Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

56462638 .. 56465944

Gene Structure 3307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCCATCTCATCGGTGAAGCTGACTTTGTCTACCGAAAAGGGTCGTCTTCGATCTTGTTCACTCTCCACGGGCGGGTGGATTCTGCTCCGGTTGTCAACCAATTGGGACTGGTTCATTAGCCTCACTGTTAATGACTACTCACTTCTCAAACACGACGATCTTCTTCACATTATGTCATTCCTGCCCAAAGATCTGAACTTTGTGAATCATTCGAGTTACATTGGCTGGAAAGAGTCAAAGAGATTAAAACAGGTCATTGTTGATCCAGAGTTTTATCTTTCTAAGAAAAATGTGATGTTCTATGTAGCACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAAGTGGCAGGAGATCGATGGGAAAAAGCCTTGATATTGGAGTTTTTGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

134

Amino Acids

15.57

Weight (kDa)

9.9

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	28 - 116	2.2e-13	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	339
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
AlwI	GGATC	1 cut(s)	260
AsiGI	ACCGGT	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	2 cut(s)	14, 361
BglII	AGATCT	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	2 cut(s)	90, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	91, 340
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	53, 160, 193, 265, 362
BspACI	CCGC	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	365
BspPI	GGATC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	53, 160, 193, 265, 362
Bst4CI	ACNGT	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	69
BstKTI	GATC	5 cut(s)	56, 163, 196, 268, 365
BstMBI	GATC	5 cut(s)	53, 160, 193, 265, 362
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	365
BsuTUI	ATCGAT	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	365
CspAI	ACCGGT	1 cut(s)	339
CviJI	RGCY	4 cut(s)	22, 123, 228, 378
CviKI_1	RGCY	4 cut(s)	22, 123, 228, 378
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	5 cut(s)	55, 162, 195, 267, 364
DpnII	GATC	5 cut(s)	53, 160, 193, 265, 362
FaiI	YATR	2 cut(s)	176, 306
FaqI	GGGAC	1 cut(s)	122
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	32
HapII	CCGG	2 cut(s)	91, 340
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	3 cut(s)	82, 208, 236
HpaII	CCGG	2 cut(s)	91, 340
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	4 cut(s)	33, 62, 99, 348
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	4 cut(s)	33, 62, 99, 348
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	285
Kzo9I	GATC	5 cut(s)	53, 160, 193, 265, 362
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	8 cut(s)	97, 104, 197, 214, 239, 282, 343, 353
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	5 cut(s)	55, 162, 195, 267, 364
MboI	GATC	5 cut(s)	53, 160, 193, 265, 362
MboII	GAAGA	3 cut(s)	41, 155, 158
MfeI	CAATTG	1 cut(s)	103
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	1 cut(s)	134
MseI	TTAA	2 cut(s)	132, 248
MspI	CCGG	2 cut(s)	91, 340
MunI	CAATTG	1 cut(s)	103
NdeII	GATC	5 cut(s)	53, 160, 193, 265, 362
PfeI	GAWTC	2 cut(s)	82, 208
PflFI	GACNNNGTC	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	339
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	132, 248
Sau3AI	GATC	5 cut(s)	53, 160, 193, 265, 362
SchI	GAGTC	1 cut(s)	245
SetI	ASST	2 cut(s)	24, 258
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	52, 215, 365
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	82, 208
Tru1I	TTAA	2 cut(s)	132, 248
Tru9I	TTAA	2 cut(s)	132, 248
TscAI	CASTG	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.