Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

36843409 .. 36845472

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG297100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGATTATATACCTAGGGAAGCCTGATGGCCCTAGCTACTTGCCAGTTTCCACACAGGAGCAGAGACTTGCTATTACACCTTGGGAAGAGGCAGATGAGCTATGTCTAACACTAGAGGAGAATGAGGATAAGTCAAGTACTGCCTCCGAGATGGGAGGTGTGCTTTATTATTCCATGGTTCTGCTGGCCCTTAGAGATGGAAAAATGGAAGATGTTCTAGAAATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

76

Amino Acids

8.51

Weight (kDa)

4.05

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	222
AfaI	GTAC	1 cut(s)	139
AluBI	AGCT	2 cut(s)	36, 100
AluI	AGCT	2 cut(s)	36, 100
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	28, 186
ApoI	RAATTY	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	29, 187
AvrII	CCTAGG	1 cut(s)	13
BccI	CCATC	3 cut(s)	20, 145, 191
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	4 cut(s)	14, 33, 113, 218
BlnI	CCTAGG	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	29, 187
BsaJI	CCNNGG	3 cut(s)	13, 80, 174
Bse1I	ACTGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	13, 80, 174
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	30, 188
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	30, 188
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	2 cut(s)	30, 188
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	13, 80, 174
BssT1I	CCWWGG	3 cut(s)	13, 80, 174
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	30, 188
BtgI	CCRYGG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	29, 187
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	22, 30, 36, 100, 188
CviKI_1	RGCY	5 cut(s)	22, 30, 36, 100, 188
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	13, 80, 174
EcoT14I	CCWWGG	3 cut(s)	13, 80, 174
ErhI	CCWWGG	3 cut(s)	13, 80, 174
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	8, 10, 103, 176
FatI	CATG	1 cut(s)	174
FspBI	CTAG	4 cut(s)	14, 33, 113, 218
HaeIII	GGCC	2 cut(s)	30, 188
Hin1II	CATG	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	4 cut(s)	36, 41, 57, 170
MaeI	CTAG	4 cut(s)	14, 33, 113, 218
MboII	GAAGA	2 cut(s)	98, 221
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	5 cut(s)	82, 109, 118, 149, 154
MroXI	GAANNNNTTC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	174
NlaIII	CATG	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	29, 187
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	29, 187
ScaI	AGTACT	1 cut(s)	139
SetI	ASST	5 cut(s)	15, 38, 82, 102, 160
Sse9I	AATT	1 cut(s)	222
SspMI	CTAG	4 cut(s)	14, 33, 113, 218
StyI	CCWWGG	3 cut(s)	13, 80, 174
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	137
XapI	RAATTY	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaJI	CCTAGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	4 cut(s)	14, 33, 113, 218
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.