Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

4823228 .. 4827485

Gene Structure 4258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCGTCGCCGTCGTCCTCCACCATCAACCACCACACTCACAGACCCACCACTCTCCAAGAAGCCATGCAAAACCCAGACCCACCACCACCGCCACCACCTTCTTCTTCTTCTTCCTCTTCCTCCTCTTCCTCCTCATTCAAAGACCACCTCACCATTCTCCTCCTCATCTTCGCCTCTTCCCTCTTGGCCCTCCTCCTCTTCCTCACCCTCTCCTCCTCCCCTTACTCTTCCCCTTCCTCCTCCTCCGCCACCCTCCCACCCGACCCGTTTCTCTTCCCGACCCGAGTCGTCTACCACGACTACAACTCCTCCGATCCCACCCCTCCCTCTTTAGCCTACCTCCTCTCCGGGTCTAAGGGAGACTCGGGTCGGATCCTCCGCCTCCTCTACGCCACTTACCACCCCAGAAACCAGTACCTCCTCCACCTCCACCGCTTCGCTCCCCAGACTGAACGTGACCTTCTGGCCCTCAAGGTCCAATCCGAACCCATTTTCAGAGCTGCCCAGAATGTCCACCTCATCGGTAATGCTGACATTGTCTACCCAAAAGGGTCCTCTTCCATTTCTTTCACTCTCCACGGTGCTTCGATTTTGCTCCGGTTGTCCTCAAACTGGGACTGGTTCATCAGCCTCACTGTTGATGACTACCCACTTGTCAATCAAGACGATCTTCTTCACATTATGTCATTTTTGCCCAAAGAGCTCAACTTTGTCAACCATTCCAGTTACATTGGCTGGAAAGAGGCTAAGAGATTGAAACCGGTCATTGTTGATCCGGGGCTTTATCGGTCTGAGCCAAATGTGATGTTCTATGCGGCACAGAAGAGGGTGTTGCCAAATGCTTACCGGTTGTTTACAGGTGCTTCATTTAATATTCTAAGTCGTAGCTTTATGGAGTTTTGTGTTGTTGGTATTGATAACCTCCCACGGACTCTATTGATAATGGAGCTGCCTTTGCCACAGGATTTCGATCAGATGATCCAATACTTGACCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

334

Amino Acids

37.22

Weight (kDa)

6.86

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	112 - 314	4.7e-42	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	294, 543
AciI	CCGC	5 cut(s)	92, 249, 382, 436, 818
AclWI	GGATC	5 cut(s)	311, 370, 383, 770, 976
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgeI	ACCGGT	2 cut(s)	763, 849
AgsI	TTSAA	2 cut(s)	142, 760
AluBI	AGCT	4 cut(s)	503, 706, 891, 952
AluI	AGCT	4 cut(s)	503, 706, 891, 952
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	5 cut(s)	311, 370, 383, 770, 976
Ama87I	CYCGRG	2 cut(s)	285, 367
AoxI	GGCC	2 cut(s)	189, 468
ApeKI	GCWGC	2 cut(s)	503, 952
AsiGI	ACCGGT	2 cut(s)	763, 849
AspS9I	GGNCC	4 cut(s)	190, 469, 478, 555
AsuC2I	CCSGG	2 cut(s)	352, 780
AsuHPI	GGTGA	2 cut(s)	145, 199
AvaI	CYCGRG	2 cut(s)	285, 367
AvaII	GGWCC	2 cut(s)	478, 555
BamHI	GGATCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	490, 939
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	2 cut(s)	352, 780
BcoDI	GTCTC	1 cut(s)	357
BisI	GCNGC	3 cut(s)	504, 819, 953
BlsI	GCNGC	3 cut(s)	505, 820, 954
Bme1390I	CCNGG	2 cut(s)	352, 780
Bme18I	GGWCC	2 cut(s)	478, 555
BmeT110I	CYCGRG	2 cut(s)	285, 367
BmgT120I	GGNCC	4 cut(s)	190, 469, 478, 555
BmiI	GGNNCC	2 cut(s)	377, 556
BmrFI	CCNGG	2 cut(s)	352, 780
BmrI	ACTGGG	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	625
BoxI	GACNNNNGTC	2 cut(s)	287, 369
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	352, 780
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	3 cut(s)	580, 779, 929
BsaWI	WCCGGW	3 cut(s)	600, 763, 849
BsaXI	ACNNNNNCTCC	6 cut(s)	293, 296, 323, 326, 332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse118I	RCCGGY	2 cut(s)	763, 849
Bse1I	ACTGG	4 cut(s)	415, 620, 626, 726
Bse8I	GATNNNNATC	1 cut(s)	972
BseDI	CCNNGG	3 cut(s)	580, 779, 929
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	4 cut(s)	415, 620, 626, 726
BseXI	GCAGC	2 cut(s)	490, 939
BshFI	GGCC	2 cut(s)	191, 470
BshTI	ACCGGT	2 cut(s)	763, 849
BsiHKAI	GWGCWC	1 cut(s)	708
BsiHKCI	CYCGRG	2 cut(s)	285, 367
BsiSI	CCGG	5 cut(s)	351, 601, 764, 779, 850
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	191, 470
BsoBI	CYCGRG	2 cut(s)	285, 367
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
BspACI	CCGC	5 cut(s)	92, 249, 382, 436, 818
BspANI	GGCC	2 cut(s)	191, 470
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	377, 556
BspPI	GGATC	5 cut(s)	311, 370, 383, 770, 976
BsrFI	RCCGGY	2 cut(s)	763, 849
BsrI	ACTGG	4 cut(s)	415, 620, 626, 726
BssAI	RCCGGY	2 cut(s)	763, 849
BssECI	CCNNGG	3 cut(s)	580, 779, 929
BssMI	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
Bst4CI	ACNGT	3 cut(s)	584, 640, 997
Bst6I	CTCTTC	8 cut(s)	124, 133, 184, 206, 235, 281, 565, 821
BstDEI	CTNAG	4 cut(s)	357, 750, 795, 881
BstDSI	CCRYGG	2 cut(s)	580, 929
BstKTI	GATC	6 cut(s)	319, 378, 673, 778, 976, 984
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	703, 958
BstPAI	GACNNNNGTC	2 cut(s)	287, 369
BstSCI	CCNGG	2 cut(s)	350, 778
BstV1I	GCAGC	2 cut(s)	490, 939
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	191, 470
BtgI	CCRYGG	2 cut(s)	580, 929
BtsIMutI	CAGTG	1 cut(s)	636
Cfr10I	RCCGGY	2 cut(s)	763, 849
Cfr13I	GGNCC	4 cut(s)	190, 469, 478, 555
Csp6I	GTAC	1 cut(s)	418
CspAI	ACCGGT	2 cut(s)	763, 849
CviAII	CATG	1 cut(s)	67
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	357, 750, 795, 881
DpnI	GATC	6 cut(s)	318, 377, 672, 777, 975, 983
DpnII	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
Eam1104I	CTCTTC	8 cut(s)	124, 133, 184, 206, 235, 281, 565, 821
EarI	CTCTTC	8 cut(s)	124, 133, 184, 206, 235, 281, 565, 821
EciI	GGCGGA	2 cut(s)	238, 371
Ecl136II	GAGCTC	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	2 cut(s)	478, 555
Eco53kI	GAGCTC	1 cut(s)	706
Eco88I	CYCGRG	2 cut(s)	285, 367
EcoICRI	GAGCTC	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	708
FaeI	CATG	1 cut(s)	70
FaiI	YATR	5 cut(s)	68, 686, 816, 896, 1000
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	1 cut(s)	66
FblI	GTMKAC	2 cut(s)	294, 543
Fnu4HI	GCNGC	3 cut(s)	504, 819, 953
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	3 cut(s)	504, 819, 953
GluI	GCNGC	3 cut(s)	504, 819, 953
HaeIII	GGCC	2 cut(s)	191, 470
HapII	CCGG	5 cut(s)	351, 601, 764, 779, 850
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	3 cut(s)	288, 365, 934
HpaII	CCGG	5 cut(s)	351, 601, 764, 779, 850
HphI	GGTGA	2 cut(s)	145, 199
Hpy166II	GTNNAC	5 cut(s)	295, 517, 544, 718, 858
Hpy188I	TCNGA	6 cut(s)	316, 375, 487, 500, 796, 978
Hpy188III	TCNNGA	2 cut(s)	280, 665
Hpy8I	GTNNAC	5 cut(s)	295, 517, 544, 718, 858
Hpy99I	CGWCG	2 cut(s)	10, 16
HpyAV	CCTTC	3 cut(s)	111, 246, 473
HpyCH4III	ACNGT	3 cut(s)	584, 640, 997
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	703, 958
HpyF3I	CTNAG	4 cut(s)	357, 750, 795, 881
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
LmnI	GCTCC	3 cut(s)	448, 603, 949
Lsp1109I	GCAGC	2 cut(s)	490, 939
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	458, 728
MalI	GATC	6 cut(s)	318, 377, 672, 777, 975, 983
MboI	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	708
MlyI	GAGTC	3 cut(s)	297, 359, 928
MmeI	TCCRAC	1 cut(s)	353
MseI	TTAA	1 cut(s)	873
MspI	CCGG	5 cut(s)	351, 601, 764, 779, 850
MspR9I	CCNGG	2 cut(s)	352, 780
MwoI	GCNNNNNNNGC	2 cut(s)	703, 958
NciI	CCSGG	2 cut(s)	352, 780
NdeII	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	377, 556
NmuCI	GTSAC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 297
PflFI	GACNNNGTC	1 cut(s)	539
PinAI	ACCGGT	2 cut(s)	763, 849
PkrI	GCNGC	3 cut(s)	505, 820, 954
PleI	GAGTC	3 cut(s)	296, 359, 928
PpsI	GAGTC	3 cut(s)	296, 359, 928
PpuMI	RGGWCCY	1 cut(s)	555
PshAI	GACNNNNGTC	2 cut(s)	287, 369
Psp124BI	GAGCTC	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	377, 556
PspPI	GGNCC	4 cut(s)	190, 469, 478, 555
PspPPI	RGGWCCY	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	539
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	3 cut(s)	504, 819, 953
Sau3AI	GATC	6 cut(s)	316, 375, 670, 775, 973, 981
Sau96I	GGNCC	4 cut(s)	190, 469, 478, 555
SchI	GAGTC	3 cut(s)	297, 359, 928
ScrFI	CCNGG	2 cut(s)	352, 780
SduI	GDGCHC	1 cut(s)	708
SinI	GGWCC	2 cut(s)	478, 555
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SsiI	CCGC	5 cut(s)	92, 249, 382, 436, 818
SspI	AATATT	1 cut(s)	877
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	2 cut(s)	350, 778
TaaI	ACNGT	3 cut(s)	584, 640, 997
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	590, 972
TaqII	GACCGA	1 cut(s)	780
TauI	GCSGC	1 cut(s)	821
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	503, 952
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	616, 858
TspGWI	ACGGA	1 cut(s)	946
TspRI	CASTG	1 cut(s)	643
Tth111I	GACNNNGTC	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	478, 555
XmiI	GTMKAC	2 cut(s)	294, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.