, 435, 543, 638, 1167
FspBI CTAG 4 cut(s) 44, 789, 1107, 1329
GlaI GCGC 1 cut(s) 625
GluI GCNGC 6 cut(s) 129, 270, 435, 543, 638, 1167
GsaI CCCAGC 2 cut(s) 1048, 1123
GsuI CTGGAG 2 cut(s) 799, 1278
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 3 cut(s) 572, 1169, 1327
HapII CCGG 4 cut(s) 390, 818, 889, 1390
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 5 cut(s) 560, 623, 850, 1163, 1296
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 5 cut(s) 488, 516, 785, 916, 1153
HpaII CCGG 4 cut(s) 390, 818, 889, 1390
Hpy166II GTNNAC 5 cut(s) 583, 757, 814, 897, 1334
Hpy188III TCNNGA 2 cut(s) 418, 683
Hpy8I GTNNAC 5 cut(s) 583, 757, 814, 897, 1334
HpyAV CCTTC 1 cut(s) 1011
HpyCH4III ACNGT 2 cut(s) 39, 87
HpyCH4V TGCA 4 cut(s) 52, 1038, 1283, 1404
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 646, 1172
HpyF3I CTNAG 6 cut(s) 352, 419, 512, 674, 920, 1078
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 5 cut(s) 560, 623, 850, 1163, 1296
HspAI GCGC 1 cut(s) 624
KasI GGCGCC 1 cut(s) 623
Kzo9I GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
LguI GCTCTTC 1 cut(s) 601
LmnI GCTCC 2 cut(s) 621, 1163
Lsp1109I GCAGC 4 cut(s) 115, 256, 529, 624
LweI GCATC 3 cut(s) 336, 1135, 1300
MaeI CTAG 4 cut(s) 44, 789, 1107, 1329
MalI GATC 6 cut(s) 12, 357, 416, 711, 744, 1197
MbiI CCGCTC 2 cut(s) 477, 1166
MboI GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
MboII GAAGA 5 cut(s) 295, 588, 704, 707, 897
MfeI CAATTG 1 cut(s) 652
MflI RGATCY 4 cut(s) 10, 355, 414, 742
MluCI AATT 8 cut(s) 652, 807, 928, 938, 1015, 1090, 1224, 1248
Mly113I GGCGCC 1 cut(s) 624
MlyI GAGTC 2 cut(s) 525, 794
MmeI TCCRAC 2 cut(s) 392, 1119
Mph1103I ATGCAT 1 cut(s) 1406
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 1 cut(s) 1229
MspA1I CMGCKG 2 cut(s) 128, 269
MspI CCGG 4 cut(s) 390, 818, 889, 1390
MspR9I CCNGG 4 cut(s) 391, 818, 819, 1257
MunI CAATTG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 1257
MwoI GCNNNNNNNGC 3 cut(s) 125, 646, 1172
NarI GGCGCC 1 cut(s) 624
NciI CCSGG 3 cut(s) 391, 818, 819
NcoI CCATGG 1 cut(s) 619
NdeII GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
NlaIII CATG 5 cut(s) 560, 623, 850, 1163, 1296
NlaIV GGNNCC 3 cut(s) 12, 416, 625
NsiI ATGCAT 1 cut(s) 1406
NspI RCATGY 2 cut(s) 850, 1296
NspV TTCGAA 1 cut(s) 1013
PceI AGGCCT 1 cut(s) 1327
PciI ACATGT 2 cut(s) 846, 1292
PciSI GCTCTTC 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 3 cut(s) 488, 916, 1153
PfoI TCCNGGA 1 cut(s) 1255
PinAI ACCGGT 1 cut(s) 888
PkrI GCNGC 6 cut(s) 130, 271, 436, 544, 639, 1168
PleI GAGTC 2 cut(s) 524, 793
PluTI GGCGCC 1 cut(s) 627
PpsI GAGTC 2 cut(s) 524, 793
PscI ACATGT 2 cut(s) 846, 1292
PshAI GACNNNNGTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 1255
PspFI CCCAGC 2 cut(s) 1044, 1119
PspGI CCWGG 1 cut(s) 1255
PspN4I GGNNCC 3 cut(s) 12, 416, 625
PsuI RGATCY 4 cut(s) 10, 355, 414, 742
RsaI GTAC 3 cut(s) 41, 584, 986
RsaNI GTAC 3 cut(s) 40, 583, 985
SapI GCTCTTC 1 cut(s) 601
SaqAI TTAA 1 cut(s) 1229
SatI GCNGC 6 cut(s) 129, 270, 435, 543, 638, 1167
Sau3AI GATC 6 cut(s) 10, 355, 414, 709, 742, 1195
SchI GAGTC 2 cut(s) 525, 794
ScrFI CCNGG 4 cut(s) 391, 818, 819, 1257
SetI ASST 8 cut(s) 45, 384, 471, 544, 904, 966, 1003, 1276
SfaNI GCATC 3 cut(s) 336, 1135, 1300
SfoI GGCGCC 1 cut(s) 625
SfuI TTCGAA 1 cut(s) 1013
SmaI CCCGGG 1 cut(s) 819
SmlI CTYRAG 1 cut(s) 1349
SmoI CTYRAG 1 cut(s) 1349
Sse9I AATT 8 cut(s) 652, 807, 928, 938, 1015, 1090, 1224, 1248
SseBI AGGCCT 1 cut(s) 1327
SsiI CCGC 8 cut(s) 117, 126, 267, 277, 325, 435, 475, 1166
SspDI GGCGCC 1 cut(s) 623
SspMI CTAG 4 cut(s) 44, 789, 1107, 1329
StuI AGGCCT 1 cut(s) 1327
StyD4I CCNGG 4 cut(s) 389, 816, 817, 1255
StyI CCWWGG 2 cut(s) 619, 968
TaaI ACNGT 2 cut(s) 39, 87
TaqI TCGA 4 cut(s) 286, 471, 629, 1013
TaqII GACCGA 2 cut(s) 817, 1224
TasI AATT 8 cut(s) 652, 807, 928, 938, 1015, 1090, 1224, 1248
TatI WGTACW 1 cut(s) 984
TauI GCSGC 2 cut(s) 437, 1169
TfiI GAWTC 3 cut(s) 488, 916, 1153
Tru1I TTAA 1 cut(s) 1229
Tru9I TTAA 1 cut(s) 1229
TscAI CASTG 4 cut(s) 531, 682, 1183, 1305
TseI GCWGC 4 cut(s) 128, 269, 542, 637
TspDTI ATGAA 1 cut(s) 922
TspMI CCCGGG 1 cut(s) 817
TspRI CASTG 4 cut(s) 531, 682, 1183, 1305
XapI RAATTY 2 cut(s) 938, 1224
XceI RCATGY 2 cut(s) 850, 1296
XmaI CCCGGG 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 4 cut(s) 44, 789, 1107, 1329
Zsp2I ATGCAT 1 cut(s) 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.